0000000000297621

AUTHOR

Bojan Hamer

0000-0002-3142-8128

showing 10 related works from this author

Evaluation of the SOS/umu-test post-treatment assay for the detection of genotoxic activities of pure compounds and complex environmental mixtures.

2000

This study presents an evaluation of the SOS/umu-test after introducing an additional dilution and incubation in the post-treatment assay. This treatment reduces the influence of coloured test compounds that otherwise affect the colorimetric determination of the beta-galactosidase activity and the bacterial growth measurement during the testing of complex environmental samples. The post-treatment assay significantly increased the beta-galactosidase activity and consequently the enzyme induction ratios at higher doses of model genotoxins 4-nitroquinoline-N-oxide, N-methyl-N'-nitro-N-nitrosoguanidine, 2-aminoanthracene, benzo(a)pyrene with low or no effect on the sensitivity of the test itsel…

Salmonella typhimuriumMethylnitronitrosoguanidineHealth Toxicology and MutagenesisSegmented filamentous bacteriaRecombinant Fusion ProteinsSOS/umu-test; post-treatment assay; S.typhimurium; SOS response; genotoxicity assay; filamentous bacteria; environmental pollutionEnvironmental pollutionDNA-Directed DNA PolymeraseBacterial growthBiologyMicrobiologyAmes testBacterial ProteinsGeneticsBenzo(a)pyreneFood scienceSOS responseSOS Response GeneticsIncubationAnthracenesDose-Response Relationship DrugMutagenicity TestsEscherichia coli Proteinsbiology.organism_classificationbeta-Galactosidase4-Nitroquinoline-1-oxideSOS chromotestEnvironmental PollutantsBacteriaCell DivisionMutagensMutation research
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Marine molecular biology : An emerging field of biological sciences

2007

An appreciation of the potential applications of molecular biology is of growing importance in many areas of life sciences, including marine biology. During the past two decades, the development of sophisticated molecular technologies and instruments for biomedical research has resulted in significant advances in the biological sciences. However, the value of molecular techniques for addressing problems in marine biology has only recently begun to be cherished. It has been proven that the exploitation of molecular biological techniques will allow difficult research questions about marine organisms and ocean processes to be addressed. Marine molecular biology is a discipline, which strives t…

Marine biologyEcology (disciplines)FisheriesMarine BiologyBioengineeringMarine lifemarine biology ; molecular biology ; marine microbiology ; marine natural products ; marine ecology ; fisheriesMarine invertebratesBiological Science DisciplinesBiologyEcology and Evolutionary BiologyApplied Microbiology and BiotechnologyMolecular biologyBiological Science DisciplinesField (geography)General partnershipAnimalsMolecular BiologyEcosystemBiotechnology
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Activation of MAP kinase signaling pathway in the mussel Mytilus galloprovincialis as biomarker of environmental pollution

2010

Stimulation of MAP kinase signal transduction pathway by various stressful stimuli was investigated in the marine bivalve Mytilus galloprovincialis. Analyses were performed in animals exposed in laboratory to selected pollutants and in mussels collected in winter and summer along the eastern Adriatic coast (Croatia). Effects of oxidative stress, induced by tributyltin, hydrogen peroxide and water soluble fraction of diesel fuel on the activation/phosphorylation of the three Mitogen-Activated Protein Kinases (MAPKs) p38, JNK and ERK using a newly developed ELISA procedure were evaluated. MAP kinase activation was analyzed 1 h after exposure of mussels to chemical agents, and after recovery p…

MAPK/ERK pathwaymussel Mytilus galloprovincialisMAP Kinase Kinase 4MAP Kinase Signaling SystemHealth Toxicology and Mutagenesisp38 mitogen-activated protein kinasesEnvironmental pollutionEnzyme-Linked Immunosorbent Assaypollution ; biomarker ; MAP kinase ; mussel ; Mytilus galloprovincialis ; tributyltin ; diesel oil ; hydrogen peroxide010501 environmental sciencesAquatic Science01 natural sciencesp38 Mitogen-Activated Protein Kinases03 medical and health scienceschemistry.chemical_compoundAnimals14. Life underwaterExtracellular Signal-Regulated MAP Kinases030304 developmental biology0105 earth and related environmental sciencesMytilus0303 health sciencesbiologyKinaseMusselHydrogen Peroxidebiology.organism_classificationMytilusCell biologyEnzyme Activationchemistry13. Climate actionEnvironmental chemistryMitogen-activated protein kinaseTributyltinbiology.proteinbiomarkerMAP kinaseMitogen-Activated Protein KinasesTrialkyltin Compoundsenvironmental pollutionBiomarkersGasolineWater Pollutants Chemical
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Purification and partial characterization of a lectin protein complex, the clathrilectin, from the calcareous sponge Clathrina clathrus

