0000000000039816

AUTHOR

Jan Baumgart

0000-0003-1996-4267

showing 35 related works from this author

Neurovascular EGFL7 regulates adult neurogenesis in the subventricular zone and thereby affects olfactory perception

2016

Adult neural stem cells reside in a specialized niche in the subventricular zone (SVZ). Throughout life they give rise to adult-born neurons in the olfactory bulb (OB), thus contributing to neural plasticity and pattern discrimination. Here, we show that the neurovascular protein EGFL7 is secreted by endothelial cells and neural stem cells (NSCs) of the SVZ to shape the vascular stem-cell niche. Loss of EGFL7 causes an accumulation of activated NSCs, which display enhanced activity and re-entry into the cell cycle. EGFL7 pushes activated NSCs towards quiescence and neuronal progeny towards differentiation. This is achieved by promoting Dll4-induced Notch signalling at the blood vessel-stem …

Male0301 basic medicineGeneral Physics and AstronomyNEURAL STEM-CELLSMOUSEMiceSUBEPENDYMAL ZONENeural Stem CellsLateral VentriclesLINEAGE PROGRESSIONBRAININ-VIVOMice KnockoutNeuronal PlasticityMultidisciplinaryCell CycleQNeurogenesisNICHEAnatomyNeural stem cellCell biologyAdult Stem Cellsmedicine.anatomical_structureSignal TransductionSTIMULATES NEUROGENESISEGF Family of ProteinsNeurogenesisScienceNotch signaling pathwaySubventricular zoneBiologyInhibitory postsynaptic potentialArticleGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesNeuroplasticitymedicineBiological neural networkAnimalsCalcium-Binding ProteinsProteinsGeneral ChemistryOlfactory PerceptionENDOTHELIAL-CELLSnervous system diseasesOlfactory bulbMice Inbred C57BLSELF-RENEWAL030104 developmental biologynervous system
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TOX3 regulates neural progenitor identity

2016

The human genomic locus for the transcription factor TOX3 has been implicated in susceptibility to restless legs syndrome and breast cancer in genome-wide association studies, but the physiological role of TOX3 remains largely unknown. We found Tox3 to be predominantly expressed in the developing mouse brain with a peak at embryonic day E14 where it co-localizes with the neural stem and progenitor markers Nestin and Sox2 in radial glia of the ventricular zone and intermediate progenitors of the subventricular zone. Tox3 is also expressed in neural progenitor cells obtained from the ganglionic eminence of E15 mice that express Nestin, and it specifically binds the Nestin promoter in chromati…

0301 basic medicineNeurogenesisBiophysicsNotch signaling pathwaySubventricular zoneMice TransgenicBiologyBiochemistryMice03 medical and health sciences0302 clinical medicineNeural Stem CellsSOX2PregnancyStructural BiologyGeneticsmedicineAnimalsRNA Small InterferingProgenitor cellMolecular BiologyCells Culturedreproductive and urinary physiologyNeuronsNeurogenesisGene Expression Regulation DevelopmentalNestinEmbryo MammalianMolecular biologyNeural stem cellMice Inbred C57BL030104 developmental biologymedicine.anatomical_structurenervous systemembryonic structuresTrans-ActivatorsFemaleStem cellApoptosis Regulatory ProteinsReceptors Progesterone030217 neurology & neurosurgeryBiochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
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Introducing Clicker Training as a Cognitive Enrichment for Laboratory Mice

2017

Establishing new refinement strategies in laboratory animal science is a central goal in fulfilling the requirements of Directive 2010/63/EU. Previous research determined a profound impact of gentle handling protocols on the well-being of laboratory mice. By introducing clicker training to the keeping of mice, not only do we promote the amicable treatment of mice, but we also enable them to experience cognitive enrichment. Clicker training is a form of positive reinforcement training using a conditioned secondary reinforcer, the "click" sound of a clicker, which serves as a time bridge between the strengthened behavior and an upcoming reward. The effective implementation of the clicker trai…

0301 basic medicinemedicine.medical_specialtyGeneral Chemical EngineeringMale miceAudiologyGeneral Biochemistry Genetics and Molecular BiologyMice03 medical and health sciencesCognitionLaboratory Animal SciencemedicineAnimalsReinforcementDaily routineBehaviorBehavior AnimalGeneral Immunology and MicrobiologyGeneral NeuroscienceCognitionFearClicker trainingClicker030104 developmental biologyModels AnimalPsychologyReinforcement PsychologyJournal of Visualized Experiments
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Profiling of lipid species by normal-phase liquid chromatography, nanoelectrospray ionization, and ion trap–orbitrap mass spectrometry

2013

Detailed analysis of lipid species can be challenging due to their structural diversity and wide concentration range in cells, tissues, and biofluids. To address these analytical challenges, we devised a reproducible, sensitive, and integrated lipidomics workflow based on normal-phase liquid chromatography-Fourier transform mass spectrometry (LC-FTMS) and LC-ITMS(2) (ion trap tandem mass spectrometry) for profiling and structural analysis of lipid species. The workflow uses a normal-phase LC system for efficient separation of apolar and polar lipid species combined with sensitive and specific analysis powered by a chip-based nanoelectrospray ion source and a hybrid ion trap-orbitrap mass sp…

