0000000000482492

AUTHOR

Meilani Wibowo

0000-0003-2462-3328

showing 2 related works from this author

Hydrogen abstraction by photoexcited benzophenone: consequences for DNA photosensitization

2016

International audience; We report a computational investigation of the hydrogen abstraction (H-abstraction) induced by triplet benzophenone (3BP) on thymine nucleobase and backbone sugar. The chemical process is studied using both high level multiconfigurational perturbation and density functional theory. Both methods show good agreement in predicting small kinetic barriers. Furthermore the behavior of benzophenone in DNA is simulated using molecular dynamics and hybrid quantum mechanics/molecular mechanics methods. The accessibility of benzophenone to the labile hydrogens within B-DNA is demonstrated, as well as the driving force for this reaction. We evidence a strong dependence of the H-…

LightHydrogenGeneral Physics and Astronomychemistry.chemical_element02 engineering and technologyMolecular Dynamics Simulation010402 general chemistryPhotochemistryHydrogen atom abstraction01 natural sciencesMolecular mechanicsNucleobaseBenzophenoneschemistry.chemical_compoundMolecular dynamicsComputational chemistryBenzophenoneComputer Simulation[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyPhysical and Theoretical ChemistryDNA021001 nanoscience & nanotechnology[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation0104 chemical sciencesThyminechemistryDensity functional theory0210 nano-technologyHydrogen
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Resolving the Benzophenone DNA-Photosensitization Mechanism at QM/MM Level

2015

International audience; Benzophenone, the parent of the diarylketone family, is a versatile compound commonly used as a UV blocker. It may also trigger triplet-based DNA photosensitization. Therefore, benzophenone is involved in DNA photodamage induction. In the absence of experimentally resolved structure, the mechanism of DNA damage production remains elusive. Employing a hybrid quantum mechanics/molecular mechanics approach, here we address the spin transfer mechanism between this drug and proximal thymine, that is, the DNA nucleobase most prone to suffer triplet damages.

Photosensitizing AgentsDNA PhotosensitizationDNA damageChemistryDNAMolecular Dynamics SimulationPhotochemistryMolecular mechanicsQM/MM3. Good healthThymineNucleobaseQM/MM[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistryBenzophenoneschemistry.chemical_compoundMolecular dynamicsBenzophenoneEnergy TransferBenzophenoneQuantum TheoryGeneral Materials SciencePhysical and Theoretical ChemistryDNA
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