0000000000560451

AUTHOR

Simit Patel

showing 4 related works from this author

The genomic footprint of climate adaptation inChironomus riparius

2017

The gradual heterogeneity of climatic factors produces continuously varying selection pressures across geographic distances that leave signatures of clinal variation in the genome. Separating signatures of clinal adaptation from signatures of other evolutionary forces, such as demographic processes, genetic drift, and adaptation to specific non-clinal conditions of the immediate local environment is a major challenge. Here, we examine climate adaptation in five natural populations of the non-biting midge Chironomus riparius sampled along a climatic gradient across Europe. Our study integrates experimental data, individual genome resequencing, Pool-Seq data, and population genetic modelling.…

0301 basic medicineCandidate geneAcclimatizationClimateClimate ChangePopulationved/biology.organism_classification_rank.speciesBiologyGenomeChironomidaeGene flow03 medical and health sciencesGenetic driftGeneticsAnimalsPopulation growthSelection GeneticEvolutionary dynamicseducationEcosystemEcology Evolution Behavior and SystematicsSelection (genetic algorithm)Local adaptationChironomus ripariuseducation.field_of_studyEcologyved/biologyGenetic DriftGenomicsAdaptation PhysiologicalEuropeGenetics Population030104 developmental biologyEvolutionary biologyAdaptation
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Characterizing a hybrid zone between a cryptic species pair of freshwater snails.

2015

Characterizing hybrid zones and their dynamics is a central goal in evolutionary biology, but this is particularly challenging for morphologically cryptic species. The lack of conspicuous divergence between parental types means intermediate hybrid forms often go undetected. We aimed to detect and characterize a suspected hybrid zone between a pair of morphologically cryptic lineages of the freshwater snail, Radix. We sampled Radix from across a contact zone between two mitochondrial lineages (Radix balthica and an undescribed lineage termed 'MOTU3') and detected admixture between two nuclear genotype clusters, which were significantly but not categorically associated with the mitochondrial …

Species complexEcological selectionGenotypeClimate ChangeMolecular Sequence DataSnailsFresh WaterDNA MitochondrialFreshwater snailHybrid zoneGeographical distanceGenetic variationGeneticsAnimalsDNA Barcoding TaxonomicSelection GeneticEcology Evolution Behavior and SystematicsbiologyGeographyModels GeneticEcologyTemperatureGenetic VariationBayes TheoremCline (biology)biology.organism_classificationBiological EvolutionRadix balthicaHybridization GeneticMicrosatellite RepeatsMolecular ecology
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Data from: Characterising a hybrid zone between a cryptic species pair of freshwater snails

2014

Characterising hybrid zones and their dynamics is a central goal in evolutionary biology, but this is particularly challenging for morphologically cryptic species. The lack of conspicuous divergence between parental types means intermediate hybrid forms often go undetected. We aimed to detect and characterise a suspected hybrid zone between a pair of morphologically cryptic lineages of the freshwater snail, Radix. We sampled Radix from across a contact zone between two mitochondrial lineages (Radix balthica and an undescribed lineage termed MOTU3) and detected admixture between two nuclear genotype clusters, which were significantly but not categorically associated with the mitochondrial li…

Europemedicine and health carecryptic speciesSpainClimate ChangePyreneesRadix balthicaMedicineprecipitation gradientFrancehybrid zoneLife sciences
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Data from: Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix

2015

Background: Life history traits like developmental time, age and size at maturity are directly related to fitness in all organisms and play a major role in adaptive evolution and speciation processes. Comparative genomic or transcriptomic approaches to identify positively selected genes involved in species divergence can help to generate hypotheses on the driving forces behind speciation. Here we use a bottom-up approach to investigate this hypothesis by comparative analysis of orthologous transcripts of four closely related European Radix species. Results: Snails of the genus Radix occupy species specific distribution ranges with distinct climatic niches, indicating a potential for natural…

medicine and health careRadixpositive selectionRadix balthicaMedicinemollusksAdaptive sequence evolutionLife sciences
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