0000000000001411

AUTHOR

Shigeo Katsumura

showing 3 related works from this author

N- and O-methylation of sphingomyelin markedly affects its membrane properties and interactions with cholesterol

2011

We have prepared palmitoyl sphingomyelin (PSM) analogs in which either the 2-NH was methylated to NMe, the 3-OH was methylated to OMe, or both were methylated simultaneously. The aim of the study was to determine how such modifications in the membrane interfacial region of the molecules affected interlipid interactions in bilayer membranes. Measuring DPH anisotropy in vesicle membranes prepared from the SM analogs, we observed that methylation decreased gel-phase stability and increased fluid phase disorder, when compared to PSM. Methylation of the 2-NH had the largest effect on gel-phase instability (T(m), was lowered by similar to 7 degrees C). Atomistic molecular dynamics simulations sho…

Hydrogen bondingLipid BilayersBiophysicsSterol partitioningMethylationBiochemistryMembrane Lipidschemistry.chemical_compoundAmideMolecular dynamics simulationOrganic chemistryMoleculeAcyl chain orderMolecular StructureHydrogen bondChemistryVesicleBilayerTemperatureta1182MethylationCell BiologySphingomyelinsKineticsSterolsCholesterolMembraneLateral domainsBiophysicsAnisotropySphingomyelinBiochimica et Biophysica Acta (BBA) - Biomembranes
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2NH and 3OH are crucial structural requirements in sphingomyelin for sticholysin II binding and pore formation in bilayer membranes.

2013

AbstractSticholysin II (StnII) is a pore-forming toxin from the sea anemone Stichodactyla heliantus which belongs to the large actinoporin family. The toxin binds to sphingomyelin (SM) containing membranes, and shows high binding specificity for this lipid. In this study, we have examined the role of the hydrogen bonding groups of the SM long-chain base (i.e., the 2NH and the 3OH) for StnII recognition. We prepared methylated SM-analogs which had reduced hydrogen bonding capability from 2NH and 3OH. Both surface plasmon resonance experiments, and isothermal titration calorimetry measurements indicated that StnII failed to bind to bilayers containing methylated SM-analogs, whereas clear bind…

Models MolecularPore Forming Cytotoxic ProteinsMembrane permeabilizationLipid BilayersBiophysicsCalorimetryta3111Biochemistrychemistry.chemical_compoundCnidarian VenomsAnimalsComputer SimulationLipid bilayerta116Binding selectivityUnilamellar LiposomesPhosphocholineBinding SitesMolecular StructureChemistryHydrogen bondVesicleta1182Isothermal titration calorimetryHydrogen BondingCell BiologySurface Plasmon ResonanceProtein Structure TertiarySphingomyelinsKineticsMembraneSea AnemonesBiochemistryMolecular dockingIsothermal titration calorimetryBiophysicsPhosphatidylcholinesSphingomyelinProtein BindingBiochimica et biophysica acta
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Structure–activity relationship of sphingomyelin analogs with sphingomyelinase from Bacillus cereus

2012

AbstractThe aim of this study was to examine how structural properties of different sphingomyelin (SM) analogs affected their substrate properties with sphingomyelinase (SMase) from Bacillus cereus. Using molecular docking and dynamics simulations (for SMase–SM complex), we then attempted to explain the relationship between SM structure and enzyme activity. With both micellar and monolayer substrates, 3O-methylated SM was found not to be degraded by the SMase. 2N-methylated SM was a substrate, but was degraded at about half the rate of its 2NH–SM control. PhytoPSM was readily hydrolyzed by the enzyme. PSM lacking one methyl in the phosphocholine head group was a good substrate, but PSM lack…

StereochemistryBiophysicsSphingomyelin phosphodiesteraseBiochemistryCatalysisSubstrate Specificitychemistry.chemical_compoundStructure-Activity RelationshipBacillus cereusBacterial ProteinsCatalytic DomainStructure–activity relationshipMagnesiumPhosphocholinechemistry.chemical_classificationbiologyMolecular StructureActive siteHead group methyl analogCell Biology2N-methylated sphingomyelinEnzyme assaySphingomyelinsEnzymeSphingomyelin PhosphodiesterasechemistryDocking (molecular)biology.proteinPhytosphingomyelinta11813O-methylated sphingomyelinSphingomyelinBiochimica et Biophysica Acta (BBA) - Biomembranes
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