Search results for "NEA"

showing 10 items of 16082 documents

A Clonal Lineage of Fusarium oxysporum Circulates in the Tap Water of Different French Hospitals.

2016

ABSTRACT Fusarium oxysporum is typically a soilborne fungus but can also be found in aquatic environments. In hospitals, water distribution systems may be reservoirs for the fungi responsible for nosocomial infections. F. oxysporum was previously detected in the water distribution systems of five French hospitals. Sixty-eight isolates from water representative of all hospital units that were previously sampled and characterized by translation elongation factor 1α sequence typing were subjected to microsatellite analysis and full-length ribosomal intergenic spacer (IGS) sequence typing. All but three isolates shared common microsatellite loci and a common two-locus sequence type (ST). This S…

0301 basic medicineSystemVeterinary medicineLineage (genetic)Sequence analysis030106 microbiologyBiologyInfectionsApplied Microbiology and BiotechnologyMicrobiology03 medical and health sciencesIntergenic regionOriginPeptide Elongation Factor 1FusariumPhylogeneticsFusarium oxysporum[SDV.IDA]Life Sciences [q-bio]/Food engineeringHumansTypingDrinking-waterDNA FungalPhylogenyVegetative compatibility groupsDiversityEcologyPublic and Environmental Health MicrobiologyDrinking Water[ SDV.IDA ] Life Sciences [q-bio]/Food engineeringFungiAustraliafood and beveragesSequence Analysis DNARibosomal RNAbiology.organism_classificationHospitals030104 developmental biologyFusariosisMicrosatelliteDNA IntergenicFranceFood ScienceBiotechnologyMicrosatellite RepeatsApplied and environmental microbiology
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Evolutionary History of the Nesophontidae, the Last Unplaced Recent Mammal Family

2016

The mammalian evolutionary tree has lost several major clades through recent human-caused extinctions. This process of historical biodiversity loss has particularly affected tropical island regions such as the Caribbean, an area of great evolutionary diversification but poor molecular preservation. The most enigmatic of the recently extinct endemic Caribbean mammals are the Nesophontidae, a family of morphologically plesiomorphic lipotyphlan insectivores with no consensus on their evolutionary affinities, and which constitute the only major recent mammal clade to lack any molecular information on their phylogenetic placement. Here, we use a palaeogenomic approach to place Nesophontidae with…

0301 basic medicineSystematicsWest IndiesLineage (evolution)ZoologyBiologyNesophontesDNA Mitochondrial03 medical and health sciencesPhylogeneticsGeneticsAnimalsDNA AncientCladeMolecular BiologyPhylogenyEcology Evolution Behavior and SystematicsPhylogenetic treeEulipotyphlaBiodiversitySequence Analysis DNAbiology.organism_classificationBiological Evolution030104 developmental biologyAncient DNAGenome MitochondrialMammalMolecular Biology and Evolution
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Telencephalic-olfactory bulb ventricle wall organization in Austrolebias charrua: Cytoarchitecture, proliferation dynamics, neurogenesis and migratio…

2016

Adult neurogenesis participates in fish olfaction sensitivity in response to environmental challenges. Therefore, we investigated if several populations of stem/progenitor cells that are retained in the olfactory bulbs (OB) may constitute different neurogenic niches that support growth and functional demands. By electron microscopy and combination cell proliferation and lineage markers, we found that the telencephalic ventricle wall (VW) at OB level of Austrolebias charrua fish presents three neurogenic niches (transitional 1, medial 2 and ventral 3). The main cellular types described in other vertebrate neurogenic niches were identified (transient amplifying cells, stem cells and migrating…

0301 basic medicineTelencephalonNeurogenesisBiology03 medical and health sciencesCyprinodontiformesNeuroblastCell MovementmedicineAnimalsCell LineageProgenitor cellCell ProliferationNeuronsCerebrumGeneral NeuroscienceCiliumLineage markersStem CellsNeurogenesisOlfactory BulbOlfactory bulbCell biology030104 developmental biologymedicine.anatomical_structureStem cellNeuroscienceNeuroscience
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Parallel and Space-Efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome Data

