0000000000807748

AUTHOR

Maude M. David

0000-0003-1561-418x

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Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach

2009

International audience; Denitrification is a microbial respiratory process contributing to the emission of greenhouse gas. The study of denitrifying bacteria, like that of others, is hindered by characteristics that can prevent up to 99% of soil bacteria from being cultivated in vitro. New approaches based on the direct extraction of DNA from the natural environment and PCR amplifications can overcome limitations due to bacterial unculturability, but until now their application to denitrification genes has led only to the recovery of partial sequences for some of these genes.Our goals in this study were to apply a metagenomic approach characterized by cloning of DNA extracted from soil and …

Denitrification[SDV]Life Sciences [q-bio]Microbial metabolismNIRKApplied Microbiology and Biotechnology[ SPI.NRJ ] Engineering Sciences [physics]/Electric powerGene OrderGene clusterPHYLOGENETIC ANALYSISNITROUS-OXIDE REDUCTASESoil MicrobiologyComputingMilieux_MISCELLANEOUS2. Zero hunger0303 health sciencesdenitrificationEcologyfood and beveragesFAMILYCOMMUNITYPCRMultigene Family[SDE]Environmental SciencesSoil microbiologyMetabolic Networks and PathwaysBiotechnologyDNA BacterialDOMAINSNitrogenMolecular Sequence DataComputational biologyBiologyMicrobial Ecologysoil03 medical and health sciencesmetagenomic;n-cycle;denitrification;soil Bacterial ProteinsOperonBotanymetagenomicNitrogen cycle030304 developmental biology[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyNITRIC-OXIDEBacteriaSequence Homology Amino Acid030306 microbiology[SPI.NRJ]Engineering Sciences [physics]/Electric powerSequence Analysis DNAn-cyclebiology.organism_classificationDENITRIFYING PSEUDOMONAS-STUTZERIMetagenomicsPyrosequencing[SDE.BE]Environmental Sciences/Biodiversity and EcologyBacteria[SPI.NRJ] Engineering Sciences [physics]/Electric powerFood ScienceNOSZ GENES
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