0000000000161228

AUTHOR

Renato Batel

showing 54 related works from this author

Phenylalanine hydroxylase from the sponge Geodia cydonium: implication for allorecognition and evolution of aromatic amino acid HYDROXYLASESfn1fn1The…

1998

Abstract The prophenoloxidase activating system is a defense system, frequently reported both in protostomes and in deuterostomes. The final product of the phenoloxidase activity is melanin which is ubiquitously present throughout the metazoan kingdom. The melanin synthesis pathway starts with the amino acid [aa] phenylalanine which is converted to tyrosine by the phenylalanine hydroxylase [PAH]. We show that after allo-transplantation in the marine sponge Geodiacydonium PAH is upregulated in the grafts. Enzyme determination studies revealed that PAH activity increases by three-fold two d after transplantation and reaches its maximum after 3 d (by 3.7-fold). This finding was supported by de…

chemistry.chemical_classificationTyrosine hydroxylasePhenylalanine hydroxylaseImmunologyPhenylalanineBiologyAmino acidTransplantationchemistry.chemical_compoundEnzymechemistryBiochemistrybiology.proteinAromatic amino acidsTyrosineDevelopmental BiologyDevelopmental & Comparative Immunology
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Initiation of an Aquaculture of Sponges for the Sustainable Production of Bioactive Metabolites in Open Systems: Example, Geodia cydonium.

1999

Among Metazoa, sponges (phylum Porifera) are the richest source for different bioactive compounds. The availability of the raw material is, however, restricted. To obtain enough of the bioactive compounds for application in human therapy, sponges have to be cultured in in vitro systems. One technique for the establishment of a long-term cell culture from sponges has recently been elaborated. Here, we present a procedure to cultivate tissue samples from sponges in an open system. The species Geodia cydonium, which produces bioactive compounds, has been selected. Tissue samples of approximately 10 g were attached to the bottoms of cultivation trays. After 2 to 3 days, the tissue samples forme…

geodia cydonium; suberites domuncula; sponges; porifera; aquaculture; Cd63; bioactivebiologyEcologyMusselbiology.organism_classificationApplied Microbiology and BiotechnologyIn vitroSuberites domunculaSpongeCell cultureComplementary DNAPotencyFood scienceCytotoxicityMarine biotechnology (New York, N.Y.)
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DNA damage and apoptosis in the mussel Mytilus galloprovincialis

2002

The effects of known genotoxic substances (4-nitroquinoline-N-oxide, benzo[a]pyrene, teniposide, etoposide, cycloheximide, tributyltin) on human cells (FLC, HL-60) and on mussels were investigated. The correlations between formation of DNA strand breaks and DNA fragmentation characteristic for the process of apoptosis were estimated. Strand breaks induced by 4-nitroquinoline-N-oxide and benzo[a]pyrene did not correlate with DNA fragmentation detected in the process of apoptosis. Induction of internucleosomal DNA fragmentation in HL-60 cells was initiated by teniposide, etoposide and tributyltin, while in the gills of mussels this was detected only with tributyltin. Levels of DNA strand brea…

Gillsanimal structuresDNA damageCell Culture TechniquesIndustrial WasteApoptosisAquatic ScienceOceanographymedicine.disease_causechemistry.chemical_compoundmedicineAnimalsHumansbiologyEcologyGeneral Medicinebiology.organism_classificationPollutionMolecular biologyMytilusBivalviachemistryBenzo(a)pyreneApoptosisTributyltinDNA fragmentationWater Pollutants ChemicalDNAGenotoxicityDNA DamageMarine Environmental Research
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Diagnosis of sublethal stress in the marine sponge Geodia cydonium: application of the 70 kDa heat-shock protein and a novel biomarker, the Rab GDP d…

1997

Abstract Sponges (Porifera) are among the major phyla inhabiting the marine hard-substrate benthos, both in respect to the number of species and their biomass. Hence reliable biomarkers need to be developed to monitor the environmental load in those animals. Recently, the cDNA for the heat shock protein HSP70 has been isolated from the sponge Geodia cydonium and found to be a reliable indicator for temperature stress. In the present study, we have isolated the Rab GDP-dissociation inhibitor (GDI), which has previously been shown to be a key element in the intracellular traffic system. The 1521 bp long cDNA, encoding sponge GDI, has been isolated and analyzed. The deduced aa sequence ( M r =…

Geodia cydonium; heat shock protein; cold shock; GDP-dissociation inhibitor; hsp70; marine sponge; biomarkers; sublethal stressbiologyHealth Toxicology and MutagenesisAquatic Sciencebiology.organism_classificationYeastHsp70SpongeBiochemistryTranscription (biology)Complementary DNAHeat shock proteinBotanyRabNorthern blotAquatic Toxicology
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Identification and Expression of the SOS Response, aidB-Like, Gene in the Marine Sponge Geodia cydonium: Implication for the Phylogenetic Relationshi…

1998

Sponges (Porifera) are the phylogenetically oldest metazoan organisms. From one member of the siliceous sponges, Geodia cydonium, the cDNA encoding a putative SOS protein, the AidB-like protein of the Ada system from bacteria, was isolated and characterized. The cDNA, GCaidB, comprises an open reading frame of 446 amino acid (aa) residues encoding a polypeptide with a calculated Mr of 49,335. This molecule shows high similarity to the bacterial AidB proteins from Mycobacterium tuberculosis and Escherichia coli and somewhat lower similarities to acyl-CoA dehydrogenases (ADHs) and acyl-CoA oxidases (AOXs). Northern blot analysis confirmed the presence of the complete transcript. The deduced s…

DNA ComplementarySequence analysisMolecular Sequence DataSequence alignmentBiologymedicine.disease_causeAcyl-CoA DehydrogenaseEvolution MolecularBacterial ProteinsPhylogeneticsComplementary DNAGeneticsmedicineAnimalsAmino Acid SequenceSOS Response GeneticsMolecular BiologyGeneEscherichia coliPeptide sequencePhylogenyEcology Evolution Behavior and SystematicsGeneticsBase SequenceEscherichia coli ProteinsAcyl-CoA Dehydrogenase Long-ChainSequence Analysis DNABlotting NorthernInvertebratesPoriferaOpen reading frameBiochemistryOxidoreductasesSequence AlignmentJournal of Molecular Evolution
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Evidence for a symbiosis between bacteria of the genus Rhodobacter and the marine sponge Halichondria panicea  : harbor also for putatively toxic bac…

1998

Halichondria panicea (Pallas) is a marine sponge, abundantly occurring in the Adriatic sea, North sea and Baltic sea. It was the aim of the present study to investigate if this sponge species harbors bacteria. Cross sections through H. panicea were taken and inspected by electron microscopy. The micrographs showed that this sponge species is colonized by bacteria in its mesohyl compartment. To identify the bacteria, polymerase chain reaction (PCR) analysis of the 16S rRNA gene segment, typical for bacteria, was performed. DNA was isolated from sponge material that had been collected near Rovinj (Adriatic Sea), Helgoland (North Sea), and Kiel (Baltic Sea) and was amplified with bacterial pri…

RhodobacterEcologybiologyZoologyAquatic Sciencebiology.organism_classification16S ribosomal RNAHalichondria paniceaMicrobiologySpongeSymbiosissponges; Halochondria; bacteria; Rhodobacter; symbiosis; toxicityMesohylProteobacteriaEcology Evolution Behavior and SystematicsBacteriaMarine Biology
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Potential multidrug resistance genePOHL: An ecologically relevant indicator in marine sponges

2001

Sponges are sessile filter feeders found in all aquatic habitats from the tropics to the arctic. Against potential environmental hazards, they are provided with efficient defense systems, e.g., protecting chaperones and/or the P-170/multidrug resistance pump system. Here we report on a further multidrug resistance pathway that is related to the pad one homologue (POH1) mechanism recently identified in humans. It is suggested that proteolysis is involved in the inactivation of xenobiotics by the POH1 system. Two cDNAs were cloned, one from the demosponge Geodia cydoniumand a second from the hexactinellid sponge Aphrocallistes vastus. The cDNA from G. cydonium, termed GCPOHL, encodes a deduce…

Health Toxicology and MutagenesisSaccharomyces cerevisiaeBiologybiology.organism_classificationMultiple drug resistanceSpongeBiochemistryComplementary DNABotanyGene expressionEnvironmental ChemistryChemosensitizing agentGeodiaGeneEnvironmental Toxicology and Chemistry
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Evaluation of the SOS/umu-test post-treatment assay for the detection of genotoxic activities of pure compounds and complex environmental mixtures.