2016

Next-generation sequencing technologies have led to the sequencing of more and more genomes, propelling related research into the era of big data. In this paper, we present ParaBWT, a parallelized Burrows-Wheeler transform (BWT) and suffix array construction algorithm for big genome data. In ParaBWT, we have investigated a progressive construction approach to constructing the BWT of single genome sequences in linear space complexity, but with a small constant factor. This approach has been further parallelized using multi-threading based on a master-slave coprocessing model. After gaining the BWT, the suffix array is constructed in a memory-efficient manner. The performance of ParaBWT has b…

0301 basic medicineTheoretical computer scienceBurrows–Wheeler transformComputer scienceGenomicsData_CODINGANDINFORMATIONTHEORYParallel computingGenomelaw.invention03 medical and health scienceslawGeneticsHumansEnsemblMulti-core processorApplied MathematicsLinear spaceSuffix arrayChromosome MappingHigh-Throughput Nucleotide SequencingGenomicsSequence Analysis DNA030104 developmental biologyAlgorithmsBiotechnologyReference genomeIEEE/ACM Transactions on Computational Biology and Bioinformatics
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QuBiLS-MAS, open source multi-platform software for atom- and bond-based topological (2D) and chiral (2.5D) algebraic molecular descriptors computati…

2017

Background In previous reports, Marrero-Ponce et al. proposed algebraic formalisms for characterizing topological (2D) and chiral (2.5D) molecular features through atom- and bond-based ToMoCoMD-CARDD (acronym for Topological Molecular Computational Design-Computer Aided Rational Drug Design) molecular descriptors. These MDs codify molecular information based on the bilinear, quadratic and linear algebraic forms and the graph-theoretical electronic-density and edge-adjacency matrices in order to consider atom- and bond-based relations, respectively. These MDs have been successfully applied in the screening of chemical compounds of different therapeutic applications ranging from antimalarials…

0301 basic medicineTheoretical computer scienceComputer scienceBilinear interpolationLibrary and Information SciencesTopologyLinear01 natural scienceslcsh:ChemistryToMoCoMD-CARDDDouble stochastic03 medical and health sciencesMatrix (mathematics)SoftwareQuadratic equationMolecular descriptorAtom/bond-based molecular descriptorPhysical and Theoretical ChemistryAlgebraic numberSimple stochasticFree and open source softwarelcsh:T58.5-58.64lcsh:Information technologybusiness.industryQSARMutual probability matricesComputer Graphics and Computer-Aided DesignRotation formalisms in three dimensions0104 chemical sciencesComputer Science Applications010404 medicinal & biomolecular chemistry030104 developmental biologylcsh:QD1-999CheminformaticsBilinear and quadratic indicesbusinessNon-stochasticSoftwareQuBiLS-MASJournal of cheminformatics
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Stanozolol promotes osteogenic gene expression and apposition of bone mineral in vitro

2018

Abstract Stanozolol (ST) is a synthetic androgen with high anabolic potential. Although it is known that androgens play a positive role in bone metabolism, ST action on bone cells has not been sufficiently tested to support its clinical use for bone augmentation procedures. Objective: This study aimed to assess the effects of ST on osteogenic activity and gene expression in SaOS-2 cells. Material and Methods: SaOS-2 deposition of mineralizing matrix in response to increasing doses of ST (0-1000 nM) was evaluated through Alizarin Red S and Calcein Green staining techniques at 6, 12 and 24 days. Gene expression of runt-related transcription factor 2 (RUNX2), vitamin D receptor (VDR), osteopon…

0301 basic medicineTime FactorsBone matrixCore Binding Factor Alpha 1 SubunitReal-Time Polymerase Chain ReactionCalcitriol receptorBone remodelingCalcificationAndrology03 medical and health sciencesAnabolic AgentsCalcification PhysiologicOsteogenesisCell Line TumorBone cellHumansOsteonectinOsteopontinGeneral DentistryBone mineralAnalysis of VarianceOsteoblastsbiologyChemistryReproducibility of Resultslcsh:RK1-715RUNX2Apposition030104 developmental biologylcsh:DentistryLinear Modelsbiology.proteinAndrogensReceptors CalcitriolOriginal ArticleOsteopontinGene expressionOsteonectinStanozolol
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Adult Neurogenesis Is Sustained by Symmetric Self-Renewal and Differentiation

