0000000000165253

AUTHOR

Nicolas Dross

showing 3 related works from this author

Protein diffusion in mammalian cell cytoplasm.

2011

We introduce a new method for mesoscopic modeling of protein diffusion in an entire cell. This method is based on the construction of a three-dimensional digital model cell from confocal microscopy data. The model cell is segmented into the cytoplasm, nucleus, plasma membrane, and nuclear envelope, in which environment protein motion is modeled by fully numerical mesoscopic methods. Finer cellular structures that cannot be resolved with the imaging technique, which significantly affect protein motion, are accounted for in this method by assigning an effective, position-dependent porosity to the cell. This porosity can also be determined by confocal microscopy using the equilibrium distribut…

Fluorescence-lifetime imaging microscopyCytoplasmMass diffusivity01 natural sciencesBiophysics Simulationslaw.inventionDiffusionlawMolecular Cell BiologyImage Processing Computer-Assistedprotein diffusionMammals0303 health sciencesMultidisciplinaryMicroscopy ConfocalChemistrysolulimaPhysicsQRCell biologyMedicineproteiinin diffuusioPorosityFluorescence Recovery After PhotobleachingResearch ArticleScienceCellsBiophysicsFluorescence correlation spectroscopyModels Biological03 medical and health sciencesdiffuusio (fysikaaliset ilmiöt)Bacterial ProteinsConfocal microscopy0103 physical sciencesAnimalsHumansComputer Simulation010306 general physicsBiology030304 developmental biologyNucleoplasmProtein transportta114ta1182Fluorescence recovery after photobleachingProteinsReproducibility of ResultssoluPhotobleachingProteiinien kuljetusLuminescent ProteinsMicroscopy FluorescenceCytoplasmCatsCellHeLa CellsPloS one
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Early Commissural Diencephalic Neurons Control Habenular Axon Extension and Targeting.

2016

Summary Most neuronal populations form on both the left and right sides of the brain. Their efferent axons appear to grow synchronously along similar pathways on each side, although the neurons or their environment often differ between the two hemispheres [1–4]. How this coordination is controlled has received little attention. Frequently, neurons establish interhemispheric connections, which can function to integrate information between brain hemispheres (e.g., [5]). Such commissures form very early, suggesting their potential developmental role in coordinating ipsilateral axon navigation during embryonic development [4]. To address the temporal-spatial control of bilateral axon growth, we…

0301 basic medicineEmbryo NonmammalianEfferentNeurogenesisThalamusBiologyTime-Lapse ImagingGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesmedicineAnimalsAxonDiencephalonZebrafishZebrafishBody PatterningNeuronsAxon extensionAnatomyCommissureZebrafish Proteinsbiology.organism_classificationAxon growthAxons030104 developmental biologymedicine.anatomical_structureHabenulanervous systemGeneral Agricultural and Biological SciencesNeuroscienceCurrent biology : CB
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Parvovirus induced alterations in nuclear architecture and dynamics.

2009

The nucleus of interphase eukaryotic cell is a highly compartmentalized structure containing the three-dimensional network of chromatin and numerous proteinaceous subcompartments. DNA viruses induce profound changes in the intranuclear structures of their host cells. We are applying a combination of confocal imaging including photobleaching microscopy and computational methods to analyze the modifications of nuclear architecture and dynamics in parvovirus infected cells. Upon canine parvovirus infection, expansion of the viral replication compartment is accompanied by chromatin marginalization to the vicinity of the nuclear membrane. Dextran microinjection and fluorescence recovery after ph…

Parvovirus CaninevirusesGreen Fluorescent Proteinslcsh:MedicineGenome ViralKidneyParvoviridae InfectionsParvovirus03 medical and health sciencesLääketieteen bioteknologia - Medical biotechnologymedicineAnimalsHumansNuclear membraneMolecular Biology/Chromatin Structurelcsh:Science030304 developmental biologyMolecular Biology/DNA ReplicationCell Nucleus0303 health sciencesMultidisciplinaryMicroscopy ConfocalbiologyParvoviruslcsh:R030302 biochemistry & molecular biologyDNA replicationFluorescence recovery after photobleachingDextransbiology.organism_classificationMolecular biologyChromatin3. Good healthChromatinCell biologyCell nucleusmedicine.anatomical_structureViral replicationVirology/Viral Replication and Gene RegulationCatslcsh:QCell Biology/Nuclear Structure and FunctionViral genome replicationFluorescence Recovery After PhotobleachingHeLa CellsResearch ArticlePloS one
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