0000000001038560
AUTHOR
G. Camps-valls
Neural Networks in ECG Classification
In this chapter, we review the vast field of application of artificial neural networks in cardiac pathology discrimination based on electrocardiographic signals. We discuss advantages and drawbacks of neural and adaptive systems in cardiovascular medicine and catch a glimpse of forthcoming developments in machine learning models for the real clinical environment. Some problems are identified in the learning tasks of beat detection, feature selection/extraction, and classification, and some proposals and suggestions are given to alleviate the problems of interpretability, overfitting, and adaptation. These have become important problems in recent years and will surely constitute the basis of…
A Methodology to Derive Global Maps of Leaf Traits Using Remote Sensing and Climate Data
This paper introduces a modular processing chain to derive global high-resolution maps of leaf traits. In particular, we present global maps at 500 m resolution of specific leaf area, leaf dry matter content, leaf nitrogen and phosphorus content per dry mass, and leaf nitrogen/phosphorus ratio. The processing chain exploits machine learning techniques along with optical remote sensing data (MODIS/Landsat) and climate data for gap filling and up-scaling of in-situ measured leaf traits. The chain first uses random forests regression with surrogates to fill gaps in the database (> 45% of missing entries) and maximizes the global representativeness of the trait dataset. Plant species are then a…
Neural and Kernal Methods for Therapeutic Drug Monitoring
Recently, important advances in dosage formulations, therapeutic drug monitoring (TDM), and the emerging role of combined therapies have resulted in a substantial improvement in patients’ quality of life. Nevertheless, the increasing amounts of collected data and the non-linear nature of the underlying pharmacokinetic processes justify the development of mathematical models capable of predicting concentrations of a given administered drug and then adjusting the optimal dosage. Physical models of drug absorption and distribution and Bayesian forecasting have been used to predict blood concentrations, but their performance is not optimal and has given rise to the appearance of neural and kern…
Persistence in complex systems
Persistence is an important characteristic of many complex systems in nature, related to how long the system remains at a certain state before changing to a different one. The study of complex systems' persistence involves different definitions and uses different techniques, depending on whether short-term or long-term persistence is considered. In this paper we discuss the most important definitions, concepts, methods, literature and latest results on persistence in complex systems. Firstly, the most used definitions of persistence in short-term and long-term cases are presented. The most relevant methods to characterize persistence are then discussed in both cases. A complete literature r…
Earth system data cubes unravel global multivariate dynamics
Understanding Earth system dynamics in light of ongoing human intervention and dependency remains a major scientific challenge. The unprecedented availability of data streams describing different facets of the Earth now offers fundamentally new avenues to address this quest. However, several practical hurdles, especially the lack of data interoperability, limit the joint potential of these data streams. Today, many initiatives within and beyond the Earth system sciences are exploring new approaches to overcome these hurdles and meet the growing interdisciplinary need for data-intensive research; using data cubes is one promising avenue. Here, we introduce the concept of Earth system data cu…
Estimating and understanding crop yields with explainable deep learning in the Indian Wheat Belt
Forecasting crop yields is becoming increasingly important under the current context in which food security needs to be ensured despite the challenges brought by climate change, an expanding world population accompanied by rising incomes, increasing soil erosion, and decreasing water resources. Temperature, radiation, water availability and other environmental conditions influence crop growth, development, and final grain yield in a complex non-linear manner. Machine learning (ML) techniques, and deep learning (DL) methods in particular, can account for such non-linear relations between yield and its covariates. However, they typically lack transparency and interpretability, since the way t…
Scaling carbon fluxes from eddy covariance sites to globe: synthesis and evaluation of the FLUXCOM approach
FLUXNET comprises globally distributed eddy-covariance-based estimates of carbon fluxes between the biosphere and the atmosphere. Since eddy covariance flux towers have a relatively small footprint and are distributed unevenly across the world, upscaling the observations is necessary to obtain global-scale estimates of biosphere–atmosphere exchange. Based on cross-consistency checks with atmospheric inversions, sun-induced fluorescence (SIF) and dynamic global vegetation models (DGVMs), here we provide a systematic assessment of the latest upscaling efforts for gross primary production (GPP) and net ecosystem exchange (NEE) of the FLUXCOM initiative, where different machine learning methods…
Clasificación de usos del suelo a partir de imágenes Sentinel-2
[EN] Sentinel-2 (S2), a new ESA satellite for Earth observation, accounts with 13 bands which provide high-quality radiometric images with an excellent spatial resolution (10 and 20 m) ideal for classification purposes. In this paper, two objectives have been addressed: to determine the best classification method for S2, and to quantify its improve-ment with respect to the SPOT operational mission. To do so, four classifiers (LDA, RF, Decision Trees, K-NN) have been selected and applied to two different agricultural areas located in Valencia (Spain) and Buenos Aires (Argentina). All classifiers were tested using, on the one hand, all the S2 bands and, on the other hand, only selecting those…
Gridding artifacts on ENVISAT/MERIS temporal series
Earth observation satellites are a valuable source of data that can be used to better understand the Earth system dynamics. However, analysis of satellite image time series requires an accurate spatial co-registration so that the multi-temporal pixel entities offer a true temporal view of the study area. This implies that all the observations must be mapped to a common system of grid cells (gridding). Two common grids can be defined as a reference: (1) a grid defined by an external dataset in a given coordinate system or (2) a grid defined by one of the images of the time series. The aim of this paper is to study the impact that gridding has on the quality of ENVISAT/MERIS image time series…
Cloud screening and multitemporal unmixing of MERIS FR data
The operational use of MERIS images can be hampered by the presence of clouds. This work presents a cloud screening algorithm that takes advantage of the high spectral and radiometric resolutions of MERIS and the specific location of some of its bands to increase the cloud detection accuracy. Moreover, the proposed algorithm provides a per-pixel probabilistic map of cloud abundance rather than a binary cloud presence flag. In order to test the proposed algorithm we propose a cloud screening validation method based on temporal series. In addition, we evaluate the impact of the cloud screening in a multitemporal unmixing application, where a temporal series of MERIS FR images acquired over Th…
Summarizing the state of the terrestrial biosphere in few dimensions
Abstract. In times of global change, we must closely monitor the state of the planet in order to understand the full complexity of these changes. In fact, each of the Earth's subsystems – i.e., the biosphere, atmosphere, hydrosphere, and cryosphere – can be analyzed from a multitude of data streams. However, since it is very hard to jointly interpret multiple monitoring data streams in parallel, one often aims for some summarizing indicator. Climate indices, for example, summarize the state of atmospheric circulation in a region. Although such approaches are also used in other fields of science, they are rarely used to describe land surface dynamics. Here, we propose a robust method to crea…
Autocorrelation Metrics to Estimate Soil Moisture Persistence From Satellite Time Series: Application to Semiarid Regions
Satellite-derived soil moisture (SM) products have become an important information source for the study of land surface processes in hydrology and land monitoring. Characterizing and estimating soil memory and persistence from satellite observations is of paramount relevance, and has deep implications in ecology, water management, and climate modeling. In this work, we address the problem of SM persistence estimation from microwave sensors using several autocorrelation metrics that, unlike traditional approaches, build on accurate estimates of the autocorrelation function from nonuniformly sampled time series. We show how the choice of the autocorrelation estimator can have a dramatic impac…