0000000001182317

AUTHOR

Jouni Laakso

showing 46 related works from this author

Functional diversity of decomposer organisms in relation to primary production

1998

Abstract The term `biodiversity' is claimed to lack connections to a serious scientific background. In this work, we approached the concept of biodiversity from a functional point of view by asking: “At what level of the ecological organization (species, trophic species/feeding guilds, trophic levels etc.) should reduction in biodiversity matter to bring about visible changes in ecosystem performance?” We investigate the concepts of `functional diversity' and `ecosystem performance' in relation to feeding habits (such as fungivory, detritivory etc.) of soil fauna and plant growth. After analysing the results of a number of microcosm studies, we came into the following conclusions: (i) troph…

Biomass (ecology)Food chainEcologyTrophic speciesEcologySoil ScienceTrophic state indexEcosystem diversityBiologyTrophic cascadeAgricultural and Biological Sciences (miscellaneous)Food webTrophic levelApplied Soil Ecology
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Association of colony morphotypes with virulence, growth and resistance against protozoan predation in the fish pathogen Flavobacterium columnare.

2014

Many opportunistic pathogens can alternate between inside- and outside-host environments during their life cycle. The opportunistic fish pathogen Flavobacterium columnare is an inhabitant of the natural microbial community and causes significant yearly losses in aquaculture worldwide. The bacterium grows in varying colony morphotypes that are associated with either virulence (rhizoid type) or resistance to starvation and phages (rough type). Rough type strains can arise spontaneously or can be induced by phage infection. To identify the determinants of morphotype fitness, we measured virulence, growth parameters, biofilm-forming ability and resistance to amoeba and ciliate predation of both…

PopulationVirulenceApplied Microbiology and BiotechnologyMicrobiologyFlavobacteriumMicrobiologyTetrahymena thermophila03 medical and health sciencesFish DiseasesAnimalsBacteriophages14. Life underwatereducationPathogenZebrafish030304 developmental biologyCiliate0303 health scienceseducation.field_of_studyAcanthamoeba castellaniiEcologybiologyVirulence030306 microbiologyfungiBiofilmbiology.organism_classificationRhizoidFlavobacterium columnareFlavobacteriumFEMS microbiology ecology
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A mechanistic underpinning for sigmoid dose-dependent infection

2016

0106 biological sciences0301 basic medicineUnderpinningenvironmentally transmitted diseasesDose dependenceSigmoid functionBiology010603 evolutionary biology01 natural sciencesinfektiot03 medical and health sciences030104 developmental biologytartuntatauditta1181infectionsNeuroscienceEcology Evolution Behavior and SystematicsOikos
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FLUCTUATING TEMPERATURE LEADS TO EVOLUTION OF THERMAL GENERALISM AND PREADAPTATION TO NOVEL ENVIRONMENTS

2013

Environmental fluctuations can select for generalism, which is also hypothesized to increase organisms' ability to invade novel environments. Here, we show that across a range of temperatures, opportunistic bacterial pathogen Serratia marcescens that evolved in fluctuating temperature (daily variation between 24°C and 38°C, mean 31°C) outperforms the strains that evolved in constant temperature (31°C). The growth advantage was also evident in novel environments in the presence of parasitic viruses and predatory protozoans, but less clear in the presence of stressful chemicals. Adaptation to fluctuating temperature also led to reduced virulence in Drosophila melanogaster host, which suggests…

0106 biological sciencesEcologyRange (biology)Host (biology)fungiVirulenceThermal fluctuationsBiology010603 evolutionary biology01 natural sciences010601 ecologyEnvironmental temperature13. Climate actionGeneticsAdaptationGeneral Agricultural and Biological SciencesEcology Evolution Behavior and SystematicsEvolution
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Within-host evolution decreases virulence in an opportunistic bacterial pathogen