Spectrometry Mass Electrospray IonizationCeramideBiophysicsAnalytical chemistryCeramidesTandem mass spectrometryMass spectrometryOrbitrapBiochemistrylaw.inventionMicechemistry.chemical_compoundTandem Mass Spectrometrylaw3T3-L1 CellsCerebellumIonizationLipidomicsAnimalsMolecular BiologyTriglyceridesChromatographyChemistryCell BiologyIon sourceMice Inbred C57BLIon trapHydrophobic and Hydrophilic InteractionsChromatography LiquidAnalytical Biochemistry
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Using multidimensional scaling in model choice for congenital oesophageal atresia: similarity analysis of human autopsy organ weights with those from…

2020

Swine models had been popular in paediatric oesophageal surgery in the past. Although being largely replaced by rodent models, swine experienced a revival with the establishment of minipig models. However, none of them has ever been investigated for similarity to humans. We conducted a pilot study to determine whether three-week old Pietrain piglets and three-month old Aachen Minipigs are suitable for experimental paediatric oesophageal atresia surgery. We tested the operation's feasibility, performed a necropsy, weighed organs, measured organ length and calculated relative weights and lengths, and measured laboratory parameters. We used multidimensional scaling to assess the similarity of…

Malemedicine.medical_specialtySwineSus scrofaAutopsyPilot Projects03 medical and health sciences0302 clinical medicineAnimal modelSimilarity analysisOesophageal surgerymedicineAnimalsHumansModel choiceMultidimensional scalingEsophageal AtresiaGeneral Veterinarybusiness.industryInfantOrgan Sizemedicine.diseaseDisease Models Animal030220 oncology & carcinogenesisAtresiaMultidimensional Scaling AnalysisSwine Miniature030211 gastroenterology & hepatologyAnimal Science and ZoologyFemaleRadiologybusinessLaboratory animals
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Environmental enrichment prevents pup mortality in laboratory mice.

2018

Early death of mouse pups is a commonly known problem in breeding mice colonies, which is still often regarded as ‘normal’ or is even overlooked due to the counting procedures applied. As reduced breeding performance probably indicates reduced well-being, this seems to be an underestimated welfare issue in laboratory mouse breeding. The present study compares the influence of three different forms of enrichment in breeding cages on infant survival rate and development of C57BL/6J mice. Our data reveal that lack of enrichment results in greater preweaning pup mortality, reduced weight and delayed development. Changing the environmental conditions after birth cannot prevent litter loss but i…

Litter (animal)0303 health sciencesEnvironmental enrichmentGeneral Veterinary040301 veterinary sciencesLaboratory mouseZoologyEarly death04 agricultural and veterinary sciencesBiologyAnimal Welfare0403 veterinary scienceMice Inbred C57BL03 medical and health sciencesMiceAnimals NewbornRisk FactorsAnimals LaboratoryAnimalsHumansAnimal Science and ZoologySurvival ratePerinatal Mortality030304 developmental biologyLaboratory animals
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C57BL/6-specific conditions for efficient in utero electroporation of the central nervous system.

2014

Abstract Background In utero electroporation is a fast an efficient tool to specifically address gene expression in the murine central nervous system. This technique was originally established in ICR/CD-1 outbred mice. Neuroanatomical differences between the different mouse strains and variations in gestation length require the optimization of the conditions for each strain to avoid severe complications. Furthermore the relevant position information is currently only scarcely standardized and not always easy to transfer to C57BL/6 mice. New method In this study we present an improved method for in utero electroporation of C57BL/6 including a detailed atlas that allows for specific and effic…

C57BL/6Central Nervous SystemPathologymedicine.medical_specialtyCentral nervous systemGreen Fluorescent ProteinsImproved methodTransfectionAtlases as TopicSpecies SpecificityCell MovementIn vivo transfectionmedicineAnimalsNeuronsMicroscopy ConfocalbiologyGeneral NeuroscienceElectroporationTransfectionbiology.organism_classificationCell biologyMice Inbred C57BLmedicine.anatomical_structureElectroporationIn uteroGestation lengthJournal of neuroscience methods
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Electrical stimulation with motility analysis of five parts of the gastrointestinal tract ; First evaluation of an experimental protocol in a porcine…

2018

Abstract Gastrointestinal (GI) motility disorders are frequent and clinically significant conditions with impairment of patient’s quality of life. Examples range from upper GI symptoms such as dysphagia and gastroparesis to lower GI manifestations, namely chronic-intestinal pseudo obstruction, diarrhea and constipation. Furthermore, postoperative motility disorders are common. Currently, available pharmacological or dietetic treatment options are limited. Since GI motility is based on myoelectric activity, electrical stimulation (ES) is a promising alternative. Numerous studies have demonstrated suitable pacing strategies and parameters in different GI segments. However, results of multiloc…

Gastrointestinal tractPathologymedicine.medical_specialtybusiness.industryBiomedical EngineeringMotilityStimulation03 medical and health sciences0302 clinical medicine030220 oncology & carcinogenesismedicine030211 gastroenterology & hepatologybusinesshuman activities
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Quantitative Spatial Analysis of the Mouse Brain Lipidome by Pressurized Liquid Extraction Surface Analysis

