0000000000895646

AUTHOR

Irene Cardinali

showing 3 related works from this author

Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

2015

Background The current extensive use of the domestic goat (Capra hircus) is the result of its medium size and high adaptability as multiple breeds. The extent to which its genetic variability was influenced by early domestication practices is largely unknown. A common standard by which to analyze maternally-inherited variability of livestock species is through complete sequencing of the entire mitogenome (mitochondrial DNA, mtDNA). Results We present the first extensive survey of goat mitogenomic variability based on 84 complete sequences selected from an initial collection of 758 samples that represent 60 different breeds of C. hircus, as well as its wild sister species, bezoar (Capra aega…

Most recent common ancestor[SDV]Life Sciences [q-bio]PopulationMolecular Sequence DataMtDNA haplogroupsCapra aegagrusBiologyDNA MitochondrialHaplogroupDomesticationQH301Settore AGR/17 - Zootecnica Generale E Miglioramento GeneticoCapra hircusGeneticsAnimalsCapra aegagruDomesticationeducationQH426Phylogeny2. Zero hungereducation.field_of_studyOrigin of Capra hircusGenomeMtDNA haplogroupPhylogenetic treeGoatsHaplotypeGenetic VariationDNAOrigin of Capra hircuMitochondrialCapra aegagrus; Domestication; Goat mitochondrial genome; MtDNA haplogroups; Origin of Capra hircus; Biotechnology; GeneticsHaplotypesEvolutionary biologyGoat mitochondrial genomeGenome MitochondrialCapra aegagrus; Domestication; Goat mitochondrial genome; MtDNA haplogroups; Origin of Capra hircus; Animals; DNA Mitochondrial; Female; Genetic Variation; Genome Mitochondrial; Goats; Haplotypes; Molecular Sequence Data; Phylogeny; Biotechnology; GeneticsmtDNA haplogroupsFemaleResearch ArticleHuman mitochondrial DNA haplogroupBiotechnology
researchProduct

Additional file 2: of Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

2015

Table S5. Goat haplogroup frequencies based on modern and ancient control-region mtDNA data from this study and downloaded from GenBanka. Table S6. Diagnostic mutational motifs of goat mtDNA haplogroups and sub-haplogroups. Table S7. A comparison of the phylogeographic features of goat, taurine and horse mtDNA haplogroups identified by analyzing domestic breeds from Eurasia. Table S8. Oligonucleotides used to amplify and to sequence (Sanger method) the goat mitochondrial genome. (PDF 652Â kb)

genetic structuressocial scienceshumanitieseye diseasesgeographic locations
researchProduct

Additional file 1: of Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

2015

Table S1. Sources for the 758 goat control-region sequences. Table S2. Control-region haplotypes and haplogroup classification of the 758 mtDNA sequences from Capra aegagrus (n = 19) and Capra hircus (n = 739). Table S3. Partial coding-region haplotypes and haplogroup classification of two bezoar mtDNAs. Table S4. Source and haplogroup affiliation of the goat complete mtDNA sequences. Figure S1. Nucleotide diversity and total number of substitutions along the entire mtDNA. Figure S2. A putative most parsimonious tree of 84 complete mtDNA sequences from goats. (XLSX 1268 kb)

eye diseases
researchProduct