2016

Carbohydrate-binding proteins were purified from the marine calcareous sponge Clathrina clathrus via affinity chromatography on lactose and N-acetyl glucosamine- agarose resins. Proteomic analysis of acrylamide gel separated protein subunits obtained in reducing conditions pointed out several candidates for lectins. Based on amino- acid sequence similarity, two peptides displayed homology with the jack bean lectin Concanavalin A, 
 including a conserved domain shared by proteins in the L-type lectin superfamily. An N-acetyl glucosamine - binding protein complex, named clathrilectin, was further purified via gel filtration chromatography, bioguided with a diagnostic rabbit erythrocyte haemag…

Proteomics0301 basic medicinePhysiologySyconBiochemistry03 medical and health sciencesAffinity chromatographyLectinsAnimalsTrypsinMolecular Biology030102 biochemistry & molecular biologybiologyCalcareous spongeHemagglutinationLectinClathrina clathrusbiology.organism_classificationMolecular biologyCell aggregationPoriferaPorifera ; Clathrina clathrus ; lectin ; N-acetyl-glucosamine ; cell aggregation ; proteomicsSponge030104 developmental biologyBiochemistryConcanavalin AProteolysisbiology.proteinCarbohydrate MetabolismFemaleRabbitsComparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology
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Porifera Lectins: diversity, physiological roles and biotechnological potential

2015

An overview on the diversity of 39 lectins from the phylum Porifera is presented, including 38 lectins, which were identified from the class of demosponges, and one lectin from the class of hexactinellida. Their purification from crude extracts was mainly performed by using affinity chromatography and gel filtration techniques. Other protocols were also developed in order to collect and study sponge lectins, including screening of sponge genomes and expression in heterologous bacterial systems. The characterization of the lectins was performed by Edman degradation or mass spectrometry. Regarding their physiological roles, sponge lectins showed to be involved in morphogenesis and cell intera…

bioactivitiesAnti-Inflammatory AgentsPharmaceutical ScienceHeterologousReviewBiologyGenomeMicrobiologyBiological Factors03 medical and health sciencesAnti-Infective AgentsAffinity chromatographyLectinsDrug Discoveryporifera; lectin; physiological roles; bioactivitiesAnimalsHumansCytotoxicityPharmacology Toxicology and Pharmaceutics (miscellaneous)physiological roleslcsh:QH301-705.5030304 developmental biology0303 health sciencesEdman degradationCytotoxinsporifera030302 biochemistry & molecular biologyLectinGeologybiology.organism_classificationAntimicrobialSpongeBiochemistrylcsh:Biology (General)biology.proteinlectinBiotechnology
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Effect of hypoosmotic stress by low salinity acclimation of Mediterranean mussels Mytilus galloprovincialis on biological parameters used for polluti…

2008

In the present study, we investigated the progressive acclimation of the mussel Mytilus galloprovincialis to different reduced seawater (SW) salinities and its effect on several biochemical markers and biotests. Mussels were purchased from a local mariculture facility during summer (SW temperature 27 degrees C, salinity 37.5 psu) and winter (13 degrees C, 37 psu) seasons, and transferred to the laboratory for acclimation to reduced SW salinities (37, 28, 18.5 and 11 psu). At the beginning and at the end of acclimation processes tests of mussel survival in air were provided. After 14 days of acclimation the DNA integrity, p38-MAPK activation, metallothionein induction, oxygen consumption rat…

GillGillsSalinityanimal structuresHealth Toxicology and MutagenesisMuscle ProteinsAquatic ScienceAcclimatizationp38 Mitogen-Activated Protein KinasesCondition indexAnimal scienceOxygen ConsumptionOsmotic PressureAnimalsMaricultureFluorometrySeawaterPhosphorylationMytilusPrincipal Component AnalysisbiologyEcologyfungiMusselMytilus galloprovincialis; biomarkers; salinity; temperature; environmental condition variations; hypoosmotic stressbiology.organism_classificationBivalviaMytilusSalinityElectrophoresis Polyacrylamide GelMetallothioneinSeasonsDNA DamageEnvironmental Monitoring
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A Microplate Assay for DNA Damage Determination (Fast Micromethod)in Cell Suspensions and Solid Tissues

1999

Abstract A rapid and convenient procedure for DNA damage determination in cell suspensions and solid tissues on single microplates was developed. The procedure is based on the ability of commercially available fluorochromes to interact preferentially with dsDNA in the presence of ssDNA, RNA, and proteins at high pH (>12.0), thus allowing direct measurements of DNA denaturation without sample handling or stepwise DNA separations. The method includes a simple and rapid 40-min sample lysis in the presence of EDTA, SDS, and high urea concentration at pH 10, followed by time-dependent DNA denaturation at pH 12.4 after NaOH addition. The time course and the extent of DNA denaturation is followed …

ChromatographyLysisDNA damageBiophysicsRNACell Biologymedicine.disease_causeBiochemistryFluorescencechemistry.chemical_compoundchemistryUreamedicineMolecular BiologyDNAGenotoxicityHomogenization (biology)Analytical Biochemistry
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Axial (apical-basal) expression of pro-apoptotic and pro-survival genes in the lake baikal demosponge Lubomirskia baicalensis.