2014

Here we describe a novel surface sampling technique termed pressurized liquid extraction surface analysis (PLESA), which in combination with a dedicated high-resolution shotgun lipidomics routine enables both quantification and in-depth structural characterization of molecular lipid species extracted directly from tissue sections. PLESA uses a sealed and pressurized sampling probe that enables the use of chloroform-containing extraction solvents for efficient in situ lipid microextraction with a spatial resolution of 400 μm. Quantification of lipid species is achieved by the inclusion of internal lipid standards in the extraction solvent. The analysis of lipid microextracts by nanoelectrosp…

MaleIn situChromatographyChemistryLiquid-Liquid ExtractionExtraction (chemistry)Analytical chemistryBrainShotgun lipidomicsLipidomeMass spectrometryLipidsMass SpectrometryFourier transform ion cyclotron resonanceAnalytical ChemistryMice Inbred C57BLMiceMicroscopy FluorescenceFragmentation (mass spectrometry)Liquid–liquid extractionSpectroscopy Fourier Transform InfraredPressureAnimalsAnalytical Chemistry
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EGFL7 ligates αvβ3 integrin to enhance vessel formation

2013

Angiogenesis, defined as blood vessel formation from a preexisting vasculature, is governed by multiple signal cascades including integrin receptors, in particular integrin αVβ3. Here we identify the endothelial cell (EC)-secreted factor epidermal growth factor-like protein 7 (EGFL7) as a novel specific ligand of integrin αVβ3, thus providing mechanistic insight into its proangiogenic actions in vitro and in vivo. Specifically, EGFL7 attaches to the extracellular matrix and by its interaction with integrin αVβ3 increases the motility of EC, which allows EC to move on a sticky underground during vessel remodeling. We provide evidence that the deregulation of EGFL7 in zebrafish embryos leads …

EGF Family of ProteinsEmbryo NonmammalianAngiogenesisAmino Acid MotifsImmunologyIntegrinGene ExpressionMice NudeEndothelial Growth FactorsBiochemistryCollagen receptorMiceCell MovementCell AdhesionHuman Umbilical Vein Endothelial CellsmedicineAnimalsHumansImmunoprecipitationPhosphorylationZebrafishbiologyReverse Transcriptase Polymerase Chain ReactionChemistryCalcium-Binding ProteinsInfarction Middle Cerebral ArteryVenous plexusCell BiologyHematologyIntegrin alphaVbeta3ImmunohistochemistryExtracellular MatrixCell biologyEndothelial stem cellHEK293 Cellsmedicine.anatomical_structureIntegrin alpha MImmunologybiology.proteinBlood VesselsRNA InterferenceIntegrin beta 6Protein BindingBlood vesselBlood
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Analysis of Lipid Experiments (ALEX): A Software Framework for Analysis of High-Resolution Shotgun Lipidomics Data

2013

Global lipidomics analysis across large sample sizes produces high-content datasets that require dedicated software tools supporting lipid identification and quantification, efficient data management and lipidome visualization. Here we present a novel software-based platform for streamlined data processing, management and visualization of shotgun lipidomics data acquired using high-resolution Orbitrap mass spectrometry. The platform features the ALEX framework designed for automated identification and export of lipid species intensity directly from proprietary mass spectral data files, and an auxiliary workflow using database exploration tools for integration of sample information, computat…

Databases FactualComputer scienceData managementlcsh:MedicineBioinformaticscomputer.software_genreMass spectrometryMiceUser-Computer InterfaceData visualizationLipidomicsAnimalslcsh:ScienceInternetMultidisciplinarybusiness.industrylcsh:RBrainLipid-phosphate phosphataseShotgun lipidomicsLipidomeLipidsVisualizationSoftware frameworkKnockout mouselcsh:QData miningbusinesscomputerSoftwareResearch ArticlePLoS ONE
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Non-cell autonomous and non-catalytic activities of ATX in the developing brain

2015

The intricate formation of the cerebral cortex requires a well-coordinated series of events, which are regulated at the level of cell-autonomous and non-cell autonomous mechanisms. Whereas cell-autonomous mechanisms that regulate cortical development are well-studied, the non cell-autonomous mechanisms remain poorly understood. A non-biased screen allowed us to identify Autotaxin (ATX) as a non cell-autonomous regulator of neural stem cell proliferation. ATX (also known as ENPP2) is best known to catalyze lysophosphatidic acid (LPA) production. Our results demonstrate that ATX affects the localization and adhesion of neuronal progenitors in a cell autonomous and non-cell autonomous manner, …

autotaxinChemistryCortical developmentGeneral Neuroscienceradial gliaRegulatorin utero electroporationNeural stem cellNeuronal stem celllcsh:RC321-571LPAin utero electroporation.chemistry.chemical_compoundmedicine.anatomical_structureCerebral cortexLysophosphatidic acidmedicineOriginal Research ArticleNon catalyticAutotaxinProgenitor cellGeneNeurosciencelcsh:Neurosciences. Biological psychiatry. NeuropsychiatryNeuroscienceFrontiers in Neuroscience
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Bodyweight, not age, determines oesophageal length and breaking strength in rats