2018

Somatic stem cells have been identified in multiple adult tissues. Whether self-renewal occurs symmetrically or asymmetrically is key to understanding long-term stem cell maintenance and generation of progeny for cell replacement. In the adult mouse brain, neural stem cells (NSCs) (B1 cells) are retained in the walls of the lateral ventricles (ventricular-subventricular zone [V-SVZ]). The mechanism of B1 cell retention into adulthood for lifelong neurogenesis is unknown. Using multiple clonal labeling techniques, we show that the vast majority of B1 cells divide symmetrically. Whereas 20%-30% symmetrically self-renew and can remain in the niche for several months before generating neurons, …

0301 basic medicineTime FactorsNeurogenesis1.1 Normal biological development and functioningCellventricular-subventricular zoneMice TransgenicCell Counttime-lapse imagingSelf renewalBiologyself-renewalRegenerative MedicineMedical and Health SciencesTransgenicMice03 medical and health sciencesLateral ventricleslineage tracingNeural Stem CellsInterneuronsUnderpinning researchGeneticsmedicineAnimalsHumansCell Self RenewalB1 cellsagingdivision modeNeurogenesisNeurosciencesCell DifferentiationCell BiologyBiological SciencesStem Cell ResearchNeural stem cellCell biologysymmetric divisionB-1 cell030104 developmental biologymedicine.anatomical_structureNeurologicalMolecular MedicineStem Cell Research - Nonembryonic - Non-HumanStem cellDevelopmental BiologyAdult stem cell
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Iron-loaded transferrin (Tf) is detrimental whereas iron-free Tf confers protection against brain ischemia by modifying blood Tf saturation and subse…

2018

Despite transferrin being the main circulating carrier of iron in body fluids, and iron overload conditions being known to worsen stroke outcome through reactive oxygen species (ROS)-induced damage, the contribution of blood transferrin saturation (TSAT) to stroke brain damage is unknown. The objective of this study was to obtain evidence on whether TSAT determines the impact of experimental ischemic stroke on brain damage and whether iron-free transferrin (apotransferrin, ATf)-induced reduction of TSAT is neuroprotective. We found that experimental ischemic stroke promoted an early extravasation of circulating iron-loaded transferrin (holotransferrin, HTf) to the ischemic brain parenchyma.…

0301 basic medicineU-PAGE urea-polyacrylamide gel electrophoresisMaleClinical BiochemistryExperimental strokeBiochemistryBrain IschemiaBrain ischemia0302 clinical medicineADC apparent diffusion coefficientApotransferrinDWI diffusion-weighted imagingTANDEM-1 Thrombolysis and Deferoxamine in Middle Cerebral Artery Occlusion clinical trialrHTf rat HTfrATf rat ATflcsh:QH301-705.5chemistry.chemical_classificationNeuronslcsh:R5-920ChemistryTransferrinExtravasationNS21 a medium supplement to grow neuronspDAPK-1 phosphorylated anti-death-associated protein kinase 1NeuroprotectionStrokeWB Western blotFemalemedicine.symptomlcsh:Medicine (General)Research PaperhHTf human HTfPC12 cell line derived from a pheochromocytoma of the rat adrenal medullamedicine.medical_specialtyIron OverloadBBB blood-brain barrierNMDAR N-methyl-D-aspartate receptorDCF dihydrofluoresceinIronWGA wheat germ agglutininHTf holotransferrinTransferrin receptorBrain damageTfR transferrin receptorDeferoxamineNeuroprotectionPI propidium iodide03 medical and health sciencesBrain damageCM conditioned mediumROS reactive oxygen speciesInternal medicine4-HNE 4-hydroxynonenalTf transferrinReceptors TransferrinmedicineFeRhoNoxTM-1 probe to detect Fe2+AnimalsHumansATf apotransferrinCM-H2DCFDA 5-chloromethyl-27-dichlorodihydrofluorescein diacetateMCAO middle cerebral artery occlusionDMT-1 divalent metal transporterB-27 a medium supplement to grow neuronsReactive oxygen speciesNMDA N-methyl-D-aspartateTSAT blood transferrin saturationTransferrin saturationBlood transferrin saturation (TSAT)Organic ChemistryNIR near infraredReactive oxygen species (ROS)medicine.diseasepMCAO permanent middle cerebral artery occlusionRatsPWI perfusion-weighted imaging030104 developmental biologyEndocrinologylcsh:Biology (General)TransferrinDAPK-1 anti-death-associated protein kinaseOGD oxygen/glucose deprivationTTC 235-triphenyl-tetrazolium chlorideLipid PeroxidationMCA middle cerebral arteryApoproteinsReactive Oxygen SpeciesMRI magnetic resonance imagingtMCAO transient middle cerebral artery occlusion030217 neurology & neurosurgeryhATf human ATf
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Mosquito Magnet ® traps as a potential means of monitoring blackflies of medical and veterinary importance