2015

Abstract Background Pathogens evolve in a close antagonistic relationship with their hosts. The conventional theory proposes that evolution of virulence is highly dependent on the efficiency of direct host-to-host transmission. Many opportunistic pathogens, however, are not strictly dependent on the hosts due to their ability to reproduce in the free-living environment. Therefore it is likely that conflicting selection pressures for growth and survival outside versus within the host, rather than transmission potential, shape the evolution of virulence in opportunists. We tested the role of within-host selection in evolution of virulence by letting a pathogen Serratia marcescens db11 sequent…

EXPRESSIONPARASITESTRANSMISSIONAdaptation BiologicalVirulenceCOMPETITIONmedicine.disease_causeMicrobiology03 medical and health sciencesmedicineAnimalsSecretionPathogenSerratia marcescensIN-VIVOEcology Evolution Behavior and SystematicsCOOPERATION030304 developmental biologySERRATIA-MARCESCENSLife Cycle Stages0303 health sciencesVirulencebiology030306 microbiologyPseudomonas aeruginosaHost (biology)PSEUDOMONAS-AERUGINOSAvirulenssibiology.organism_classificationBiological EvolutionBacterial LoadDrosophila melanogastertaudinaiheuttajatINFECTIONSTRADE-OFFHost-Pathogen Interactions1181 Ecology evolutionary biologyhostsDrosophila melanogasterAdaptationBacteriaResearch ArticleBMC Evolutionary Biology
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Pulsed-Resource Dynamics Constrain the Evolution of Predator-Prey Interactions

2011

Although temporal variability in the physical environment plays a major role in population fluctuations, little is known about how it drives the ecological and evolutionary dynamics of species interactions. We studied experimentally how extrinsic resource pulses affect evolutionary and ecological dynamics between the prey bacterium Serratia marcescens and the predatory protozoan Tetrahymena thermophila. Predation increased the frequency of defensive, nonpigmented prey types, which bore competitive costs in terms of reduced maximum growth rate, most in a constant-resource environment. Furthermore, the predator densities of the pulsed-resource environment regularly fluctuated above and below …

Competitive BehaviorFood ChainTime Factorsmedia_common.quotation_subjectPopulation DynamicsPopulationAdaptation BiologicalEnvironmentBiologyTrade-offCompetition (biology)Tetrahymena thermophilaPredationAbundance (ecology)AnimalsSelection GeneticEvolutionary dynamicseducationPredatorEcosystemSerratia marcescensEcology Evolution Behavior and Systematicsmedia_commonPopulation Densityeducation.field_of_studyEcologyProdigiosinBiological EvolutionPhenotypeBiofilmsPredatory BehaviorbacteriaPrey switchingThe American Naturalist
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Nest mounds of red wood ants ( Formicaaquilonia ): hot spots for litter-dwelling earthworms

2017

A previously undocumented association between earthworms and red wood ants (Formicaaquilonia Yarr.) was found during an investigation of the influence of wood ants on the distribution and abundance of soil animals in boreal forest soil. Ant nest mounds and the surrounding soil of the ant territories were sampled. The ant nest mound surface (the uppermost 5-cm layer) harboured a much more abundant earthworm community than the surrounding soil; the biomass of the earthworms was about 7 times higher in the nests than in the soil. Dendrodrilusrubidus dominated the earthworm community in the nests, while in soils Dendrobaenaoctaedra was more abundant. Favorable temperature, moisture and pH (Ca c…

Mutualism (biology)Dendrodrilus rubidusAculeataNestbiologyEcologyEarthwormHymenopteraAnt colonybiology.organism_classificationEcology Evolution Behavior and SystematicsPredationOecologia
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Environmental noise and population dynamics of the ciliated protozoa Tetrahymena thermophila in aquatic microcosms