2018

Delayed primary repair is still the method of choice in the management of long-gap oesophageal atresia in many centres, but the timing of anastomoses varies. Some assume the infant's bodyweight to be an important factor, whereas others prefer age. We therefore aimed to clarify whether age or bodyweight determined oesophageal length in a rodent model.We explanted the oesophagi of 20 Sprague-Dawley rats, aged 15 to 444 days (n = two per time point), measured bodyweight, oesophageal length, weight, and linear breaking strength to measure tissue resilience. Univariate and multivariate regression analyses were conducted to determine the influence of age and bodyweight on oesophageal length and l…

Malemedicine.medical_specialtyMultivariate statisticsAnastomosisGastroenterologyBreaking strengthRats Sprague-Dawley03 medical and health sciencesEsophagus0302 clinical medicineTensile Strength030225 pediatricsInternal medicinemedicineAnimalsTime pointbusiness.industryPrimary anastomosisBody WeightAge FactorsRodent modelRegression analysisOrgan SizeGeneral Medicinemedicine.diseaseRats030220 oncology & carcinogenesisAtresiaPediatrics Perinatology and Child HealthFemaleSurgerybusinessJournal of Pediatric Surgery
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Phf21b imprints the spatiotemporal epigenetic switch essential for neural stem cell differentiation.

2019

Cerebral cortical development in mammals involves a highly complex and organized set of events including the transition of neural stem and progenitor cells (NSCs) from proliferative to differentiative divisions to generate neurons. Despite progress, the spatiotemporal regulation of this proliferation-differentiation switch during neurogenesis and the upstream epigenetic triggers remain poorly known. Here we report a cortex-specific PHD finger protein, Phf21b, which is highly expressed in the neurogenic phase of cortical development and gets induced as NSCs begin to differentiate. Depletion of Phf21b in vivo inhibited neuronal differentiation as cortical progenitors lacking Phf21b were retai…

NeurogenesisEpigenesis Genetic03 medical and health sciencesMice0302 clinical medicineNeural Stem CellsGeneticsAnimalsHumansEpigeneticsProgenitor cell030304 developmental biologyRegulation of gene expressionCerebral Cortex0303 health sciencesbiologyHistone deacetylase 2NeurogenesisGene Expression Regulation DevelopmentalCell DifferentiationNeural stem cellCell biologyMice Inbred C57BL030220 oncology & carcinogenesisbiology.proteinDemethylaseHistone deacetylaseDevelopmental BiologyResearch PaperGenesdevelopment
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Five-fold Gastrointestinal Electrical Stimulation With Electromyography-based Activity Analysis: Towards Multilocular Theranostic Intestinal Implants

2019

Background/aims Motility disorders are common and may affect the entire gastrointestinal (GI) tract but current treatment is limited. Multilocular sensing of GI electrical activity and variable electrical stimulation (ES) is a promising option. The aim of our study is to investigate the effects of adjustable ES on poststimulatory spike activities in 5 GI segments. Methods Six acute porcine experiments were performed with direct ES by 4 ES parameter sets (30 seconds, 25 mA, 500 microseconds or 1000 microseconds, 30 Hz or 130 Hz) applied through subserosal electrodes in the stomach, duodenum, ileum, jejunum, and colon. Multi-channel electromyography of baseline and post-stimulatory GI electri…

medicine.medical_specialtyGastrointestinal tractmedicine.diagnostic_testElectromyographybusiness.industryStomachGastroenterologyMotilityStimulationIleumElectromyographyGastroenterologyJejunummedicine.anatomical_structureGastrointestinal tractInternal medicinemedicineDuodenumElectric stimulationOriginal ArticleNeurology (clinical)businessJournal of Neurogastroenterology and Motility
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Mutant Plasticity Related Gene 1 (PRG1) acts as a potential modifier in SCN1A related epilepsy

2018

ABSTRACTPlasticity related gene 1 encodes a cerebral neuron-specific synaptic transmembrane protein that modulates hippocampal excitatory transmission on glutamatergic neurons. In mice, homozygous Prg1-deficiency results in juvenile epilepsy. Screening a cohort of 18 patients with infantile spasms (West syndrome), we identified one patient with a heterozygous mutation in the highly conserved third extracellular phosphatase domain (p.T299S). The functional relevance of this mutation was verified by in-utero electroporation of a mutant Prg1 construct into neurons of Prg1-knockout embryos, and the subsequent inability of hippocampal neurons to rescue the knockout phenotype on the single cell l…

EpilepsyMutationGlutamatergicMutantWild typemedicineHippocampal formationBiologymedicine.diseasemedicine.disease_causePhenotypeMolecular biologyExome sequencing
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Comparing Aachen Minipigs and Pietrain Piglets as Models of Experimental Pediatric Urology to Human Reference Data

