0000000000342016

AUTHOR

David B. Mark Welch

showing 4 related works from this author

Phylogeny of Syndermata (syn. Rotifera): Mitochondrial gene order verifies epizoic Seisonidea as sister to endoparasitic Acanthocephala within monoph…

2015

Abstract A monophyletic origin of endoparasitic thorny-headed worms (Acanthocephala) and wheel-animals (Rotifera) is widely accepted. However, the phylogeny inside the clade, be it called Syndermata or Rotifera, has lacked validation by mitochondrial (mt) data. Herein, we present the first mt genome of the key taxon Seison and report conflicting results of phylogenetic analyses: while mt sequence-based topologies showed monophyletic Lemniscea (Bdelloidea + Acanthocephala), gene order analyses supported monophyly of Pararotatoria (Seisonidea + Acanthocephala) and Hemirotifera (Bdelloidea + Pararotatoria). Sequence-based analyses obviously suffered from substitution saturation, compositional …

0301 basic medicineGeneticsLife Cycle StagesMitochondrial DNAPhylogenetic treeRotiferaBiologybiology.organism_classificationGenomeAcanthocephala03 medical and health sciencesMonophylyGenes Mitochondrial030104 developmental biologyTaxonPhylogeneticsGene OrderGenome MitochondrialGeneticsAnimalsCladeAcanthocephalaMolecular BiologyPhylogenyEcology Evolution Behavior and SystematicsMolecular Phylogenetics and Evolution
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Support for the monophyletic origin of Gnathifera from phylogenomics

2009

The monophyletic origin of Spiralia within the metazoan tree of life is supported by many large-scale phylogenomic data. While there is now substantial molecular evidence for Lophotrochozoa being a monophyletic taxon within Spiralia, the phylogenetic affiliations of many other spiralian phyla remain unclear. Here we focus on the question of a monophyletic taxon Gnathifera, which was originally characterized by jaw morphology as comprising the taxa Rotifera, Acanthocephala and Gnathostomulida. Based on a large-scale molecular sequence dataset of 11,146 amino acid residues, we reconstructed phylogenetic trees of spiralian phyla using maximum-likelihood and Bayesian approaches. We obtain the f…

Ribosomal ProteinsParaphylyLikelihood FunctionsModels GeneticbiologyRotiferaLophotrochozoaZoologyBayes TheoremGenomicsbiology.organism_classificationEvolution MolecularMonophylyTaxonSequence Analysis ProteinPhylogenomicsGeneticsGnathiferaAnimalsSpiraliaCladeSequence AlignmentMolecular BiologyPhylogenyEcology Evolution Behavior and SystematicsMolecular Phylogenetics and Evolution
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Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy

2016

Understanding patterns and processes in biological diversity is a critical task given current and rapid environmental change. Such knowledge is even more essential when the taxa under consideration are important ecological and evolutionary models. One of these cases is the monogonont rotifer cryptic species complex Brachionus plicatilis, which is by far the most extensively studied group of rotifers, is widely used in aquaculture, and is known to host a large amount of unresolved diversity. Here we collate a dataset of previously available and newly generated sequences of COI and ITS1 for 1273 isolates of the B. plicatilis complex and apply three approaches in DNA taxonomy (i.e. ABGD, PTP, …

0106 biological sciences0301 basic medicineSpecies complexEvolutionITS1Aquatic ScienceBiology010603 evolutionary biology01 natural sciencesZooplanktonCOI03 medical and health sciencesPhylogeneticsZoologiaGenome sizePhylogenetic treeEcologyBiodiversityPhylogenetic comparative methodsBrachionusPhylogenetic comparative methodsbiology.organism_classificationBiodiversitat030104 developmental biologyTaxonEvolutionary biologyCryptic speciesTaxonomy (biology)Evolució (Biologia)Hydrobiologia
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Transcriptome data reveal syndermatan relationships and suggest the evolution of endoparasitism in acanthocephala via an epizoic stage

2014

The taxon Syndermata comprises the biologically interesting wheel animals ("Rotifera": Bdelloidea + Monogononta + Seisonidea) and thorny-headed worms (Acanthocephala), and is central for testing superordinate phylogenetic hypotheses (Platyzoa, Gnathifera) in the metazoan tree of life. Recent analyses of syndermatan phylogeny suggested paraphyly of Eurotatoria (free-living bdelloids and monogononts) with respect to endoparasitic acanthocephalans. Data of epizoic seisonids, however, were absent, which may have affected the branching order within the syndermatan clade. Moreover, the position of Seisonidea within Syndermata should help in understanding the evolution of acanthocephalan endoparas…

Animal EvolutionScienceMolecular Sequence DataRotiferaAnimal PhylogeneticsTranscriptomesAcanthocephala570 Life sciencesGenome Analysis Toolsddc:570GeneticsAnimalsEvolutionary SystematicsParasitesBiologyPhylogenyTaxonomyEvolutionary BiologyLife Cycle StagesQRComputational BiologyGenomicsBiological EvolutionOrganismal EvolutionPhylogeneticsAnimal TaxonomyMedicineTranscriptomeAnimal GeneticsZoologyResearch Article570 Biowissenschaften
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