2000

This study presents an evaluation of the SOS/umu-test after introducing an additional dilution and incubation in the post-treatment assay. This treatment reduces the influence of coloured test compounds that otherwise affect the colorimetric determination of the beta-galactosidase activity and the bacterial growth measurement during the testing of complex environmental samples. The post-treatment assay significantly increased the beta-galactosidase activity and consequently the enzyme induction ratios at higher doses of model genotoxins 4-nitroquinoline-N-oxide, N-methyl-N'-nitro-N-nitrosoguanidine, 2-aminoanthracene, benzo(a)pyrene with low or no effect on the sensitivity of the test itsel…

Salmonella typhimuriumMethylnitronitrosoguanidineHealth Toxicology and MutagenesisSegmented filamentous bacteriaRecombinant Fusion ProteinsSOS/umu-test; post-treatment assay; S.typhimurium; SOS response; genotoxicity assay; filamentous bacteria; environmental pollutionEnvironmental pollutionDNA-Directed DNA PolymeraseBacterial growthBiologyMicrobiologyAmes testBacterial ProteinsGeneticsBenzo(a)pyreneFood scienceSOS responseSOS Response GeneticsIncubationAnthracenesDose-Response Relationship DrugMutagenicity TestsEscherichia coli Proteinsbiology.organism_classificationbeta-Galactosidase4-Nitroquinoline-1-oxideSOS chromotestEnvironmental PollutantsBacteriaCell DivisionMutagensMutation research
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Expression of the human XPB/ERCC-3 excision repair gene-homolog in the sponge Geodia cydonium after exposure to ultraviolet radiation.

1998

Abstract The marine demosponge Geodia cydonium encodes a gene, termed GCXPB , which displays 62% identity to the human XPB/ERCC-3 gene that specifically corrects the repair defect in xeroderma pigmentosum and in Cockayne's syndrome. The cDNA was isolated and characterized the deduced aa sequence, XPB_GEOCY, with the calculated size of 91,541 Da comprises the characteristic domains found in the related helicases. Phylogenetic tree analysis revealed that the sponge sequence is grouped to the metazoan related XPB/ERCC-3 polypeptides. Northern Blot analyses have been performed with sponge samples collected at different depths, thus exposed to different intensities of UV sunlight in the field. T…

Xeroderma pigmentosumDNA ComplementaryDNA RepairUltraviolet RaysMolecular Sequence DataBiologyToxicologyRadiation ToleranceEvolution MolecularComplementary DNAGene expressionGeneticsmedicineAnimalsNorthern blotAmino Acid SequenceCloning MolecularMolecular BiologyGenePhylogenyGeneticsinduced dna-damage; xeroderma-pigmentosum; cockaynes-syndrome; alignment; biomarker; protein; stressSequence Homology Amino AcidNucleic acid sequenceDNA HelicasesHelicaseSequence Analysis DNAmedicine.diseaseMolecular biologyPoriferaUp-RegulationDNA-Binding Proteinsbiology.proteinNucleotide excision repairDNA DamageMutation research
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Induction of apoptosis in the blue mussel Mytilus galloprovincialis by tri-n-butyltin chloride

2001

Induction of apoptosis by tri-n-butyltin (TBT) in gill tissue of the mussel Mytilus galloprovincialis was investigated. The terminal dUTP nick-end labeling technique (TUNEL) was used to detect cells displaying DNA fragmentation within gill structures. Genomic DNA fragmentation was detected as characteristically ladder-like pattern of DNA fragments induced by single injection of different doses of TBT (1-5 microg/g) below the mantle, directly into the pallial fluid, after 24 h of incubation. DNA degradation of higher order DNA structure, as well as reduced G(0)/G(1) cell cycle region (the sub-G(1) region) was detectable after 1.5 h of TBT incubation. Presence of apoptotic cells in mussels' g…

GillsGillanimal structuresDNA damageHealth Toxicology and MutagenesisApoptosisDNA FragmentationAquatic ScienceBiologychemistry.chemical_compoundIn Situ Nick-End LabelingAnimalsTUNEL assayCell CyclefungiMusselAnatomyFlow Cytometrybiology.organism_classificationImmunohistochemistryMolecular biologyMytilusBivalviaElectrophoresis Gel Pulsed-FieldchemistryTributyltinDNA damage; apoptosis; tributyltin; musselDNA fragmentationTrialkyltin CompoundsWater Pollutants ChemicalBlue musselAquatic Toxicology
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Specific detection of cyclobutane pyrimidine dimers in phytoplankton DNA by a non-radioactive assay based on T4-endonuclease V digestion.

2001

The effect of artificial and natural UV irradiation on DNA in marine phytoplankton Isochrysis galbana monoculture was investigated. The presence of cyclobutane pyrimidine dimers (CPDs) in unlabelled I. galbana DNA was detected by a non-radiometric alkaline filter elution assay after T4-endonuclease V digestion. The quantity of CPDs was estimated by alkaline agarose gel electrophoresis. Precise determination of the amount of DNA in the presence of I. galbana pigments was achieved by oxazole yellow homodimer (YOYO) dye. T4-endonuclease V-sensitive sites frequency (ESS/kb), measured after exposure to 2-40 kJ m(-2) of artificial UV light, increased in a dose-dependent manner. Twelve hours after…

Environmental EngineeringDNA RepairDNA damageDNA repairUltraviolet RaysPyrimidine dimerIsochrysis galbanachemistry.chemical_compoundPigmentDeoxyribonuclease (Pyrimidine Dimer)Viral ProteinsEnvironmental ChemistryWaste Management and DisposalEndodeoxyribonucleasesbiologyAlkaline filter elution; crude oil; DNA damage; phytoplankton; UV; sunlightbiology.organism_classificationPollutionPetroleumBiochemistrychemistryCell culturePyrimidine Dimersvisual_artAgarose gel electrophoresisPhytoplanktonvisual_art.visual_art_mediumSunlightBiological AssayDNADNA DamageThe Science of the total environment
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Induction of DNA damage and expression of heat shock protein HSP70 by polychlorinated biphenyls in the marine sponge Suberites domuncula Olivi

1999

The effects of different polychlorinated biphenyls (PCBs) including toxic coplanar non-ortho (PCB77) and non-planar mono-ortho (PCB118) and di-ortho (PCB153) congeners on the extent of DNA damage as well as on the expression of heat shock protein 70 (HSP70) were investigated in the marine sponge Suberites domuncula Olivi (Porifera; Demospongiae). A time-dependent increase in the number of DNA single-strand breaks, expressed as strand scission factor (SSF), was found after injection of a single dose of 25 mu g of PCB 118 or PCB 153 per gram wet mass of S. domuncula, using Fast Micromethod assay, which is based on the unwinding of DNA under alkaline conditions. The number of strand breaks ind…

biologyDNA damageAquatic Sciencebiology.organism_classificationMolecular biologyMicrobiologyHsp70Suberites domunculaSpongechemistry.chemical_compoundDNA damage; heat shock protein hsp70; polychlorinated biphenyls; environmental stresschemistryHeat shock proteinGene expressionEcology Evolution Behavior and SystematicsDNASuberites
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Lack of correlation between apoptosis and DNA single-strand breaks in X-irradiated human peripheral blood mononuclear cells in the course of ageing

1998

The dependence on age of both the basal and the X-radiation-induced levels of apoptosis was examined in human peripheral blood mononuclear cells (PBMC). In the same samples, the base value and the extent of induced DNA single-strand breaks were determined, using a sensitive and fast microplate assay. PBMC were isolated from blood of donors of various age groups (20-30, 40-60 and > 70 years of age) and X-irradiated ex vivo using a 6 MV linear accelerator to give a total exposure of 4 Gy. The mean basal levels of apoptosis in PBMC from donors in the 40-60 year age group and the > 70 year age group were found to be only slightly higher (by 20-10%) compared to that of the 20-30 year age group, …

SenescenceAgingProgrammed cell deathDNA damageX-RaysDNA Single-StrandedApoptosisBiologyPeripheral blood mononuclear cellAndrologyBlood cellmedicine.anatomical_structureApoptosisAgeingImmunologyLeukocytes MononuclearmedicineHumansRadiation-induced apoptosis; T-cells; Intrinsic radiosensitivity; Ionizing-radiation; Cervical-carcinoma; Human-lymphocytes; Immune-systemEx vivoDevelopmental BiologyMechanisms of Ageing and Development
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Immediate early response of the marine sponge Suberites domuncula to heat stress: Reduction of trehalose and glutathione concentrations and glutathio…