2020

<b><i>Introduction:</i></b> Swine had special roles in the development of minimally invasive procedures to treat vesicoureteral reflux, and minipigs have been gaining ground in recent years in experimental pediatric urology as they combine small size with less vulnerable adult physiology, but their suitability as a model has never been assessed. We therefore compared a landrace piglet with a juvenile minipig to elucidate comparability. <b><i>Methods:</i></b> We evaluated five 3-week old Pietrain piglets and five 3-month old Aachen Minipigs as representatives of landrace and minipig models based on their expected bodyweight being similar to a n…

medicine.medical_specialtySwinebusiness.industryUrologyTechnical failureUrologyRenal functionOrgan SizeKidneyPediatricsPediatric urologyAdditional researchDisease Models Animal03 medical and health sciences0302 clinical medicineReference Values030220 oncology & carcinogenesismedicineAnimalsHumansSwine Miniature030211 gastroenterology & hepatologySurgerybusinessMinimally invasive proceduresEuropean Surgical Research
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Model of Wound Healing for Esophagogastric Anastomoses in Rats

2011

<b><i>Background:</i></b> Anastomotic leakage after esophageal surgery is a significant cause of morbidity and mortality. Postoperative leakage of esophagogastric anastomosis has been reported in 2–30% of surgical patient, resulting in an increased need for reoperation and a high risk of subsequent esophageal stricture formation and fistula. So far, experimental investigations on major factors influencing the healing of esophageal anastomoses, e.g. neovascularization and collagen deposition, have been hindered by the lack of a functional rodent model. <b><i>Methods:</i></b> We developed a novel technique of gastric tube formation followed by e…

MaleTube formationWound Healingmedicine.medical_specialtybusiness.industryFistulaAnastomosis SurgicalStomachAnastomosismedicine.diseaseRatsSurgeryNeovascularizationStomach surgeryEsophagusRats Inbred BNModels AnimalEsophagogastric anastomosisEsophageal strictureAnimalsMedicineSurgerymedicine.symptombusinessWound healingEuropean Surgical Research
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Translational development and pre-clinical evaluation of prototype gastrointestinal mock-up devices: only robotic placement of plastic?

2020

Background: The aim of this study was to address the vision of wireless theranostic devices distributed along the gastrointestinal (GI) tract by defining design requirements, developing prototype mock-ups, and establishing a minimally invasive surgical approach for the implantation process. Methods: Questionnaires for contextual analysis and use case scenarios addressing the technical issues of an implantable GI device, a possible scenario for implantation, preparation and calibration of a device, and therapeutic usage by professionals and patients were completed and discussed by an interdisciplinary team of surgeons, engineers, and product designers. Two acute porcine experiments were cond…

medicine.medical_specialtySwineComputer scienceeducation0206 medical engineeringBiomedical Engineering02 engineering and technology01 natural sciencesTranslational Research BiomedicalRobotic Surgical ProceduresmedicineAnimalsMinimally Invasive Surgical ProceduresMedical physics010401 analytical chemistryRobotic Surgical ProceduresEquipment DesignProstheses and ImplantsGeneral Medicineequipment and supplies020601 biomedical engineering0104 chemical sciencesGastrointestinal TractPrinting Three-DimensionalPlasticsClinical evaluationJournal of Medical Engineering & Technology
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miR-124-regulated RhoG reduces neuronal process complexity via ELMO/Dock180/Rac1 and Cdc42 signalling

2012

The small GTPase RhoG plays a central role in actin remodelling during diverse biological processes such as neurite outgrowth, cell migration, phagocytosis of apoptotic cells, and the invasion of pathogenic bacteria. Although it is known that RhoG stimulates neurite outgrowth in the rat pheochromocytoma PC12 cell line, neither the physiological function nor the regulation of this GTPase in neuronal differentiation is clear. Here, we identify RhoG as an inhibitor of neuronal process complexity, which is regulated by the microRNA miR-124. We find that RhoG inhibits dendritic branching in hippocampal neurons in vitro and in vivo. RhoG also inhibits axonal branching, acting via an ELMO/Dock180/…

General Immunology and MicrobiologyNeuriteDock180General NeuroscienceCell migrationRAC1CDC42GTPaseBiologyGeneral Biochemistry Genetics and Molecular BiologyCell biologynervous systemSmall GTPaseRhoGMolecular BiologyThe EMBO Journal
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In‐depth protein profiling of the postsynaptic density from mouse hippocampus using data‐independent acquisition proteomics

2014

Located at neuronal terminals, the postsynaptic density (PSD) is a highly complex network of cytoskeletal scaffolding and signaling proteins responsible for the transduction and modulation of glutamatergic signaling between neurons. Using ion-mobility enhanced data-independent label-free LC-MS/MS, we established a reference proteome of crude synaptosomes, synaptic junctions, and PSD derived from mouse hippocampus including TOP3-based absolute quantification values for identified proteins. The final dataset across all fractions comprised 49 491 peptides corresponding to 4558 protein groups. Of these, 2102 protein groups were identified in highly purified PSD in at least two biological replic…