2006

Like in all other Metazoa, also in sponges (Porifera) proliferation, differentiation, and death of cells are controlled by apoptotic processes, thus allowing the establishment of a Bauplan (body plan). The demosponge Lubomirskia baicalensis from the Lake Baikal is especially suitable to assess the role of the apoptotic molecules, since its grade of construction is highly elaborated into an encrusting base and branches composed of modules lined up along the apical-basal axis. The four cDNAs, ALG-2, BAK, MA-3, and Bcl-2, were isolated from this sponge species. The expression levels of these genes follow characteristic gradients. While the proapoptotic genes are highly expressed at the base of…

DNA ComplementaryMolecular Sequence DataGene ExpressionApoptosisFresh WaterModels BiologicalConserved sequenceRussiaDemospongePhylogeneticsGene expressionCell polarityGeneticsAnimalsAmino Acid SequenceEF Hand MotifsMolecular BiologyGeneCaspaseConserved SequencePhylogenyCaspase 8Glutathione PeroxidasebiologySequence Homology Amino AcidEcologyCaspase 3Cell PolarityCell BiologyGeneral MedicineSequence Analysis DNAbiology.organism_classificationBlotting NorthernCell biologyPoriferaProtein Structure TertiarySpongeProto-Oncogene Proteins c-bcl-2Caspasesbiology.proteinDNA and cell biology
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Selenium affects biosilica formation in the demosponge Suberites domuncula

2005

Selenium is a trace element found in freshwater and the marine environment. We show that it plays a major role in spicule formation in the demosponge Suberites domuncula. If added to primmorphs, an in vitro sponge cell culture system, it stimulates the formation of siliceous spicules. Using differential display of transcripts, we demonstrate that, after a 72-h exposure of primmorphs to selenium, two genes are up-regulated; one codes for selenoprotein M and the other for a novel spicule-associated protein. The deduced protein sequence of selenoprotein M (14 kDa) shows characteristic features of metazoan selenoproteins. The spicule-associated protein (26 kDa) comprises six characteristic repe…

SpiculeBlotting WesternMolecular Sequence DataFluorescent Antibody Techniquechemistry.chemical_elementselenium; silica; silicatein; spicules; spongesBiochemistryAntibodiesSeleniumSponge spiculeDemospongeAnimalsAmino Acid SequenceSelenoproteinsMolecular Biologychemistry.chemical_classificationGlutathione PeroxidaseBase SequencebiologyGene Expression ProfilingProteinsCell BiologyAnatomySilicon Dioxidebiology.organism_classificationCathepsinsUp-RegulationAmino acidSuberites domunculaSpongeBiochemistrychemistrySelenoproteinSuberitesSeleniumFEBS Journal
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Stress-70 proteins in marine mussel Mytilus galloprovincialis as biomarkers of environmental pollution: a field study.

2004

In the present work we have investigated levels of stress-70 proteins in the gills of mussel Mytilus galloprovincialis collected seasonally from subtidal rocky shores at 6 different sites of the Rovinj coastal area (Northern Adriatic, Croatia). 1-D analysis (SDS-PAGE) using monoclonal mouse antibodies anti-HSP70 detected two bands of stress-70 proteins, 70 and 72 kDa constitutively present during the year. 2-D analysis (IEF+SDS-PAGE) proved that the antibodies used detected HSP70 (pI 5.7–5.9) and HSP72 (pI 5.5–5.6). The quantification of stress-70 proteins was possible using 200 ng of external HSP70 protein standard included on every blot. Maximal levels of HSP72 and HSP70 were observed in …

Gillanimal structuresImmunoblottingZoologyEnvironmental pollutionAcclimatizationMediterranean seaMediterranean SeaAnimalsElectrophoresis Gel Two-DimensionalHSP70 Heat-Shock ProteinsMolluscalcsh:Environmental sciencesGeneral Environmental Sciencelcsh:GE1-350Analysis of VariancebiologyEcologyfungiTemperatureHeat shock proteins; Mytilus galloprovincialis; Stress-70 proteins; HSP70; HSP72; Environmental pollutionMusselbiology.organism_classificationBivalviaMytilusBivalviaElectrophoresis Polyacrylamide GelSeasonsEnvironmental PollutionBiomarkersDensitometryEnvironmental MonitoringEnvironment international
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