1997

The marine sponge Suberites domuncula was used to identify early markers for thermal stress. Cubes from sponges have been kept for 30 min at 31°C (10 °C higher than the ambient temperature). After this treatment the sponge cubes were kept again at 21°C. To demonstrate that the animals reacted to the elevated temperature, the expression of heat shock protein (HSP) was determined. Using an antibody raised against HSP70, it was found by Western blotting that the animals specifically express a 45 kDa polypeptide after heat treatment. It was shown that even after 10 min of heat treatment the steady-state concentration of trehalose drops by 40% from a base level of 13 nmol/mg protein. The activit…

chemistry.chemical_classificationbiologyGlutathioneAquatic Sciencebiology.organism_classificationTrehaloseEnzyme assayHsp70Suberites domunculachemistry.chemical_compoundEnzymechemistryBiochemistryHeat shock proteinbiology.proteinTrehalasesponge; Suberites domuncula; heat shock; trehalose; glutathione; S-transferaseEcology Evolution Behavior and Systematics
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Bio-vaterite formation by glycoproteins from freshwater pearls

2010

Abstract A 48 kDa acidic and putative calcium-binding glycoprotein was isolated from pearls of the freshwater mussel Hyriopsis cumingii . This protein was compared with a related 46 kDa polypeptide, obtained from the nacreous shell of the same species. Separation by two-dimensional gel electrophoresis revealed that the difference in molecular weight is due to the higher extent of glycosylation of the 48 kDa protein existing in pearls. Evidence is presented that the sugar moieties of the protein contribute to crystal growth, starting with the nucleation step. In in vitro precipitation experiments, the 48 kDa glycoprotein of pearls directed the formation of round-shaped vaterite crystals whil…

UnionidaeGlycosylationGlycosylationGeneral Physics and AstronomyFresh WaterBiologyCalcium Carbonatechemistry.chemical_compoundStructural BiologyVateriteAnimalsElectrophoresis Gel Two-DimensionalGeneral Materials ScienceCarbonic AnhydrasesGlycoproteinschemistry.chemical_classificationCalciteGel electrophoresisbiomineralization ; freshwater pearls ; calcium carbonate precipitation ; vaterite ; carbonic anhydraseCell BiologyMusselMolecular WeightCalcium carbonatechemistryBiochemistryGlycoproteinBiomineralization
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Histocompatibility reaction in tissue and cells of the marine sponge Suberites domuncula in vitro and in vivo: central role of the allograft inflamma…

2001

Sponges (Porifera) are the phylogenetically oldest still extant metazoan phylum. Recently elements of their immune system have been cloned and analyzed, primarily from the demosponges Suberites domuncula and Geodia cydonium. By differential display, two genes were identified in S. domuncula, whose translation products are involved in graft rejection/fusion: the allograft inflammatory factor (AIF-1) and the Tcf-like transcription factor (TCF). Since the AIF-1 and TCF genes are upregulated in vivo after tissue transplantation, especially in allografts, we investigated whether this reaction can be monitored in vitro. Therefore, the autogeneic and the allogeneic mixed sponge cell reaction (MSCR…

Lymphoid Enhancer-Binding Factor 1ImmunologyMolecular Sequence DataTacrolimusdemosponges; Suberites domuncula; Geodia cydonium; AIF-1(allograft inflamatory factor 1); TCFMicrobiologyImmune systemGeneticsAnimalsAmino Acid SequenceCloning MoleculareducationTranscription factorPhylogenyeducation.field_of_studyDifferential displaybiologyCalcium-Binding Proteinsbiology.organism_classificationIn vitroRecombinant ProteinsCell biologyHistocompatibilityPoriferaSuberites domunculaDNA-Binding ProteinsSpongeGene Expression RegulationHMG-Box DomainsHistocompatibilityAllograft inflammatory factor 1Transcription Factors
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Molecular response to TBT stress in marine sponge Suberites domuncula: proteolytical cleavage and phosphorylation of KRS_SD protein kinase

2003

Abstract Marine sponges as sessile filter feeders are inevitably under a constant influence of changes in their environment. Mediation of extracellular signals and regulation of cellular response to environmental stress is a key function of cellular protein kinases. Expression, proteolytical cleavage and phosphorylation of stress-responsive KRS_SD protein kinase, in control and tributyl-tin (TBT) treated sponges were investigated. In control sponge, two KRS_SD proteins were expressed: KRS_SD1 (54 kDa) corresponding to KRS_SD calculated molecular weight, and KRS_SD2 (50 kDa). Exposure of sponges to TBT resulted in alteration of KRS_SD1 and KRS_SD2 expression levels and their phosphorylation …

chemistry.chemical_classificationbiologymedicine.diagnostic_testKinaseProteolysisKRS_SD; marine sponge; protein kinase; stress; Tributyl-tinAquatic Sciencebiology.organism_classificationCleavage (embryo)Molecular biologySuberites domunculaEnzymeBiochemistrychemistrymedicineExtracellularPhosphorylationProtein kinase AEcology Evolution Behavior and SystematicsJournal of Experimental Marine Biology and Ecology
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Expression of one sponge Iroquois homeobox gene in primmorphs from Suberites domuncula during canal formation

2003

SUMMARY Sponges (Porifera) represent the evolutionary oldest multicellular animals. They are provided with the basic molecules involved in cell–cell and cell–matrix interactions. We report here the isolation and characterization of a complementary DNA from the sponge Suberites domuncula coding for the sponge homeobox gene, SUBDOIRX-a. The deduced polypeptide with a predicted Mr of 44,375 possesses the highly conserved Iroquois-homeodomain. We applied in situ hybridization to localize Iroquois in the sponge. The expression of this gene is highest in cells adjacent to the canals of the sponge in the medulla region. To study the expression of Iroquois during development, the in vitro primmorph…

Molecular Sequence DataIn situ hybridizationFerric CompoundsComplementary DNAAnimalsCluster AnalysisGeneIn Situ HybridizationPhylogenyEcology Evolution Behavior and SystematicsDNA PrimersBase SequencebiologyMulticellular animalsGene Expression ProfilingGenes HomeoboxFresh-water sponge. Geodia-cydonium. Marine sponges. Ephydatia-muelleri. Adhesion receptors. Family. Origin. Cells. Identification. Evolution.Sequence Analysis DNAAnatomyBlotting Northernbiology.organism_classificationIn vitroPoriferaCell biologySuberites domunculaSpongeHomeoboxDevelopmental BiologyEvolution and Development
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Silicateins, silicatein interactors and cellular interplay in sponge skeletogenesis: formation of glass fiber-like spicules

2012

Biomineralization processes are characterized by controlled deposition of inorganic polymers/minerals mediated by functional groups linked to organic templates. One metazoan taxon, the siliceous sponges, has utilized these principles and even gained the ability to form these polymers/minerals by an enzymatic mechanism using silicateins. Silicateins are the dominant protein species present in the axial canal of the skeletal elements of the siliceous sponges, the spicules, where they form the axial filament. Silicateins also represent a major part of the organic components of the silica lamellae, which are cylindrically arranged around the axial canal. With the demosponge Suberites domuncula …

0303 health sciencesSpiculebiology02 engineering and technologyCell BiologyAnatomyFlagellum021001 nanoscience & nanotechnologybiology.organism_classificationBiochemistrySuberites domuncula03 medical and health sciencesSpongeSponge spiculeDemospongeBiophysics0210 nano-technologyMolecular Biology030304 developmental biologySclerocyteBiomineralizationFEBS Journal
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Inhibitory effects of extracts from the marine alga Caulerpa taxifolia and of toxin from Caulerpa racemosa on multixenobiotic resistance in the marin…

1998

The invasive growth of the introduced green alga Caulerpa taxifolia, already affecting the richness and diversity of the littoral ecosystems, has become a major ecological problem in the Mediterranean Sea. Previously, we demonstrated that the water pollutant tributyltin induces apoptosis in tissue of the marine sponge Geodia cydonium at concentrations of 3 μM and higher. Here we show that exposure of G. cydonium to low (non-toxic) concentrations of Caulerpa extract or purified caulerpin (10 μg/ml) together with low doses of tributyltin (1 μM; non-toxic), results in a strong apoptotic effect. Evidence is presented that the enhancement of toxicity of tributyltin by Caulerpa extract is at leas…

PharmacologyGillbiologyHealth Toxicology and MutagenesisCaulerpa taxifoliaGeneral MedicineMusselToxicologybiology.organism_classificationAlgal bloomSpongechemistry.chemical_compoundCaulerpa racemosachemistryBotanyTributyltinCaulerpaEnvironmental Toxicology and Pharmacology
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Purification and partial characterization of a lectin protein complex, the clathrilectin, from the calcareous sponge Clathrina clathrus

2016

Carbohydrate-binding proteins were purified from the marine calcareous sponge Clathrina clathrus via affinity chromatography on lactose and N-acetyl glucosamine- agarose resins. Proteomic analysis of acrylamide gel separated protein subunits obtained in reducing conditions pointed out several candidates for lectins. Based on amino- acid sequence similarity, two peptides displayed homology with the jack bean lectin Concanavalin A, 
 including a conserved domain shared by proteins in the L-type lectin superfamily. An N-acetyl glucosamine - binding protein complex, named clathrilectin, was further purified via gel filtration chromatography, bioguided with a diagnostic rabbit erythrocyte haemag…