ProteomicsPost-Synaptic DensityProteinsHippocampal formationBiologyProteomicsHippocampusBiochemistryCell biologyMiceTransduction (genetics)Glutamatergicnervous systemProteomeAnimalsData-independent acquisitionCytoskeletonMolecular BiologyPostsynaptic densityPROTEOMICS
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Plasticity-Related Gene 1 Affects Mouse Barrel Cortex Function via Strengthening of Glutamatergic Thalamocortical Transmission

2016

Plasticity-related gene-1 (PRG-1) is a brain-specific protein that modulates glutamatergic synaptic transmission. Here we investigated the functional role of PRG-1 in adolescent and adult mouse barrel cortex both in vitro and in vivo. Compared with wild-type (WT) animals, PRG-1-deficient (KO) mice showed specific behavioral deficits in tests assessing sensorimotor integration and whisker-based sensory discrimination as shown in the beam balance/walking test and sandpaper tactile discrimination test, respectively. At P25-31, spontaneous network activity in the barrel cortex in vivo was higher in KO mice compared with WT littermates, but not at P16-19. At P16-19, sensory evoked cortical respo…

Male0301 basic medicinePatch-Clamp TechniquesCognitive NeuroscienceThalamusGlutamic AcidNerve Tissue ProteinsStimulationSensory systemWalkingNeurotransmissionBiologySomatosensory systempatch-clamp recordingsSynaptic TransmissionTissue Culture Techniques03 medical and health sciencesCellular and Molecular NeuroscienceGlutamatergic0302 clinical medicineThalamusNeural PathwaysNeuroplasticityAnimalsPostural BalanceMice KnockoutNeuronsNeuronal Plasticitybehaviorin vitroArticlesSomatosensory CortexBarrel cortexnetwork activityin vivo030104 developmental biologyTouch PerceptionVibrissaeCalmodulin-Binding ProteinsFemaleNeuroscience030217 neurology & neurosurgeryCerebral Cortex
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Loss of organic cation transporter 3 (Oct3) leads to enhanced proliferation and hepatocarcinogenesis

2017

// Johanna Vollmar 1 , Anja Lautem 2 , Ellen Closs 3 , Detlef Schuppan 4 , Yong Ook Kim 4 , Daniel Grimm 1 , Jens U. Marquardt 1 , Peter Fuchs 1 , Beate K. Straub 5 , Arno Schad 5 , Dirk Grundemann 6 , Jorn M. Schattenberg 1 , Nadine Gehrke 1 , Marcus A. Worns 1 , Jan Baumgart 7 , Peter R. Galle 1 and Tim Zimmermann 1 1 Department of Internal Medicine, Gastroenterology and Hepatology, University Medical Center, Johannes Gutenberg-University Mainz, Mainz, Germany 2 Department of Hepatobiliary and Transplantation Surgery, University Medical Center, Johannes Gutenberg-University Mainz, Mainz, Germany 3 Department of Pharmacology, University Medical Center, Johannes Gutenberg-University Mainz, …

0301 basic medicineCyclin DSLC22A303 medical and health sciences0302 clinical medicinemedicineUniversity medicalSLC22A3OCT3 knockoutSLC22A1Organic cation transport proteinsbiologyTumor sizeKinasebusiness.industryhepatocarcinogenesisorganic cation transportermedicine.diseaseMolecular biologyhumanities030104 developmental biologyOncology030220 oncology & carcinogenesisHepatocellular carcinomabiology.proteinbusinessAfter treatmentResearch PaperOncotarget
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LPA1, LPA2, LPA4, and LPA6receptor expression during mouse brain development

2019

Background:LPA is a small bioactive phospholipid that acts as an extracellularsignaling molecule and is involved in cellular processes, including cell prolifera-tion, migration, and differentiation. LPA acts by binding and activating at least sixknown G protein–coupled receptors: LPA1–6. In recent years, LPA has beensuggested to play an important role both in normal neuronal development andunder pathological conditions in the nervous system. Results:We show the expression pattern of LPA receptors during mouse braindevelopment by using qRT-PCR, in situ hybridization, and immunocytochemistry.Only LPA1,LPA2,LPA4,and LPA6 mRNA transcripts were detected throughoutdevelopment stages from embryoni…

0301 basic medicineNervous systemMessenger RNANeocortexReceptor expressionIn situ hybridizationHippocampal formationBiologyCell biology03 medical and health scienceschemistry.chemical_compound030104 developmental biology0302 clinical medicinemedicine.anatomical_structurechemistryLysophosphatidic acidmedicinelipids (amino acids peptides and proteins)Receptor030217 neurology & neurosurgeryDevelopmental BiologyDevelopmental Dynamics
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NECAB2 participates in an endosomal pathway of mitochondrial stress response at striatal synapses

2021

Synaptic signaling depends on ATP generated by mitochondria. Due to extensive connectivity, the striatum is especially vulnerable to mitochondrial dysfunction and thus requires efficient mitochondrial quality control. We found that the neuronal calcium-binding protein NECAB2 ensures synaptic function in the striatum by increasing mitochondrial efficiency. NECAB2 associates with early endosomes and mitochondria at striatal synapses. Loss of NECAB2 dysregulates proteins of the endosomal ESCRT machinery and oxidative phosphorylation. Mitochondria from NECAB2-deficient mice are more abundant but less efficient. These mitochondria exhibit increased respiration and superoxide production but produ…

