Search results for "Monte carlo method"

showing 10 items of 1234 documents

Stretching of Free Chains Confined in Concave Brush-Coated Nanocylinders

2012

The structure of a free flexible macromolecule confined in a cylindrical nanopore whose wall is coated by a polymer brush is studied by Monte Carlo simulation, varying the grafting density as well as the radius of the cylindrical pore. Because of this confinement, the free chain is stretched in axial direction; while for small grafting densities of the brush the end-to-end distance increases monotonously with decreasing pore radius, a nonmonotonic variation occurs for larger grafting densities. We show that this effect is due to strong interpenetration of the free chain and the brush chains; for very narrow pores a strong layering of cylindrical shells is found, and comparison with self-con…

Quantitative Biology::BiomoleculesMaterials sciencePolymers and PlasticsOrganic ChemistryMonte Carlo methodBrushPenetration (firestop)Polymer brushMolecular physicslaw.inventionCondensed Matter::Soft Condensed MatterInorganic ChemistryNanoporelawPolymer chemistryMaterials ChemistryLayeringMacromoleculeMacromolecules
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Phase Diagram of Random Copolymer Melts:  A Computer Simulation Study

2004

We investigate the phase behavior of random copolymer melts via large-scale Monte Carlo simulations. The AB multiblock copolymers have, on average, symmetric composition and are characterized by a ...

Quantitative Biology::BiomoleculesMaterials sciencePolymers and PlasticsOrganic ChemistryMonte Carlo methodMultiblock copolymerThermodynamicsCondensed Matter::Soft Condensed MatterInorganic ChemistryPhase (matter)Materials ChemistryCopolymerStatistical physicsPhase diagramMacromolecules
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Interface and Surface Properties of Short Polymers in Solution:  Monte Carlo Simulations and Self-Consistent Field Theory

2000

We investigate the structure and thermodynamics of inhomogeneous polymer solutions in the framework of a coarse-grained off-lattice model. Properties of the liquidvapor interface and the packing of...

Quantitative Biology::BiomoleculesMaterials sciencePolymers and PlasticsQuantum Monte CarloOrganic ChemistryMonte Carlo methodMonte Carlo method for photon transportCondensed Matter::Soft Condensed MatterInorganic ChemistryMaterials ChemistryDynamic Monte Carlo methodMonte Carlo method in statistical physicsKinetic Monte CarloDirect simulation Monte CarloStatistical physicsMonte Carlo molecular modelingMacromolecules
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Iterative integral equation methods for structural coarse-graining

2021

In this paper, new Newton and Gauss-Newton methods for iterative coarse-graining based on integral equation theory are evaluated and extended. In these methods, the potential update is calculated from the current and target radial distribution function, similar to iterative Boltzmann inversion, but gives a potential update of quality comparable with inverse Monte Carlo. This works well for the coarse-graining of molecules to single beads, which we demonstrate for water. We also extend the methods to systems that include coarse-grained bonded interactions and examine their convergence behavior. Finally, using the Gauss-Newton method with constraints, we derive a model for single bead methano…

Quantitative Biology::BiomoleculesMonte Carlo methodGeneral Physics and AstronomyInverseRadial distribution functionIntegral equationInversion (discrete mathematics)symbols.namesakeBoltzmann constantConvergence (routing)symbolsApplied mathematicsGranularityPhysical and Theoretical ChemistryMathematicsThe Journal of Chemical Physics
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Intermolecular structure factors of macromolecules in solution: Integral equation results

1999

The inter-molecular structure of semidilute polymer solutions is studied theoretically. The low density limit of a generalized Ornstein-Zernicke integral equation approach to polymeric liquids is considered. Scaling laws for the dilute-to-semidilute crossover of random phase (RPA) like structure are derived for the inter-molecular structure factor on large distances when inter-molecular excluded volume is incorporated at the microscopic level. This leads to a non-linear equation for the excluded volume interaction parameter. For macromolecular size-mass scaling exponents, $\nu$, above a spatial-dimension dependent value, $\nu_c=2/d$, mean field like density scaling is recovered, but for $\n…

Quantitative Biology::BiomoleculesMonte Carlo methodIntermolecular forcepacs:61.20.JaFOS: Physical sciencesCondensed Matter - Soft Condensed MatterFlory–Huggins solution theoryIntegral equationCondensed Matter::Soft Condensed Matterpacs:61.25.HqExcluded volumeExponentSoft Condensed Matter (cond-mat.soft)ddc:530Statistical physicspacs:61.12.ExStructure factorScalingMathematics
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Statics and dynamics of dense polymer systems studied by monte carlo simulation