Proteomics0301 basic medicinePhysiologySyconBiochemistry03 medical and health sciencesAffinity chromatographyLectinsAnimalsTrypsinMolecular Biology030102 biochemistry & molecular biologybiologyCalcareous spongeHemagglutinationLectinClathrina clathrusbiology.organism_classificationMolecular biologyCell aggregationPoriferaPorifera ; Clathrina clathrus ; lectin ; N-acetyl-glucosamine ; cell aggregation ; proteomicsSponge030104 developmental biologyBiochemistryConcanavalin AProteolysisbiology.proteinCarbohydrate MetabolismFemaleRabbitsComparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology
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Increased Expression of Integrin and Receptor Tyrosine Kinase Genes During Autograft Fusion in the SpongeGeodia cydonium

1999

Recently cDNAs coding for cell surface molecules have been isolated from sponges. The molecules for alpha-integrin, galectin, and receptor tyrosine kinase (RTK), obtained from the marine sponge, Geodia cydonium, have been described earlier. In the present study also the cDNA for one putative beta-integrin has been identified from G. cydonium. The deduced aa sequence comprises the characteristic signatures, found in other metazoan beta-integrin molecules; the estimated size is 95,215 Da. To obtain first insights into the molecular events which proceed during autograft fusion, the expressions of these genes were determined on transcriptional and translational level. The cDNAs as well as antib…

DNA ComplementaryMolecular Sequence DataIntegrinGene ExpressionReceptor tyrosine kinaselaw.inventionlawTranscription (biology)Complementary DNAAnimalsHumansAmino Acid SequenceNorthern blotCloning MolecularGenePhylogenyGalectinBase SequenceSequence Homology Amino AcidStaining and LabelingbiologyIntegrin beta1Receptor Protein-Tyrosine KinasesGeneral MedicineMolecular biologyPoriferabiology.proteinRecombinant DNACell Adhesion and Communication
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Combinatory effects of temperature stress and nonionic organic pollutants on stress protein (hsp70) gene expression in the freshwater spongeEphydatia…

1995

This is the first documentation of a heat shock protein (hsp) response in sponges. Subjecting the freshwater sponge Ephydatia fluviatilis to temperature stress (18 to 33 C; 2 h) resulted in an increased expression (>10 times) of the M{sub r}70,000 (hsp70). The induction of hsp70 could be demonstrated on the level of gene expression and by quantification of the hsp70 protein. Temperature stress also resulted in a 25% reduction of sponge cell proliferation. A mixture of nonionic organic compound was extracted from water from the polluted Schwarzbach River (S. Hesse, Germany) by adsorption onto XAD-7 resin. Concentrations of this Schwarzbach River water extract at two and four items ambient le…

PollutantbiologyCell growthEcologyHealth Toxicology and Mutagenesisbiology.organism_classificationHsp70chemistry.chemical_compoundSpongechemistryHeat shock proteinGene expressionEnvironmental ChemistryFood scienceWater pollutionXenobioticEnvironmental Toxicology and Chemistry
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Retinoid X receptor and retinoic acid response in the marine sponge Suberites domuncula

2003

SUMMARY To date no nuclear receptors have been identified or cloned from the phylogenetically oldest metazoan phylum, the Porifera (sponges). We show that retinoic acid causes tissue regression in intact individuals of the demosponge Suberites domuncula and in primmorphs, special three-dimensional cell aggregates. Primmorphs were cultivated on a galectin/poly-L-lysine matrix in order to induce canal formation. In the presence of 1 or 50 μmol l–1 retinoic acid these canals undergo regression, a process that is reversible. We also cloned the cDNA from S. domunculaencoding the retinoid X receptor (RXR), which displays the two motifs of nuclear hormone receptors, the ligand-binding and the DNA-…

DNA ComplementaryRetinoid X receptor; Suberites domuncula; marine spongesCroatiaReceptors Retinoic AcidPhysiologyMolecular Sequence DataRetinoic acidGene ExpressionApoptosisEnzyme-Linked Immunosorbent AssayTretinoinRetinoic acid receptor betaAquatic ScienceRetinoic acid-inducible orphan G protein-coupled receptorchemistry.chemical_compoundAnimalsCluster AnalysisAmino Acid SequenceMolecular BiologyPhylogenyEcology Evolution Behavior and SystematicsbiologySequence Analysis DNARetinoic acid receptor gammaBlotting Northernbiology.organism_classificationRetinoid X receptor gammaPoriferaCell biologySuberites domunculaRetinoic acid receptorRetinoid X ReceptorschemistryBiochemistryRetinoic acid receptor alphaInsect ScienceAnimal Science and ZoologySequence AlignmentTranscription FactorsJournal of Experimental Biology
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Arginine kinase in the demosponge Suberites domuncula:regulation of its expression and catalytic activity by silicic acid

2005

SUMMARY In Demospongiae (phylum Porifera) the formation of the siliceous skeleton,composed of spicules, is an energetically expensive reaction. The present study demonstrates that primmorphs from the demosponge Suberites domuncula express the gene for arginine kinase after exposure to exogenous silicic acid. The deduced sponge arginine kinase sequence displays the two characteristic domains of the ATP:guanido phosphotransferases; it can be grouped to the `usual' mono-domain 40 kDa guanidino kinases (arginine kinases). Phylogenetic studies indicate that the metazoan guanidino kinases evolved from this ancestral sponge enzyme; among them are also the `unusual'two-domain 80 kDa guanidino kinas…

DNA ComplementaryArgininePhysiologyMolecular Sequence DataSilicic AcidAquatic ScienceCatalysisGene Expression Regulation EnzymologicEvolution Molecularchemistry.chemical_compoundDemospongeMicroscopy Electron TransmissionAnimalsCluster AnalysisAmino Acid SequenceNorthern blotSilicic acidMolecular BiologyIn Situ HybridizationPhylogenyEcology Evolution Behavior and Systematicschemistry.chemical_classificationBase SequencebiologyKinaseArginine KinaseSequence Analysis DNAArginine kinaseBlotting Northernbiology.organism_classificationPoriferaSuberites domunculaEnzymechemistryBiochemistryInsect Sciencebiology.proteinAnimal Science and ZoologySequence AlignmentJournal of Experimental Biology
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Purification and characterization of two exopolyphosphatases from the marine sponge Tethya lyncurium

1995

Abstract Two exopolyphosphatases (exopolyphosphatase I and II; EC 3.6.1.11) which release orthophosphate from inorganic polyphosphates have been detected and purified for the first time from a marine sponge, Tethya lyncurium . Exopolyphosphatase I has a molecular mass of 45 kDa, a pH optimum of 5.0 and does not require divalent cations for activity, while exopolyphosphatase II has a molecular mass of 70 kDa, a pH optimum of 7.5 and displays optimal activity in the presence of Mg 2+ ions. Final purification of the enzymes could be achieved by affinity chromatography on polyphosphate-modified zirconia. The mode of action of both enzymes was found to be processive. Orthophosphate is the sole p…

Cations DivalentBiophysicsAdenylate kinaseBiochemistryPyrophosphateDivalentchemistry.chemical_compoundPolyphosphatesProtein purificationAnimalsMolecular BiologyExopolyphosphatasechemistry.chemical_classificationChromatographyMolecular massPolyphosphateTemperatureHydrogen-Ion ConcentrationAcid Anhydride HydrolasesPoriferaMolecular WeightKineticsEnzymechemistryBiochemistryAdenylyl Cyclase InhibitorsBiochimica et Biophysica Acta (BBA) - General Subjects
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Porifera Lectins: diversity, physiological roles and biotechnological potential

2015

An overview on the diversity of 39 lectins from the phylum Porifera is presented, including 38 lectins, which were identified from the class of demosponges, and one lectin from the class of hexactinellida. Their purification from crude extracts was mainly performed by using affinity chromatography and gel filtration techniques. Other protocols were also developed in order to collect and study sponge lectins, including screening of sponge genomes and expression in heterologous bacterial systems. The characterization of the lectins was performed by Edman degradation or mass spectrometry. Regarding their physiological roles, sponge lectins showed to be involved in morphogenesis and cell intera…

bioactivitiesAnti-Inflammatory AgentsPharmaceutical ScienceHeterologousReviewBiologyGenomeMicrobiologyBiological Factors03 medical and health sciencesAnti-Infective AgentsAffinity chromatographyLectinsDrug Discoveryporifera; lectin; physiological roles; bioactivitiesAnimalsHumansCytotoxicityPharmacology Toxicology and Pharmaceutics (miscellaneous)physiological roleslcsh:QH301-705.5030304 developmental biology0303 health sciencesEdman degradationCytotoxinsporifera030302 biochemistry & molecular biologyLectinGeologybiology.organism_classificationAntimicrobialSpongeBiochemistrylcsh:Biology (General)biology.proteinlectinBiotechnology
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Effect of hypoosmotic stress by low salinity acclimation of Mediterranean mussels Mytilus galloprovincialis on biological parameters used for polluti…