Sensory gatingEndosomeChemistrySuperoxideOxidative phosphorylationStriatumMitochondrionmedicine.disease_causeCell biologychemistry.chemical_compoundmedicine.anatomical_structureddc:570medicineSynaptic signalingOxidative stress
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Health-Relevant Phenotypes in the Offspring of Mice Given CAR Activators Prior to Pregnancy

2018

Hepatic induction in response to drugs and environmental chemicals affects drug therapies and energy metabolism. We investigated whether the induction is transmitted to the offspring. We injected 3-day- and 6-week-old F0 female mice with TCPOBOP, an activator of the nuclear receptor constitutive androstane receptor (CAR, NR1I3), and mated them 1-6 weeks afterward. We detected in the offspring long-lasting alterations of CAR-mediated drug disposition, energy metabolism, and lipid profile. The transmission to the first filial generation (F1) was mediated by TCPOBOP transfer from the F0 adipose tissue via milk, as revealed by embryo transfer, crossfostering experiments, and liquid chromatograp…

0301 basic medicinemedicine.medical_specialtyPyridinesOffspringDevelopmental toxicityReceptors Cytoplasmic and NuclearPharmaceutical ScienceAdipose tissueBiologyMice03 medical and health sciencesPregnancyInternal medicineConstitutive androstane receptormedicineAnimalsReceptorConstitutive Androstane ReceptorPharmacologyPregnancymedicine.diseaseEmbryo transferMice Inbred C57BLPhenotype030104 developmental biologyEndocrinologyAdipose TissueLiverNuclear receptorFemaleDrug Metabolism and Disposition
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An unconventional role for miRNA: let-7 activates Toll-like receptor 7 and causes neurodegeneration

2011

Activation of innate immune receptors by host-derived factors exacerbates CNS damage, but the identity of these factors remains elusive. We uncovered an unconventional role for the microRNA let-7, a highly abundant regulator of gene expression in the CNS, in which extracellular let-7 activates the RNA-sensing Toll-like receptor (TLR) 7 and induces neurodegeneration through neuronal TLR7. Cerebrospinal fluid (CSF) from individuals with Alzheimer’s disease contains increased amounts of let-7b, and extracellular introduction of let-7b into the CSF of wild-type mice by intrathecal injection resulted in neurodegeneration. Mice lacking TLR7 were resistant to this neurodegenerative effect, but thi…

Cell signalingApoptosisElectrophoretic Mobility Shift AssayBiologyReal-Time Polymerase Chain ReactionMiceAlzheimer DiseasemicroRNAExtracellularmedicineAnimalsHumansReceptorIn Situ HybridizationMice KnockoutNeuronsToll-like receptorMembrane GlycoproteinsMicroscopy ConfocalInnate immune systemGeneral NeuroscienceNeurodegenerationBrainvirus diseasesTLR7medicine.diseaseImmunohistochemistryMice Inbred C57BLMicroRNAsHEK293 CellsToll-Like Receptor 7Nerve DegenerationCancer researchSignal TransductionNature Neuroscience
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Molecular cause and functional impact of altered synaptic lipid signaling due to a prg‐1 gene SNP

2015

Loss of plasticity-related gene 1 (PRG-1), which regulates synaptic phospholipid signaling, leads to hyperexcitability via increased glutamate release altering excitation/inhibition (E/I) balance in cortical networks. A recently reported SNP in prg-1 (R345T/ mutPRG-1) affects ~5 million European and US citizens in a monoallelic variant. Our studies show that this mutation leads to a loss-of-PRG-1 function at the synapse due to its inability to control lysophosphatidic acid (LPA) levels via a cellular uptake mechanism which appears to depend on proper glycosylation altered by this SNP. PRG-1 +/ mice, which are animal correlates of human PRG-1 +/mut carriers, showed an altered cortical networ…

0301 basic medicineGeneticseducation.field_of_studySensory gatingPopulationGlutamate receptorLipid signalingBiologyCell biologySynapse03 medical and health scienceschemistry.chemical_compound030104 developmental biology0302 clinical medicinemedicine.anatomical_structurechemistryLysophosphatidic acidmedicineMolecular MedicineSignal transductionAutotaxineducation030217 neurology & neurosurgeryEMBO Molecular Medicine
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Robotic Setup Promises Consistent Effects of Multilocular Gastrointestinal Electrical Stimulation: First Results of a Porcine Study

2020

<b><i>Background:</i></b> Electrical stimulation (ES) of several gastrointestinal (GI) segments is a promising therapeutic option for multilocular GI dysmotility, but conventional surgical access by laparotomy involves a high degree of tissue trauma. We evaluated a minimally invasive surgical approach using a robotic surgical system to perform electromyographic (EMG) recordings and ES of several porcine GI segments, comparing these data to an open surgical approach by laparotomy. <b><i>Materials and Methods:</i></b> In 5 acute porcine experiments, we placed multiple electrodes on the stomach, duodenum, jejunum, ileum, and colon. Three experime…