1995

Monte Carlo simulations of coarse–grained models of macromolecules offer a unique tool to study the interplay between coil conformations, thermodynamic properties, and chain configurational relaxation and diffusion. Two examples are discussed where the chain conformation strongly differs from a gaussian coil: (i) collapsed chains in a bad solvent, where anomalous diffusion occurs in the Rouse limit and the relaxation time increases at least with the third power of chain length. (ii) Expulsion of a chain from a semidilute polymer brush. The initially stretched chain contracts to a gaussian coil and the center of mass moves outward with constant velocity until it reaches the region of the “la…

Quantitative Biology::BiomoleculesPolymers and PlasticsAnomalous diffusionChemistryGaussianOrganic ChemistryMonte Carlo methodRelaxation (NMR)Condensed Matter PhysicsPolymer brushMolecular physicsCondensed Matter::Soft Condensed Mattersymbols.namesakeChain (algebraic topology)Materials ChemistrysymbolsCenter of massStatistical physicsDiffusion (business)Macromolecular Symposia
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Monte Carlo simulation of block copolymers

2000

Monte Carlo simulations deal with crudely simplified but well-defined models and have the advantage that they treat the statistical thermodynamics of the considered model exactly (apart from statistical errors and problems due to finite size effects). Therefore, these simulations are well suited to test various approximate theories of block copolymer ordering, e.g. the self-consistent field theory. Recent examples of this approach include the study of block copolymer ordering at melt surfaces and confinement effects in thin films, adsorption of block copolymers at interfaces of unmixed homopolymer blends, the phase behavior of ternary mixtures of two homopolymers and their block copolymer, …

Quantitative Biology::BiomoleculesPolymers and PlasticsChemistryMonte Carlo methodSurfaces and InterfacesMicelleCondensed Matter::Soft Condensed MatterColloid and Surface ChemistryPhase (matter)CopolymerField theory (psychology)Self-assemblyStatistical physicsPhysical and Theoretical ChemistryTernary operationConfined space
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The phase diagram of a single polymer chain: New insights from a new simulation method

2006

We present simulation results for the phase behavior of a single chain for a flexible lattice polymer model using the Wang-Landau sampling idea. Applying this new algorithm to the problem of the homopolymer collapse allows us to investigate not only the high temperature coil–globule transition but also an ensuing crystallization at lower temperature. Performing a finite size scaling analysis on the two transitions, we show that they coincide for our model in the thermodynamic limit corresponding to a direct collapse of the random coil into the crystal without intermediate coil–globule transition. As a consequence, also the many chain phase diagram of this model can be predicted to consist o…

Quantitative Biology::BiomoleculesPolymers and PlasticsChemistryMonte Carlo methodThermodynamicsCondensed Matter PhysicsRandom coillaw.inventionlawLattice (order)Thermodynamic limitMaterials ChemistryDensity of statesStatistical physicsPhysical and Theoretical ChemistryCrystallizationScalingPhase diagramJournal of Polymer Science Part B: Polymer Physics
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New Results on the Collapse Transition(s) of Flexible Homopolymers

2007

We analyze the collapse transition of flexible homopolymer chains in the bond-fluctuation model employing the Wang-Landau Monte Carlo algorithm. The coil-globule transition is followed by a first order transition into a solid state occurring in the collapsed globule. In the thermodynamic limit (chain length to infinity) the topology of the phase diagram depends on the range of the attractive interaction between the monomers. For sufficiently large interaction range a normal behaviour of a continuous coil-globule transition at the Θ-temperature followed by a crystallization transition at lower temperature is observed. For short interaction range the first-order transition asymptotically can …

Quantitative Biology::BiomoleculesRange (particle radiation)Polymers and PlasticsChemistryOrganic ChemistryMonte Carlo methodCollapse (topology)Coil-globule transitionThermodynamicsCondensed Matter Physicslaw.inventionCondensed Matter::Soft Condensed MatterlawThermodynamic limitMaterials ChemistryCrystallizationMonte Carlo algorithmPhase diagramMacromolecular Symposia
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Monte Carlo simulations of polymer dynamics: Recent advances

1997

A brief review is given of applications of Monte Carlo simulations to study the dynamical properties of coarse-grained models of polymer melts, emphasizing the crossover from the Rouse model toward reptation, and the glass transition. The extent to which Monte Carlo algorithms can mimic the actual chain dynamics is critically examined, and the need for the use of coarse-grained rather than fully atomistic models for such simulations is explained. It is shown that various lattice and continuum models yield qualitatively similar results, and the behavior agrees with the findings of corresponding molecular dynamics simulations and experiments, where available. It is argued that these simulatio…

Quantitative Biology::BiomoleculesSelf-diffusionPolymers and PlasticsContinuum (measurement)ChemistryMonte Carlo methodCrossoverCondensed Matter PhysicsMolecular dynamicsReptationMaterials ChemistryDynamic Monte Carlo methodStatistical physicsPhysical and Theoretical ChemistryMonte Carlo molecular modelingJournal of Polymer Science Part B: Polymer Physics
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