2008

In the present study, we investigated the progressive acclimation of the mussel Mytilus galloprovincialis to different reduced seawater (SW) salinities and its effect on several biochemical markers and biotests. Mussels were purchased from a local mariculture facility during summer (SW temperature 27 degrees C, salinity 37.5 psu) and winter (13 degrees C, 37 psu) seasons, and transferred to the laboratory for acclimation to reduced SW salinities (37, 28, 18.5 and 11 psu). At the beginning and at the end of acclimation processes tests of mussel survival in air were provided. After 14 days of acclimation the DNA integrity, p38-MAPK activation, metallothionein induction, oxygen consumption rat…

GillGillsSalinityanimal structuresHealth Toxicology and MutagenesisMuscle ProteinsAquatic ScienceAcclimatizationp38 Mitogen-Activated Protein KinasesCondition indexAnimal scienceOxygen ConsumptionOsmotic PressureAnimalsMaricultureFluorometrySeawaterPhosphorylationMytilusPrincipal Component AnalysisbiologyEcologyfungiMusselMytilus galloprovincialis; biomarkers; salinity; temperature; environmental condition variations; hypoosmotic stressbiology.organism_classificationBivalviaMytilusSalinityElectrophoresis Polyacrylamide GelMetallothioneinSeasonsDNA DamageEnvironmental Monitoring
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Origin of the integrin-mediated signal transduction. Functional studies with cell cultures from the sponge Suberites domuncula

1999

Sponges (phylum Porifera) represent the phylogenetically oldest metazoan animals. Recently, from the marine sponge Geodia cydonium a first cDNA encoding a putative integrin receptor molecule was isolated. In the present study basic functional experiments have been conducted to test the hypothesis that in sponges integrin polypeptides also function as adhesion molecules and as outside-in signaling molecules. The sponge Suberites domuncula has been used for the experiments because from this sponge only has a cell culture been established. Here we report that aggregation factor (AF)-mediated cell-cell adhesion is blocked by the RGDS peptide which is known to interact with beta integrin. Both R…

DNA ReplicationIntegrinsMolecular Sequence DataIntegrinBiologyBiochemistryCD49cEvolution MolecularCalmodulinCell AdhesionAnimalsAmino Acid SequenceRNA MessengerCloning MolecularCell adhesionCells CulturedCell AggregationCell adhesion moleculeSequence Analysis DNAbiology.organism_classificationCell aggregationPoriferaCell biologysuberites domuncula; integrin; calcium; ras; calmodulin; signal transduction; evolution; rgd(s)Suberites domunculaGene Expression RegulationIntegrin alpha Mras Proteinsbiology.proteinCalciumIntegrin beta 6Cell Adhesion MoleculesOligopeptidesSignal TransductionEuropean Journal of Biochemistry
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Purification and characterization of a pore-forming protein from the marine sponge Tethya lyncurium

1992

A pore-forming protein was detected and purified for the first time from a marine sponge (Tethya lyncurium). The purified protein has a polypeptide molecular mass of 21 kDa and a pI of 6.4. Tethya pore-forming protein (also called Tethya hemolysin) rapidly lysed erythrocytes from a variety of organisms. After binding to target membranes, the hemolysin resisted elution with EDTA, salt or solutions of low ionic strength and hence resembled an integral membrane protein. Erythrocytes could be protected from hemolysis induced by Tethya hemolysin by addition of 30 mM dextran 4 (4-6 kDa; equivalent hydrodynamic diffusion radius, 1.75-2.3 nm) to the extracellular medium, but not by addition of unch…

Cell Membrane PermeabilityLysisChemical PhenomenaCarbohydratesHemolysisBiochemistryPore forming proteinHemolysin ProteinsAdenosine TriphosphateOsmotic PressureAnimalsHumansColloidsIntegral membrane proteinSheepbiologyMolecular massChemistry PhysicalErythrocyte MembraneDextransHemolysinMembrane transportbiology.organism_classificationPoriferaMolecular WeightMicroscopy ElectronMembraneBiochemistryChromatography GelPotassiumTethyaRabbits
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Induction of DNA strand breaks and expression of HSP70 and GRP78 homolog by cadmium in the marine sponge Suberites domuncula

1998

The marine sponge Suberites domuncula was used as a bioindicator to study the effects of cadmium on the occurrence of DNA strand breakage and on the induction of the expression of the stress biomarkers, heat shock protein 70 (HSP70) and glucose-regulated protein 78 (GRP78) homolog. The cDNA encoding GRP78 homolog from S. domuncula was isolated and characterized. The GRP78 cDNA has a length of 2.1 kb and displays characteristic features of the HSP70 family ; it encodes an aa sequence of M-r 72, 000. Exposure of S. domuncula to 1 mg/L of cadmium chloride for 24 h caused a strong(16.6-fold) increase in cadmium content to 7.7 mu g/g wet weight of sponge tissue ; after an incubation period of 6 …

DNA damageHealth Toxicology and MutagenesisMolecular Sequence Datachemistry.chemical_elementCadmium chlorideToxicologyIncubation periodchemistry.chemical_compoundCadmium ChlorideGlucose-regulated protein. Heat-shock proteins. Geodia-cydonium.Mediterranean SeaAnimalsHSP70 Heat-Shock ProteinsAmino Acid SequenceNorthern blotIncubationHeat-Shock ProteinsCadmiumGreeceSequence Homology Amino AcidbiologyEcologyDNAGeneral Medicinebiology.organism_classificationPollutionMolecular biologyPoriferaHsp70Suberites domunculaZincchemistryWater Pollutants ChemicalDNA DamageMutagens
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A Microplate Assay for DNA Damage Determination (Fast Micromethod)in Cell Suspensions and Solid Tissues

1999

Abstract A rapid and convenient procedure for DNA damage determination in cell suspensions and solid tissues on single microplates was developed. The procedure is based on the ability of commercially available fluorochromes to interact preferentially with dsDNA in the presence of ssDNA, RNA, and proteins at high pH (>12.0), thus allowing direct measurements of DNA denaturation without sample handling or stepwise DNA separations. The method includes a simple and rapid 40-min sample lysis in the presence of EDTA, SDS, and high urea concentration at pH 10, followed by time-dependent DNA denaturation at pH 12.4 after NaOH addition. The time course and the extent of DNA denaturation is followed …

ChromatographyLysisDNA damageBiophysicsRNACell Biologymedicine.disease_causeBiochemistryFluorescencechemistry.chemical_compoundchemistryUreamedicineMolecular BiologyDNAGenotoxicityHomogenization (biology)Analytical Biochemistry
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Correlation between the level of the potential biomarker, heat-shock protein, and the occurrence of DNA damage in the dab, Limanda limanda: a field s…

2000

In the present study, heat-shock protein of M-r 70 kDa (HSP70), a marker of cellular stress response, was validated as a potential biomarker under field conditions. The dab, Limanda limanda (female, size greater than or equal to 25 cm, spawning maturity stage 2) was used as the indicator organism. The data on HSP level were correlated with the occurrence of DNA damage, measured in the same specimens of L. limanda, to prove the usefulness of the method. The area under investigation was the North Sea. Four locations were selected: station N01, close to Heligoland, in the North Sea; station N04 at the Dogger Bank; station N06 at the Firth of Forth; and station G08 in the English Channel. Ten a…

DNA damageZoologyEnvironmental pollutionMarine BiologyFlounderAquatic ScienceBiologyOceanographymedicine.disease_causeHeat shock proteinGermanymedicineAnimalsLimandaHSP70 Heat-Shock ProteinsNorth seaEnvironmental factordab;Limanda limanda;biomarker;heat-shock protein;DNA damage;North seaGeneral Medicinebiology.organism_classificationPollutionEnglandLiverPotential biomarkersFemaleBioindicatorBiomarkersDNA DamageEnvironmental MonitoringMarine environmental research
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Prolidase in the Marine Sponge Suberites domuncula: Enzyme Activity, Molecular Cloning, and Phylogenetic Relationship

1999

: The enzyme prolidase hydrolyzes the peptide bond that involves the imino nitrogen of proline or hydroxyproline; hence, it catalyzes the final step in collagen degradation. From mammals it is known that this enzyme plays a major role in the recycling of proline for collagen synthesis and can be considered to be essential for the control of cell growth. The dominant organic exoskeleton in sponges, especially in Demospongiae, is collagen and the collagen-related spongin. Here we demonstrate that crude extracts of the demosponge Suberites domuncula contain prolidase or prolidase-like activity. The complementary DNA encoding the putative prolidase was cloned from a library of the same animal. …