2003

Population theory predicts that the reddened environmental noise, especially in combination with high population growth rate, reddens population dynamics, increases population variability and strengthens environment–population correlation. We tested these predictions with axenic populations of ciliated protozoa Tetrahymena thermophila. Populations with low and high growth rate were cultured in a stable environment, and in environments with sublethal temperature fluctuations that had blue, white and red spectra (i.e. negatively autocorrelated, uncorrelated, or positively autocorrelated, respectively). Population size and biomass of individuals were determined at 3-h intervals for 18 days. Dy…

education.field_of_studyBiomass (ecology)biologyEcologyPopulation sizePopulationTetrahymenabiology.organism_classificationPopulation modelPopulation growthGrowth rateeducationMicrocosmEcology Evolution Behavior and SystematicsOikos
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Interactions between environmental variability and immigration rate control patterns of species diversity

2006

Abstract Theories focussing on local competition processes predict that species diversity is maximised with high-frequency environmental variability or alternatively with intermediate frequencies. The models coupling regional processes to local explanations of diversity patterns predict that the immigration rate from a regional species pool can strongly increase diversity. However, the interaction between local and regional processes in temporally fluctuating environment has received little attention. We explored in a simulation study how the patterns of species diversity are affected by the frequency spectrum of stochastic environmental variations and density independent immigration rate i…

0106 biological sciencesEcological nicheEcologyEcological Modelingmedia_common.quotation_subjectBiodiversitySpecies diversity15. Life on landBiology010603 evolutionary biology01 natural sciencesCompetition (biology)010601 ecologyIntermediate Disturbance HypothesisBiological dispersalGrowth ratehuman activitiesDiversity (business)media_commonEcological Modelling
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Rich resource environment of fish farms facilitates phenotypic variation and virulence in an opportunistic fish pathogen

2020

Phenotypic variation is suggested to facilitate the persistence of environmentally growing pathogens under environmental change. Here, we hypothesized that the intensive farming environment induces higher phenotypic variation in microbial pathogens than natural environment, because of high stochasticity for growth and stronger survival selection compared to the natural environment. We tested the hypothesis with an opportunistic fish pathogen Flavobacterium columnare isolated either from fish farms or from natural waters. We measured growth parameters of two morphotypes from all isolates in different resource concentrations and two temperatures relevant for the occurrence of disease epidemic…

GillLIFE-HISTORYFish farmingDIVERSITYZoologyVirulenceDISEASEColumnarisbakteerit03 medical and health sciencescolony typeCOLUMNARISGeneticsmedicinefish diseasesHETEROGENEITYPLASTICITYPARASITEmuuntelu (biologia)TEMPERATUREvesiviljely (kalatalous)PathogenEcology Evolution Behavior and Systematics030304 developmental biology0303 health sciencesbiology030306 microbiologyfungiphenotypic variationbacteriumkalatauditbiology.organism_classificationmedicine.diseaseEVOLUTIONtaudinaiheuttajatRhizoidaquaculture1181 Ecology evolutionary biologyFlavobacterium columnareGROWTHfenotyyppiAdaptationGeneral Agricultural and Biological Scienceskalanviljelylaitokset
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Protist predation can select for bacteria with lowered susceptibility to infection by lytic phages

2015

Background: Consumer-resource interactions constitute one of the most common types of interspecific antagonistic interaction. In natural communities, complex species interactions are likely to affect the outcomes of reciprocal co-evolution between consumers and their resource species. Individuals face multiple enemies simultaneously, and consequently they need to adapt to several different types of enemy pressures. In this study, we assessed how protist predation affects the susceptibility of bacterial populations to infection by viral parasites, and whether there is an associated cost of defence on the competitive ability of the bacteria. As a study system we used Serratia marcescens and i…

