0000000000143279
AUTHOR
Ke Zhang
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
Background Gene expression profiling is being widely applied in cancer research to identify biomarkers for clinical endpoint prediction. Since RNA-seq provides a powerful tool for transcriptome-based applications beyond the limitations of microarrays, we sought to systematically evaluate the performance of RNA-seq-based and microarray-based classifiers in this MAQC-III/SEQC study for clinical endpoint prediction using neuroblastoma as a model. Results We generate gene expression profiles from 498 primary neuroblastomas using both RNA-seq and 44 k microarrays. Characterization of the neuroblastoma transcriptome by RNA-seq reveals that more than 48,000 genes and 200,000 transcripts are being …
Analysis of drought and vulnerability in the North Darfur region of Sudan
North Darfur of Sudan is located on the edge of the Sahara Desert and endures frequent droughts due to water shortages and high summer temperatures. Monitoring and understanding drought characteristics are essential for integrated drought risk mitigation and prevetion of land degradation. This study evaluates drought conditions in North Darfur by analyzing the spatiotemporal distribution of drought using three drought indices (Standardized Precipitation Index, Vegetation Condition Index, and Soil Moisture Content Index) and their combined drought index (CDI) from 2004 to 2013. Biophysical and socioeconomic indicators are further used to measure vulnerability to drought risk and its three co…
Collective Effects of Organic Molecules based on Holstein-Tavis-Cummings Model
We study the collective effects of an ensemble of organic molecules confined in an optical cavity based on Holstein-Tavis-Cummings model. By using the quantum Langevin approach and adiabatically eliminating the degree of freedom of the vibrational motion, we analytically obtain the expression of the cavity transmission spectrum to analyze the features of polaritonic states. As an application, we show that the dependence for the frequency shift of the lower polaritonic state on the number of molecules can be used in the detection of the ultra-cold molecules. We also numerically analyze the fluorescence spectrum. The variation of the spectral profile with various numbers of molecules gives si…
Detection of missing low-lying atomic states in actinium
Two lowest-energy odd-parity atomic levels of actinium, 7s^27p 2P^o_1/2, 7s^27p 2P^o_3/2, were observed via two-step resonant laser-ionization spectroscopy and their respective energies were measured to be 7477.36(4) cm^-1 and 12 276.59(2) cm^-1. The lifetimes of these states were determined as 668(11) ns and 255(7) ns, respectively. In addition, these properties were calculated using a hybrid approach that combines configuration interaction and coupled-cluster methods in good agreement. The data are of relevance for understanding the complex atomic spectra of actinides and for developing efficient laser-cooling and ionization schemes for actinium, with possible applications for high-purity…
Detection of the Lowest-Lying Odd-Parity Atomic Levels in Actinium
Two lowest-energy odd-parity atomic levels of actinium, 7s27pP21/2o, 7s27pP23/2o, were observed via two-step resonant laser-ionization spectroscopy and their respective energies were measured to be 7477.36(4) and 12 276.59(2) cm-1. The lifetimes of these states were determined as 668(11) and 255(7) ns, respectively. In addition, we observed the effect of the hyperfine structure on the line for the transition to P23/2o. These properties were calculated using a hybrid approach that combines configuration interaction and coupled-cluster methods, in good agreement with the experiment. The data are of relevance for understanding the complex atomic spectra of actinides and for developing efficien…
Layered Thiadiazoloquinoxaline-Containing Long Pyrene-Fused N-Heteroacenes
Three thiadiazoloquinoxaline-containing long pyrene-fused N-heteroacenes with 8, 13, and 18 rings were designed and synthesized. They show high electron affinities (EAs) of approximately 4.1 eV, which were derived from the onset of the reduction peaks in cyclic voltammetry. Crystal structure analysis revealed in-plane extension through close contacts between thiadiazole units as well as layered packing, enabling in-plane and interlayer electron transport. Organic field-effect transistor devices provided electron mobilities, which suggest a potential way to enhance the charge transport in long N-heteroacenes.
Probing fast oscillating scalar dark matter with atoms and molecules
Light scalar Dark Matter with scalar couplings to matter is expected within several scenarios to induce variations in the fundamental constants of nature. Such variations can be searched for, among other ways, via atomic spectroscopy. Sensitive atomic observables arise primarily due to possible changes in the fine-structure constant or the electron mass. Most of the searches to date have focused on slow variations of the constants (i.e. modulation frequencies $<$ 1 Hz). In a recent experiment \mbox{[Phys. Rev. Lett. 123, 141102 (2019)]} called WReSL (Weekend Relaxion-Search Laboratory), we reported on a direct search for rapid variations in the radio-frequency band. Such a search is particu…
Biomarkers and clinical characteristics of autoimmune chronic spontaneous urticaria: Results of the PURIST Study.
Background: Autoimmune chronic spontaneous urticaria (aiCSU) is an important subtype of chronic spontaneous urticaria (CSU) in which functional IgG autoantibodies to IgE or its high-affinity receptor (FcεRI) induces mast cell degranulation and subsequent symptom development. However, it has not been tightly characterized. This study aimed to better define the clinical and immunological features and to explore potential biomarkers of aiCSU. Methods: This was a multinational, multicenter study of 182 CSU patients. The clinical features studied included: urticaria activity and impact (UAS7 and quality of life); autologous serum skin test (ASST); IgG anti-FcεRI and IgG anti-IgE; IgG-anti-thyrop…
CCDC 2075969: Experimental Crystal Structure Determination
Related Article: Marta Martínez‐Abadía, Karol Strutyński, Belén Lerma‐Berlanga, Craig T. Stoppiello, Andrei N. Khlobystov, Carlos Martí‐Gastaldo, Akinori Saeki, Manuel Melle‐Franco, Aurelio Mateo‐Alonso|2021|Angew.Chem.,Int.Ed.|60|9941|doi:10.1002/anie.202100434
CCDC 2075967: Experimental Crystal Structure Determination
Related Article: Marta Martínez‐Abadía, Karol Strutyński, Belén Lerma‐Berlanga, Craig T. Stoppiello, Andrei N. Khlobystov, Carlos Martí‐Gastaldo, Akinori Saeki, Manuel Melle‐Franco, Aurelio Mateo‐Alonso|2021|Angew.Chem.,Int.Ed.|60|9941|doi:10.1002/anie.202100434
CCDC 2075968: Experimental Crystal Structure Determination
Related Article: Marta Martínez‐Abadía, Karol Strutyński, Belén Lerma‐Berlanga, Craig T. Stoppiello, Andrei N. Khlobystov, Carlos Martí‐Gastaldo, Akinori Saeki, Manuel Melle‐Franco, Aurelio Mateo‐Alonso|2021|Angew.Chem.,Int.Ed.|60|9941|doi:10.1002/anie.202100434