Suberites domunculaSpongebiologySponginBiochemistryPEPDComplementary DNAAlternative splicingcollagen; proline recycling; cell growth; evolutionMolecular cloningbiology.organism_classificationApplied Microbiology and BiotechnologyGeneMarine Biotechnology
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Increased gene expression of a cytokine-related molecule and profilin after activation of Suberites domuncula cells with xenogeneic sponge molecule(s)

2000

Porifera (sponges) constitute the lowest metazoan phylum, Experiments examined whether sponges can recognize self/nonself molecules. Cells from the marine sponge Suberites domuncula were incubated with membranes from either S. domuncula or another marine sponge, Geodia cydonium, as well as with recombinant alpha-integrin from G. cydonium. The cells responded immediately with a rise of intracellular Ca2+ ([Ca-i(2+)]) if they were treated with membranes from G. cydonium but not after treatment by those from S. domuncula. This change of [Ca-i(2+)] was also recorded with G. cydonium alpha-integrin. In parallel, the expression of two genes was strongly upregulated; one codes for a cytokine-relat…

Integrinsmedicine.medical_treatmentMolecular Sequence DataGene ExpressionPolymerase Chain ReactionMicrobiologylaw.inventionProfilinsContractile ProteinsAntigenlawAntigens HeterophileGene expressionGeneticsmedicineAnimalsAmino Acid SequenceCloning MolecularMolecular Biologygeodia-cydonium; marine sponge; allogeneic recognition; immune recognition; adhesionMembranesbiologyMicrofilament ProteinsCell BiologyGeneral Medicinebiology.organism_classificationCell biologyPoriferaSuberites domunculaSpongeCytokineEchinodermProfilinbiology.proteinRecombinant DNACytokinesCalciumSequence Alignment
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Alterations inras-gene expression and intracellular distribution of protein kinase C in the spongeGeodia cydonium in response to marine pollution

1990

The siliceous spongeGeodia cydonium Jameson was used to study the influence of pollution in marine environments on selected parameters of the intracellular signal transduction pathway. The parameters chosen were: intracellular distribution of protein kinase C (PK-C),ras-gene expression and DNA polymerasealpha (DNA Polalpha) activity. Both PK-C andras-gene product (ras-protein) have previously been established to be key molecules in the intracellular signalling pathway in sponges; increased level ofras-protein mediates events following sponge cell-cell contact. Three unpolluted and three polluted sites in the off-shore seawater around Rovinj (Yugoslavia) were selected for the study in 1989. …

chemistry.chemical_classificationEcologybiologyCell growthAquatic Sciencebiology.organism_classificationTransplantationSpongeCytosolEnzymeBiochemistrychemistryGene expressionEcology Evolution Behavior and SystematicsProtein kinase CIntracellularMarine Biology
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A novel TiO2-assisted magnetic nanoparticle separator for treatment and inactivation of bacterial contaminants in aquatic systems

2014

Ferromagnetic nanoparticles (Fe-nanoparticles) have been functionalized with recombinant poly- Glu [glutamic acid]-tagged silicatein, a biomineral-synthesizing enzyme from siliceous sponges that forms the inorganic silica skeleton of those animals. The biocatalytic activity of silicatein was used to form a titania (TiO2) shell around the iron nanoparticle core, using the water-soluble non- natural substrate titanium bis(ammonium lactato)-dihydroxide (TiBALDH). Thereby the diameter of the nanoparticles increases from 7 nm to ≈22 nm. This procedure also allows the layer-by-layer fabrication of titania/silica- Fe-nanoparticles. SEM/EDX analysis confirmed the presence of the Ti and Si signals i…

aquatic system; bacterial contaminants; magnetic nano-particles; TiOAqueous solutionFabricationMaterials scienceFerromagnetic material propertiesGeneral Chemical EngineeringInorganic chemistrySubstrate (chemistry)chemistry.chemical_elementNanoparticleGeneral ChemistrychemistryPhotocatalysisSeparator (electricity)TitaniumRSC Adv.
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Apoptosis in marine sponges: a biomarker for environmental stress (cadmium and bacteria)

1998

The marine demosponge Suberites domuncula is abundantly present on muddy sand bottoms, both in the open sea and in harbors. In the present study it is shown that exposure of S. domuncula to cadmium (CdCl2) in concentrations ranging from 0.01 to 5.0 g ml−1 for up to 5 d results in apoptotic fragmentation of DNA. Kinetics experiments revealed that after 24 h a significant increase of DNA fragmentation already occurred. Besides cadmium a second stimulus was identified to also cause apoptosis in this species, namely exposure to heat-treated Escherichia coli. In order to support the finding that both cadmium and E. coli induce apoptosis in the sponge, expression of the apoptotic gene MA-3 was st…

CadmiumEcologychemistry.chemical_elementAquatic ScienceBiologybiology.organism_classificationmedicine.disease_causeMicrobiologyCell biologySuberites domunculaSpongeGemmule (pangenesis)DemospongechemistryApoptosismedicineDNA fragmentationEscherichia coliEcology Evolution Behavior and Systematicsapoptosis; marine sponge; biomarker; cadmium; bacteria
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Cloning and expression of the sponge longevity gene SDLAGL.

2000

Porifera show a characteristic Bauplan in spite of the fact that (almost) all cells are telomerase-positive and presumably provided with an unlimited potency for cell proliferation. One gene, SDLAGL, was identified in the marine sponge Suberites domuncula whose deduced polypeptide showed high sequence similarity to the longevity assurance genes from other Metazoa. While in single cells no transcripts of SDLAGL could be identified, high expression was seen after re-aggregation of single cells and in proliferating cells of primmorphs.

CloningEmbryologybiologyCell growthmedia_common.quotation_subjectLongevityLongevitySponges. Porifera. Suberites domuncula. Longevity assurance-likeProteinsbiology.organism_classificationBioinformaticsCell biologyPoriferaSuberites domunculaSpongeGene Expression RegulationGene expressionAnimalsCloning MolecularGenemedia_commonDevelopmental BiologyMechanisms of development
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Differentiation capacity of epithelial cells in the sponge Suberites domuncula.

2004

Sponges (phylum Porifera) represent the oldest metazoans. Their characteristic metazoan adhesion molecules and transcription factors enable them to establish a complex "Bauplan" ; three major differentiated cell types (epithelial cells, skeletal cells/sclerocytes, and contractile cells) can be distinguished. Since no molecular markers are as yet available to distinguish these somatic cells or the corresponding embryonic cells from which they originate, we have selected the following three genes for their characterization: noggin (a signaling molecule in development), a caspase that encodes an apoptotic molecule, and silicatein. Silicatein is an enzyme that is involved in the synthesis of si…

HistologySuberites domuncula; sponges; cell differentiationCellular differentiationMolecular Sequence DataPinacodermBiologyPathology and Forensic MedicineEvolution MolecularDemospongeMesohylAnimalsAmino Acid SequenceNogginCloning MolecularPhylogenySclerocyteCell AggregationSequence Homology Amino AcidSilicatesProteinsCell DifferentiationCell BiologyAnatomybiology.organism_classificationCell biologySuberites domunculaSpongeCaspasesCarrier ProteinsSuberitesCell and tissue research
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Okadaic Acid, an Apoptogenic Toxin for Symbiotic/Parasitic Annelids in the Demosponge Suberites domuncula

2006

ABSTRACT The role of okadaic acid (OA) in the defense system of the marine demosponge Suberites domuncula against symbiotic/parasitic annelids was examined. Bacteria within the mesohyl produced okadaic acid at concentrations between 32 ng/g and 58 ng/g of tissue (wet weight). By immunocytochemical methods and by use of antibodies against OA, we showed that the toxin was intracellularly stored in vesicles. Western blotting experiments demonstrated that OA also existed bound to a protein with a molecular weight of 35,000 which was tentatively identified as a galectin (by application of antigalectin antibodies). Annelids that are found in S. domuncula undergo apoptotic cell death. OA is one ca…

animal structuresAnnelidaMolecular Sequence DataApoptosismedicine.disease_causeApplied Microbiology and BiotechnologyMicrobiologychemistry.chemical_compoundOkadaic AcidInvertebrate MicrobiologymedicineAnimalsHumansMesohylAmino Acid SequenceSymbiosisGalectinAnnelidBacteriaEcologybiologyToxinOkadaic acidbiology.organism_classificationDNA-Binding ProteinsSuberites domunculachemistryBiochemistrySuberitesBacteriaTranscription FactorsFood ScienceBiotechnologySuberitesApplied and Environmental Microbiology
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Oxygen-Controlled Bacterial Growth in the Sponge Suberites domuncula: toward a Molecular Understanding of the Symbiotic Relationships between Sponge …