MaleSwinemedicine.medical_treatmentStimulationElectromyographyJejunumLaparotomyAnimalsMinimally Invasive Surgical ProceduresMedicineSurgical approachmedicine.diagnostic_testElectromyographybusiness.industryStomachRoboticsElectric StimulationSurgical accessGastrointestinal Tractmedicine.anatomical_structureDuodenumSurgerybusinessNuclear medicinehuman activitiesResearch ArticleEuropean Surgical Research
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Motility analysis by means of video tracked markers

2018

Abstract The motility of the gastrointestinal tract is crucial for digestive activity and dysfunction can lead to severe disease pattern. A method for analysing the motility is needed when treatment approaches shall be evaluated. Therefore markers attached to different locations on the stomach and the bowel of pigs are video tracked in this research study. The markers are designed to provide a high contrast and have an adhesive side for fixation. Above the operation field a video camera has been placed to film the markers during the procedure. To analyse the video data a special algorithm has been implemented. The algorithm requires a registration process at the beginning of each recording …

motility analysisbowel movementBiomedical EngineeringComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISIONRMotilityMedicineBiologyvideo trackingCell biologyCurrent Directions in Biomedical Engineering
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FRET based ratiometric Ca(2+) imaging to investigate immune-mediated neuronal and axonal damage processes in experimental autoimmune encephalomyeliti…

2015

Abstract Background Irreversible axonal and neuronal damage are the correlate of disability in patients suffering from multiple sclerosis (MS). A sustained increase of cytoplasmic free [Ca2+] is a common upstream event of many neuronal and axonal damage processes and could represent an early and potentially reversible step. New method We propose a method to specifically analyze the neurodegenerative aspects of experimental autoimmune encephalomyelitis by Forster Resonance Energy Transfer (FRET) imaging of neuronal and axonal Ca2+ dynamics by two-photon laser scanning microscopy (TPLSM). Results Using the genetically encoded Ca2+ sensor TN-XXL expressed in neurons and their corresponding axo…

NeuronsEncephalomyelitis Autoimmune ExperimentalMicroscopy ConfocalChemistryGeneral NeuroscienceMultiple sclerosisNeurodegenerationCellExperimental autoimmune encephalomyelitismedicine.diseaseAxonsMicemedicine.anatomical_structureFörster resonance energy transfernervous systemIn vivoCytoplasmmedicineFluorescence Resonance Energy TransferAnimalsCalciumAxonNeuroscienceBrain StemJournal of neuroscience methods
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Sex represents a relevant interaction in Sprague–Dawley rats: the example of oesophageal length*

2020

Background: 8-week old Sprague Dawley rats represent the standard rodent model of oesophageal surgery, which is challenging and might be eased by larger oesophageal lengths. Therefore, we aimed to ...

Animal modelOesophageal surgerybusiness.industryGeneral NeuroscienceSprague dawley ratsPhysiologyMedicineRodent modelGeneral Agricultural and Biological SciencesbusinessGeneral Biochemistry Genetics and Molecular BiologyAll Life
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Using Clicker Training and Social Observation to Teach Rats to Voluntarily Change Cages.

2018

Cage cleaning is a routinely performed husbandry procedure and is known to induce stress in laboratory rats. As stress can have a negative impact on well-being and can affect the comparability and reproducibility of research results, the amount of stress experienced by laboratory animals should be minimized and avoided when possible. Further, the direct contact between the rat and animal caretaker during the cage change bears hygiene risks and therefore possibly negatively impacts the well-being of the rats and the quality of the research. Our protocol aims to improve the routinely performed cage changing procedure. For this reason, we present a feasible protocol that enables rats to learn …

0301 basic medicineMalemedicine.medical_specialtyComputer scienceTrainerGeneral Chemical EngineeringeducationGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesPhysical medicine and rehabilitationmedicineObservational learningAnimalsLearningAnimal HusbandrySocial BehaviorProtocol (science)BehaviorGeneral Immunology and MicrobiologyBehavior AnimalGeneral NeuroscienceReproducibility of ResultsClicker trainingHousing AnimalRats030104 developmental biologyTraining phaseConditioning OperantJournal of visualized experiments : JoVE
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Supplemental material for Environmental enrichment prevents pup mortality in laboratory mice

2018

Supplemental material for Environmental enrichment prevents pup mortality in laboratory mice by Charlotte S Leidinger, Christa Thöne-Reineke, Nadine Baumgart and Jan Baumgart in Laboratory Animals

70706 Veterinary MedicineFOS: Veterinary sciencesFOS: Biological sciences69999 Biological Sciences not elsewhere classified
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Translational development and pre-clinical evaluation of prototype gastrointestinal mock-up devices: only robotic placement of plastic?

2020

Background: The aim of this study was to address the vision of wireless theranostic devices distributed along the gastrointestinal (GI) tract by defining design requirements, developing prototype mock-ups, and establishing a minimally invasive surgical approach for the implantation process. Methods: Questionnaires for contextual analysis and use case scenarios addressing the technical issues of an implantable GI device, a possible scenario for implantation, preparation and calibration of a device, and therapeutic usage by professionals and patients were completed and discussed by an interdisciplinary team of surgeons, engineers, and product designers. Two acute porcine experiments were cond…

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