0106 biological sciencesDYNAMICSMultiple species interactionalkueliötPhage resistancePREYTrade-offmedicine.disease_cause01 natural sciencesBacteriophageDECREASED VIRULENCEBacteriophagesHETEROGENEITYPhage-host interactionSerratia marcescens2. Zero hungerGenetics0303 health scienceseducation.field_of_studybiologyTetrahymenaProtistProtistsBiological Evolution010601 ecologyLytic cycle1181 Ecology evolutionary biologyResearch ArticleAntagonistic co-evolutionVIRUSESPopulationRESISTANT MUTANTSPseudomonas fluorescensSerratiabakteriofagitMicrobiologyTetrahymena thermophilaMECHANISMS03 medical and health sciencesmedicineHost-parasite interactioneducationEcosystemEcology Evolution Behavior and Systematics030304 developmental biologyCOEVOLUTION15. Life on landbiology.organism_classificationEVOLUTIONMODELPseudomonas fluorescens SBW25Serratia marcescensBacteria
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Non-linear biological responses to disturbance: consequences on population dynamics

2003

Abstract We assessed how non-linear biological responses to environmental noise, or “noise filtering”, impact the spectra of density-dependent population dynamics, and the correlation between noise and population dynamics. The noise was assumed to affect population growth rate in a discrete-time population model by Hassell [J. Anim. Ecol. 44 (1975) 283–295] where the population growth rate was linked to the environment with an optimum type filter. When compared to unfiltered noise, the filtered noise can distort the stationary distribution of population values. The optimum type filter can make cyclic population dynamics more regular and low population values can become more frequent or rare…

0106 biological scienceseducation.field_of_study010604 marine biology & hydrobiologyEcological ModelingPopulation sizePopulationFilter (signal processing)010603 evolutionary biology01 natural sciencesPopulation densityDensity dependencePopulation modelStatisticsQuantitative Biology::Populations and EvolutionPopulation growtheducationEnvironmental noiseMathematicsEcological Modelling
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Coincidental loss of bacterial virulence in multi-enemy microbial communities.

2014

The coincidental virulence evolution hypothesis suggests that outside-host selection, such as predation, parasitism and resource competition can indirectly affect the virulence of environmentally-growing bacterial pathogens. While there are some examples of coincidental environmental selection for virulence, it is also possible that the resource acquisition and enemy defence is selecting against it. To test these ideas we conducted an evolutionary experiment by exposing the opportunistic pathogen bacterium Serratia marcescens to the particle-feeding ciliate Tetrahymena thermophila, the surfacefeeding amoeba Acanthamoeba castellanii, and the lytic bacteriophage Semad11, in all possible combi…

Ecological selectionBacteriophageNatural SelectionBacteriophagesANTAGONISTIC COEVOLUTIONLISTERIA-MONOCYTOGENESSerratia marcescens1183 Plant biology microbiology virologyGeneticsSERRATIA-MARCESCENSAcanthamoeba castellanii0303 health sciencesMultidisciplinaryEcologybiologyQTetrahymenaRAcanthamoeba castellaniiMedicineResearch ArticleEvolutionary ProcessesVirulence FactorsAntagonistic CoevolutionScienceMicrobial ConsortiaeducationVirulenceMicrobiologyMicrobial EcologyMicrobiologyEvolution Molecular03 medical and health sciencesmulti-enemy microbial communitiesWater environment030304 developmental biologySTAPHYLOCOCCUS-AUREUSEvolutionary BiologyPSEUDOMONAS-AERUGINOSA VIRULENCE030306 microbiologybacterial virulenceDICTYOSTELIUM-DISCOIDEUMBiology and Life SciencesBacteriologybiology.organism_classificationOrganismal EvolutionArtificial SelectionTETRAHYMENA-THERMOPHILAEvolutionary EcologyMicrobial Evolutionta1181AMEBA ACANTHAMOEBA-CASTELLANIILEGIONELLA-PNEUMOPHILABacteriaMEDIA COMPOSITION INFLUENCESPLoS ONE
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Temporal variability in detritus resource maintains diversity of bacterial communities

2008

Competition theory generally predicts that diversity is maintained by temporal environmental fluctuations. One of the many suggested mechanisms for maintaining diversity in fluctuating environments is the gleaner-opportunist trade-off, whereby gleaner species have low threshold resource levels and low maximum growth rates in high resource concentration while opportunist species show opposite characteristics. We measured the growth rates of eight heterotrophic aquatic bacteria under different concentrations of chemically complex plant detritus resource. The growth rates revealed gleaner-opportunist trade-offs. The role of environmental variability in maintaining diversity was tested in a 28-…