2004

ABSTRACT Sponges (phylum Porifera), known to be the richest producers among the metazoans of bioactive secondary metabolites, are assumed to live in a symbiotic relationship with microorganisms, especially bacteria. Until now, the molecular basis of the mutual symbiosis, the exchange of metabolites for the benefit of the other partner, has not been understood. We show with the demosponge Suberites domuncula as a model that the sponge expresses under optimal aeration conditions the enzyme tyrosinase, which synthesizes diphenols from monophenolic compounds. The cDNA isolated was used as a probe to determine the steady-state level of gene expression. The gene expression level parallels the lev…

DNA BacterialDNA ComplementaryOperonMicroorganismMolecular Sequence DataApplied Microbiology and BiotechnologyMicrobiologyMicrobial EcologyComplementary DNAGene clusterHydroxybenzoatesAnimalsAmino Acid SequenceSymbiosisGenePhylogenyEcologybiologyBacteriaBase SequenceSequence Homology Amino AcidMonophenol MonooxygenasePorphobilinogen Synthasebiology.organism_classificationPoriferaSuberites domunculaOxygenSpongeBiochemistryGenes BacterialMultigene FamilyBacteriaFood ScienceBiotechnology
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Suppression of allograft rejection in the sponge Suberites domuncula by FK506 and expression of genes encoding FK506-binding proteins in allografts.

2001

SUMMARY Porifera (sponges) are, evolutionarily, the oldest metazoan phylum. Recent molecular data suggest that these animals possess molecules similar to and homologous with those of the innate and adaptive immune systems of higher Metazoa. Applying the biological system of parabiosis and the technique of differential display of mRNA, two cDNAs encoding putative FK506-binding proteins were isolated. FK506 is successfully used in clinics as a drug to prevent allograft rejection and is toxic to Suberites domuncula cells in vitro at doses above 100ng ml−1. Autograft fusion of transplants from S. domuncula was not affected by FK506. Allograft non-fusion was not affected by FK506 at toxic doses;…

Graft RejectionDNA ComplementaryPhysiologyParabiosisMolecular Sequence DataGene ExpressionSequence HomologyAquatic SciencePolymerase Chain ReactionTacrolimusTacrolimus Binding ProteinsImmune systempolycyclic compoundsHomologous chromosomeAnimalsTransplantation HomologousAmino Acid SequenceCloning MolecularMolecular BiologyGeneEcology Evolution Behavior and SystematicsGene LibraryMessenger RNADifferential displaybiologyAnatomybiology.organism_classificationIn vitroCell biologyPoriferaSuberites domunculaInsect ScienceAnimal Science and ZoologyThe Journal of experimental biology
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Application of Cell Culture for the Production of Bioactive Compounds from Sponges:  Synthesis of Avarol by Primmorphs from Dysidea avara

2000

Among all metazoan phyla, sponges are known to produce the largest number of bioactive compounds. However, until now, only one compound, arabinofuranosyladenine, has been approved for application in humans. One major obstacle is the limited availability of larger quantities of defined sponge starting material. Recently, we introduced the in vitro culture of primmorphs from Suberites domuncula, which contain proliferating cells. Now we have established the primmorph culture also from the marine sponge Dysidea avara and demonstrate that this special form of sponge cell aggregates produces avarol, a sesquiterpenoid hydroquinone, known to display strong cytostatic activity especially against ma…

CroatiaCell Culture TechniquesPharmaceutical ScienceAntineoplastic AgentsSecondary metaboliteAntiviral AgentsAnalytical Chemistrychemistry.chemical_compoundBiosynthesisDrug DiscoverymedicineAnimalsIncubationChromatography High Pressure LiquidCell AggregationElectrophoresis Agar GelPharmacologybiologySecondary metabolites. Suberites domuncula. Geodia-cydonium. MarineOrganic ChemistryDNAbiology.organism_classificationIn vitroTerpenoidPoriferaSuberites domunculaSpongeComplementary and alternative medicinechemistryBiochemistryCell cultureRNAMolecular MedicineSpectrophotometry UltravioletChromatography Thin LayerSesquiterpenesThymidinemedicine.drugJournal of Natural Products
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Inducible ASABF-Type Antimicrobial Peptide from the Sponge Suberites domuncula: Microbicidal and Hemolytic Activity in Vitro and Toxic Effect on Moll…

2011

Since sponges, as typical filter-feeders, are exposed to a high load of attacking prokaryotic and eukaryotic organisms, they are armed with a wide arsenal of antimicrobial/cytostatic low-molecular-weight, non-proteinaceous bioactive compounds. Here we present the first sponge agent belonging to the group of ASABF-type antimicrobial peptides. The ASABF gene was identified and cloned from the demospongeSuberites domuncula. The mature peptide, with a length of 64 aa residues has a predicted pI of 9.24, and comprises the characteristic CSαβ structural motif. Consequently, the S. domuncula ASABF shares high similarity with the nematode ASABFs ; it is distantly related to the defensins. The recom…

ASABFAntimicrobial peptidesGastropodaMolecular Sequence DataPharmaceutical SciencePeptideMicrobial Sensitivity TestsGram-Positive BacteriaReal-Time Polymerase Chain ReactionArticleMicrobiology03 medical and health sciencesantimicrobial peptidesAnti-Infective AgentsSequence Analysis ProteinDrug DiscoveryAnimalsBittium sp.Structural motiflcsh:QH301-705.5Pharmacology Toxicology and Pharmaceutics (miscellaneous)spongesPhylogeny030304 developmental biologychemistry.chemical_classification0303 health sciencesbiology030306 microbiologyEffectorHemolytic AgentsapoptosisGeologyBittium spsponges; <em>Suberites domuncula</em>; ASABF; antimicrobial peptides; apoptosis; <em>Bittium</em> sp.biology.organism_classificationSuberites domunculasponges ; Suberites domuncula ; ASABF ; antimicrobial peptides ; apoptosis ; Bittium sp.Recombinant ProteinsSuberites domunculaSpongeEnzymelcsh:Biology (General)chemistryMolluscaSuberitesSuberitesAntimicrobial Cationic PeptidesMarine Drugs
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Cultural Heritage: Porifera (Sponges), A Taxon Successfully Progressing Paleontology, Biology, Biochemistry, Biotechnology and Biomedicine

2004

In 1876, Campbell (Campbell, 1876 [p. 446]) wrote “those beautiful ‘glass-rope sponges’, Hyalonema etc., have been found by our researchers to be ‘the most characteristic inhabitants of the great depths all over the world, and with them ordinary siliceous sponges, some of which rival Hyalospongiae in beauty’ “. The admiration for the beauty of sponges is documented since Aristotle (cited in Camus 1783), however the nature of these organisms and their phylogenetic position remained enigmatic until less than 10 years ago. E.g., in 1988 Loomis (Loomis, 1988 [p. 186]) wrote “the sponge cells are unspecialized flagellates held together by a glycoprotein extracellular matrix... they are multicell…

Siliceous spongeMulticellular organismSpongePaleontologyTaxonbiologyGeodia cydoniumZoologybiology.organism_classification
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Modulation of cytochrome P450 1A in sea bass liver by model substances and seawater extracts

1998

Abstract 1. 1. Immunochemical and catalytic assays for cytochrome P450 1A induction in liver of sea bass Dicentrarchus labrax treated with different model substances and organic seawater extracts have been performed. 2. 2. Ethoxyresorufin-O-deethylase (EROD) activities in fish liver were elevated by Arochlor 1254 (Aro), 3-methylcholanthrene (MC) and β-naphtoflavone (βNF). but not by phenobarbital (PB) treatment. 3. 3. Elevated levels of P450 1A protein followed by induction of EROD activity were detected only in βNF treated fish. 4. 4. Treatment of fish with organic seawater extracts revealed that there is no simple correlation between EROD activities and its catalyst P450 1A level. Seawate…

SerranidaeEcologyHealth Toxicology and MutagenesisCytochrome P450Aquatic ScienceBiologybiology.organism_classificationBiochemistryFish livermedicinebiology.proteinDicentrarchusPhenobarbitalSeawaterSea bassSimple correlationmedicine.drugAquatic Toxicology
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Functional Molecular Biodiversity: Assessing the Immune Status of Two Sponge Populations (Suberites domuncula) on the Molecular Level

2004

.  Porifera (sponges) are sessile filter feeders living primarily in the marine environment. In this study the population diversity of one species, the demosponge Suberites domuncula, has been investigated in an isolated area, the Limski Canal (LC) near Rovinj (Croatia; Mediterranean Sea), in comparison to that in the open sea (OS), only 10–20 km apart from the LC. The immune competence of the S. domuncula specimens was studied in response to exposure to the bacterial endotoxin LPS. The level of phosphorylation of the p38 kinase from specimens collected in LC is significantly lower than that of OS animals. To confirm the biochemical data on the molecular level, the technique of identificati…

Genetic diversityEcologybiologyEcologyLocus (genetics)Aquatic Sciencebiology.organism_classificationMolecular biologySuberites domunculaSpongeDemospongeGene expressionNorthern blotGeneEcology Evolution Behavior and SystematicsMarine Ecology
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Novel mechanism for the radiation-induced bystander effect: nitric oxide and ethylene determine the response in sponge cells.

