Search results for "infer"
showing 10 items of 1371 documents
Empirical Bayes improves assessments of diversity and similarity when overdispersion prevails in taxonomic counts with no covariates
2019
Abstract The assessment of diversity and similarity is relevant in monitoring the status of ecosystems. The respective indicators are based on the taxonomic composition of biological communities of interest, currently estimated through the proportions computed from sampling multivariate counts. In this work we present a novel method to estimate the taxonomic composition able to work even with a single sample and no covariates, when data are affected by overdispersion. The presence of overdispersion in taxonomic counts may be the result of significant environmental factors which are often unobservable but influence communities. Following the empirical Bayes approach, we combine a Bayesian mo…
Monitoring internet trade to inform species conservation actions
2017
Specimens, parts and products of threatened species are now commonly traded on the internet. This could threaten the survival of some wild populations if inadequately regulated. We outline two methods to monitor internet sales of threatened species in order to assess potential threats and inform conservation actions. Our first method combines systematic monitoring of online offers of plants for sale over the internet with consultation by experts experienced in identifying plants collected from the wild based on images of the specimens, species identity and details of the trade. Our second method utilises a computational model, trained using Bayesian techniques to records that have been clas…
Hierarchical log Gaussian Cox process for regeneration in uneven-aged forests
2021
We propose a hierarchical log Gaussian Cox process (LGCP) for point patterns, where a set of points x affects another set of points y but not vice versa. We use the model to investigate the effect of large trees to the locations of seedlings. In the model, every point in x has a parametric influence kernel or signal, which together form an influence field. Conditionally on the parameters, the influence field acts as a spatial covariate in the intensity of the model, and the intensity itself is a non-linear function of the parameters. Points outside the observation window may affect the influence field inside the window. We propose an edge correction to account for this missing data. The par…
Fossorial but widespread: the phylogeography of the common spadefoot toad (Pelobates fuscus), and the role of the Po Valley as a major source of gene…
2007
International audience; Pelobates fuscus is a fossorial amphibian that inhabits much of the European plain areas. To unveil traces of expansion and contraction events of the species' range, we sequenced 702 bp of the mitochondrial cytochrome b gene. To infer the population history we applied phylogeographical methods, such as nested clade phylogeographical analysis (NCPA), and used summary statistics to analyse population structure under a neutral model of evolution. Populations were assigned to different drainage systems and we tested hypotheses of explicit refugial models using information from analysis of molecular variance, nucleotide diversity, effective population size estimation, NCP…
Assortative mating by size without a size-based preference: the female-sooner norm as a mate-guarding criterion.
2013
7 pages; International audience; The study of size-assortative mating, or homogamy, is of great importance in speciation and sexual selection. However, the proximate mechanisms that lead to such patterns are poorly understood. Homogamy is often thought to come from a directional preference for larger mates. However, many constraints affect mating preferences and understanding the causes of size assortment requires a precise evaluation of the pair formation mechanism. Mate-guarding crustaceans are a model group for the study of homogamy. Males guard females until moult and reproduction. They are also unable to hold a female during their own moult and tend to pair with females closer to moult…
FeatherCNN: Fast Inference Computation with TensorGEMM on ARM Architectures
2020
Deep Learning is ubiquitous in a wide field of applications ranging from research to industry. In comparison to time-consuming iterative training of convolutional neural networks (CNNs), inference is a relatively lightweight operation making it amenable to execution on mobile devices. Nevertheless, lower latency and higher computation efficiency are crucial to allow for complex models and prolonged battery life. Addressing the aforementioned challenges, we propose FeatherCNN – a fast inference library for ARM CPUs – targeting the performance ceiling of mobile devices. FeatherCNN employs three key techniques: 1) A highly efficient TensorGEMM (generalized matrix multiplication) routine is app…
Predictive Model Markup Language (PMML) Representation of Bayesian Networks: An Application in Manufacturing
2018
International audience; Bayesian networks (BNs) represent a promising approach for the aggregation of multiple uncertainty sources in manufacturing networks and other engineering systems for the purposes of uncertainty quantification, risk analysis, and quality control. A standardized representation for BN models will aid in their communication and exchange across the web. This article presents an extension to the predictive model markup language (PMML) standard for the representation of a BN, which may consist of discrete variables, continuous variables, or their combination. The PMML standard is based on extensible markup language (XML) and used for the representation of analytical models…
Finite-time stability and stabilisation for a class of nonlinear systems with time-varying delay
2014
This paper is concerned with the problems of finite-time stability FTS and finite-time stabilisation for a class of nonlinear systems with time-varying delay, which can be represented by Takagi–Sugeno fuzzy system. Some new delay-dependent FTS conditions are provided and applied to the design problem of finite-time fuzzy controllers. First, based on an integral inequality and a fuzzy Lyapunov–Krasovskii functional, a delay-dependent FTS criterion is proposed for open-loop fuzzy system by introducing some free fuzzy weighting matrices, which are less conservative than other existing ones. Then, the parallel distributed compensation controller is designed to ensure FTS of the time-delay fuzzy…
Optimal control of discrete-time interval type-2 fuzzy-model-based systems with D-stability constraint and control saturation
2016
This paper investigates the optimal control problem for discrete-time interval type-2 (IT2) fuzzy systems with pole constraints. An IT2 fuzzy controller is characterized by two predefined functions, and the membership functions and the premise rules of the IT2 fuzzy controller can be chosen freely. The pole assignment is considered, which is constrained in a presented disk region. Based on Lyapunov stability theory, sufficient conditions of asymptotic stability with an H ∞ performance are obtained for the discrete-time IT2 fuzzy model based (FMB) system. Based on the criterion, the desired IT2 state-feedback controller is designed to guarantee that the closed-loop system is asymptotically s…
JOINT TOPOLOGY LEARNING AND GRAPH SIGNAL RECOVERY VIA KALMAN FILTER IN CAUSAL DATA PROCESSES
2018
In this paper, a joint graph-signal recovery approach is investigated when we have a set of noisy graph signals generated based on a causal graph process. By leveraging the Kalman filter framework, a three steps iterative algorithm is utilized to predict and update signal estimation as well as graph topology learning, called Topological Kalman Filter or TKF. Similar to the regular Kalman filter, we first predict the a posterior signal state based on the prior available data and then this prediction is updated and corrected based on the recently arrived measurement. But contrary to the conventional Kalman filter algorithm, we have no information of the transition matrix and hence we relate t…