2021

Mosquito Magnet® traps, deployed in widespread parts of England as part of nationwide mosquito surveillance projects, also caught blackflies. As many as 1242 blackflies were caught in a trapping session lasting 4 days. Principal among the species caught were Simulium equinum, Simulium lineatum and Simulium ornatum s.l. As S. ornatum s.l. is a vector that transmits Onchocerca linealis to cattle and S. equinum is responsible for dermatitis ('sweet itch') in cattle and horses, it is suggested that Mosquito Magnet® traps could be used to monitor and partially control these pests, as well as nuisance anthropophilic blackflies such as Simulium posticatum that can cause simuliidosis in southern En…

0301 basic medicineVeterinary medicineS1Simulium posticatum030231 tropical medicineCattle DiseasesMosquito VectorsDisease VectorsSimulium lineatumBiologyOnchocerciasisSimulium ornatumSimuliidosisPlagues Control03 medical and health sciences0302 clinical medicineparasitic diseasesAnimalsSimuliidaeHorsesVeterinàriaEcology Evolution Behavior and SystematicsGeneral VeterinaryfungiSimulium equinum030108 mycology & parasitologySweet itchCulicidaeInsect ScienceVector (epidemiology)CattleHorse DiseasesParasitologyOnchocercaNuisanceMedical and Veterinary Entomology
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Evaluation of Immunofluorescence Antibody Test Used for the Diagnosis of Canine Leishmaniasis in the Mediterranean Basin: A Systematic Review and Met…

2015

With an expected sensitivity (Se) of 96% and specificity (Sp) of 98%, the immunofluorescence antibody test (IFAT) is frequently used as a reference test to validate new diagnostic methods and estimate the canine leihmaniasis (CanL) true prevalence in the Mediterranean basin. To review the diagnostic accuracy of IFAT to diagnose CanL in this area with reference to its Se and Sp and elucidate the potential causes of their variations, a systematic review was conducted (31 studies for the 26-year period). Three IFAT validation methods stood out: the classical contingency table method, methods based on statistical models and those based on experimental studies. A variation in the IFAT Se and Sp …

0301 basic medicineVeterinary medicinelcsh:MedicineArtificial Gene Amplification and ExtensionPolymerase Chain ReactionMediterranean BasinMathematical and Statistical Techniques0302 clinical medicineZoonosesMedicine and Health SciencesCanine leishmaniasisDog Diseaseslcsh:ScienceLeishmaniasisMammalsMultidisciplinaryGeographymedicine.diagnostic_testMediterranean RegionGeographical regionsRegional geographyResearch AssessmentInfectious DiseasesFluorescent Antibody Technique DirectMeta-analysisVertebratesPhysical Sciencesmedicine.symptomStatistics (Mathematics)Research ArticleNeglected Tropical DiseasesSystematic Reviews030231 tropical medicine030106 microbiologyResearch and Analysis MethodsImmunofluorescenceSensitivity and SpecificityAsymptomatic03 medical and health sciencesDogsparasitic diseasesParasitic DiseasesmedicineAnimalsStatistical MethodsMolecular Biology TechniquesMolecular BiologyProtozoan Infectionsbusiness.industrylcsh:RfungiOrganismsReproducibility of ResultsBiology and Life SciencesLeishmaniasisGold standard (test)Tropical Diseasesmedicine.diseaseEarth sciencesParasitologyAmniotesImmunologyMediterranean BasinParasitologylcsh:QbusinessMathematicsMeta-AnalysisPLOS ONE
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