2006

Until now the bystander effect had only been described in vertebrates. In the present study the existence of this effect has been demonstrated for the phylogenetically oldest metazoan phylum, the Porifera. We used the demosponge Suberites domuncula for the experiments in the two-chamber-system. The lower dish contained irradiated "donor" cells (single cells) and the upper dish the primmorphs ("recipient" primmorphs). The "donor" cells were treated with UV-B light (40 mJ/cm2) and 100 microM hydrogen peroxide (H2O2), factors that exist also in the natural marine aquatic environment of sponges; these factors caused a high level of DNA strand breaks followed by a reduced viability of the cells.…

EthyleneDNA ComplementaryDNA damageCell SurvivalUltraviolet RaysHealth Toxicology and MutagenesisMolecular Sequence DataGene ExpressionApoptosisBiologyNitric OxideModels BiologicalNitric oxideAmidohydrolaseschemistry.chemical_compoundGene expressionGeneticsBystander effectAnimalsAmino Acid SequenceCloning MolecularMolecular BiologyNitriteschemistry.chemical_classificationBase SequenceSequence Homology Amino AcidEthylenesbiology.organism_classificationCell biologyAmino acidPoriferaSuberites domunculachemistryBiochemistryApoptosisDNA DamageMutation research
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Stimulation of protein (collagen) synthesis in sponge cells by a cardiac myotrophin‐related molecule from Suberites domuncula

2000

The body wall of sponges (Porifera), the lowest metazoan phylum, is formed by two epithelial cell layers of exopinacocytes and endopinacocytes, both of which are associated with collagen fibrils. Here we show that a myotrophin-like polypeptide from the sponge Suberites domuncula causes the expression of collagen in cells from the same sponge in vitro. The cDNA of the sponge myotrophin was isolated; the potential open reading frame of 360 nt encodes a 120 aa long protein (Mr of 12,837). The sequence SUBDOMYOL shares high similarity with the known metazoan myotrophin sequences. The expression of SUBDOMYOL is low in single cells but high after formation of primmorph aggregates as well as in in…

Repetitive Sequences Amino AcidMolecular Sequence DataLysinePolymerase Chain ReactionBiochemistryMyotrophinComplementary DNAGeneticsProtein biosynthesisAnimalsAmino Acid SequenceCloning MolecularGrowth SubstanceseducationMolecular BiologyPhylogenyCell Sizeeducation.field_of_studyDose-Response Relationship DrugSequence Homology Amino AcidbiologySequence Analysis DNAbiology.organism_classificationRecombinant ProteinsIn vitroPoriferaUp-RegulationCell biologySuberites domunculaOpen reading frameSpongeIntercellular Signaling Peptides and ProteinsCollagenBiotechnologyThe FASEB Journal
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Iron Induces Proliferation and Morphogenesis in Primmorphs from the Marine SpongeSuberites domuncula

2002

Dissociated cells from marine demosponges retain their proliferation capacity if they are allowed to form special aggregates, the primmorphs. On the basis of incorporation studies and septin gene expression, we show that Fe3+ ions are required for the proliferation of cells in primmorphs from Suberites domuncula. In parallel, Fe3+ induced the expression of ferritin and strongly stimulated the synthesis of spicules. This result is supported by the finding that the enzymatic activity of silicatein, converting organosilicon to silicic acid, depends on Fe3+. Moreover, the expression of a scavenger receptor molecule, possibly involved in the morphology of spicules, depends on the presence of Fe3…

inorganic chemicalsIronMolecular Sequence DataMorphogenesisFluorescent Antibody TechniqueSeptinModels BiologicalPolymerase Chain ReactionFungal ProteinsSponge spiculeGene expressionGeneticsAnimalsHistidineAmino Acid SequenceReceptors ImmunologicScavenger receptorMolecular BiologyPhylogenyReceptors LipoproteinReceptors ScavengerSequence Homology Amino AcidbiologyEcologySilicatesMembrane ProteinsDNACell BiologyGeneral MedicineScavenger Receptors Class BBlotting Northernbiology.organism_classificationCathepsinsRecombinant ProteinsPoriferaCell biologySuberites domunculaFerritinSpongeFerritinsbiology.proteinCell DivisionDNA and Cell Biology
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Stress-70 proteins in marine mussel Mytilus galloprovincialis as biomarkers of environmental pollution: a field study.

2004

In the present work we have investigated levels of stress-70 proteins in the gills of mussel Mytilus galloprovincialis collected seasonally from subtidal rocky shores at 6 different sites of the Rovinj coastal area (Northern Adriatic, Croatia). 1-D analysis (SDS-PAGE) using monoclonal mouse antibodies anti-HSP70 detected two bands of stress-70 proteins, 70 and 72 kDa constitutively present during the year. 2-D analysis (IEF+SDS-PAGE) proved that the antibodies used detected HSP70 (pI 5.7–5.9) and HSP72 (pI 5.5–5.6). The quantification of stress-70 proteins was possible using 200 ng of external HSP70 protein standard included on every blot. Maximal levels of HSP72 and HSP70 were observed in …

Gillanimal structuresImmunoblottingZoologyEnvironmental pollutionAcclimatizationMediterranean seaMediterranean SeaAnimalsElectrophoresis Gel Two-DimensionalHSP70 Heat-Shock ProteinsMolluscalcsh:Environmental sciencesGeneral Environmental Sciencelcsh:GE1-350Analysis of VariancebiologyEcologyfungiTemperatureHeat shock proteins; Mytilus galloprovincialis; Stress-70 proteins; HSP70; HSP72; Environmental pollutionMusselbiology.organism_classificationBivalviaMytilusBivalviaElectrophoresis Polyacrylamide GelSeasonsEnvironmental PollutionBiomarkersDensitometryEnvironmental MonitoringEnvironment international
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Expression of silicatein and collagen genes in the marine sponge Suberites domuncula is controlled by silicate and myotrophin

2000

The major skeletal elements in the (Porifera) sponges, are spicules formed from inorganic material. The spicules in the Demospongiae class are composed of hydrated, amorphous silica. Recently an enzyme, silicatein, which polymerizes alkoxide substrates to silica was described from the sponge Tethya aurantia. In the present study the cDNA encoding silicatein was isolated from the sponge Suberites domuncula. The deduced polypeptide comprises 331 amino acids and has a calculated size of Mr 36 306. This cDNA was used as a probe to study the potential role of silicate on the expression of the silicatein gene. For these studies, primmorphs, a special form of aggregates composed of proliferating c…

chemistry.chemical_classificationeducation.field_of_studyBiologybiology.organism_classificationBiochemistrySilicateMicrobiologyAmino acidSuberites domunculaMyotrophinSpongechemistry.chemical_compoundSponge spiculechemistryBiochemistryComplementary DNAeducationSuberitesEuropean Journal of Biochemistry
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Sponge homologue to human and yeast gene encoding the longevity assurance polypeptide: differential expression in telomerase-positive and telomerase-…

2000

Porifera show a characteristic Bauplan in spite of the fact that (almost) all cells are telomerase-positive and presumably provided with an unlimited potency for cell proliferation. Studies revealed that telomerase-positive cells can be triggered to telomerase-negative cells by dissociating them into single cells. Single cells from the demosponge Suberites domuncula, in contrast to cells present in primmorphs (a special form of cell aggregates), lack the property to proliferate and they undergo apoptosis. One gene, SDLAGL, was identified in primmorphs that showed high sequence similarity to the longevity assurance genes from other Metazoa. In single cells no transcripts of SDLAGL could be i…

AgingTelomeraseDNA ComplementaryCell divisionCellGenes FungalMolecular Sequence DataGene ExpressionApoptosisBiologyYeastsGene expressionmedicineAnimalsHumansAmino Acid SequenceCloning MolecularGeneTelomeraseBase SequenceSequence Homology Amino AcidCell growthGene Expression ProfilingProteinsbiology.organism_classificationMolecular biologyPoriferaSuberites domunculaGene expression profilingmedicine.anatomical_structureBromodeoxyuridinePeptidesDevelopmental BiologyMechanisms of ageing and development
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