0106 biological sciencesBiomass (ecology)DetritusResource (biology)Ecologymedia_common.quotation_subjectSpecies diversity15. Life on landBiology010603 evolutionary biology01 natural sciencesPopulation densityCompetition (biology)010601 ecologyDiversity indexMicrocosmEcology Evolution Behavior and SystematicsNature and Landscape Conservationmedia_commonActa Oecologica
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Composition and Trophic Structure of Detrital Food Web in Ant Nest Mounds of Formica aquilonia and in the Surrounding Forest Soil

1998

Community composition and food web structure of soil decomposer biota in relation to various habitat properties were compared between upper parts of red wood ant (Formica aquilonia) nest mounds and the adjacent forest soil. For a description of trophic structure of the decomposer community in the two habitats, soil decomposers were classified into 14 trophic groups. Classification of the taxa into three habitat preference categories resulted in a clear division of the fauna into either soil or nest specialists, relatively few taxa falling between these two groups. A large majority of the nest specialists belonged to a non-myrmecophilous soil decomposer fauna so far largely overlooked in stu…

biologyNestFormica rufaEcologyMicrofaunaSoil biologybiology.organism_classificationEcology Evolution Behavior and SystematicsDecomposerFood webFormica aquiloniaTrophic levelOikos
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Effects of patch number and dispersal patterns on population dynamics and synchrony.

2000

In this paper, we examine the effects of patch number and different dispersal patterns on dynamics of local populations and on the level of synchrony between them. Local population renewal is governed by the Ricker model and we also consider asymmetrical dispersal as well as the presence of environmental heterogeneity. Our results show that both population dynamics and the level of synchrony differ markedly between two and a larger number of local populations. For two patches different dispersal rules give very versatile dynamics. However, for a larger number of local populations the dynamics are similar irrespective of the dispersal rule. For example, for the parameter values yielding stab…

0106 biological sciencesStatistics and ProbabilityPopulationPopulation DynamicsBiology010603 evolutionary biology01 natural sciencesPopulation densityModels BiologicalGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesQuantitative Biology::Populations and EvolutionAnimalsLocal populationPopulation dynamicseducation030304 developmental biologyPopulation Density0303 health scienceseducation.field_of_studyGeneral Immunology and MicrobiologyEcologyApplied MathematicsHigh intensityDynamics (mechanics)General MedicineRicker modelModeling and SimulationBiological dispersalGeneral Agricultural and Biological SciencesJournal of theoretical biology
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Top-down effects of a lytic bacteriophage and protozoa on bacteria in aqueous and biofilm phases

2014

Lytic bacteriophages and protozoan predators are the major causes of bacterial mortality in natural microbial communities, which also makes them potential candidates for biological control of bacterial pathogens. However, little is known about the relative impact of bacteriophages and protozoa on the dynamics of bacterial biomass in aqueous and biofilm phases. Here, we studied the temporal and spatial dynamics of bacterial biomass in a microcosm experiment where opportunistic pathogenic bacteria Serratia marcescens was exposed to particle‐feeding ciliates, surface‐feeding amoebas, and lytic bacteriophages for 8 weeks, ca. 1300 generations. We found that ciliates were the most efficient enem…

BacterivoreMicrocosmlytic bacteriophageAquatic bacteriaeducationBiomassDefense evolutionmedicine.disease_causeTetrahymena thermophilaMicrobiologySerratia marcescens db11Bacteriophagemedicine14. Life underwatertop-down regulationEcology Evolution Behavior and SystematicsOriginal ResearchNature and Landscape ConservationAcanthamoeba castellaniiEcologybiologydefense evolutionaquatic bacteriata1183BiofilmPathogenic bacteriaSemad11biology.organism_classificationSerratia marcescensDb11Lytic bacteriophagemicrocosm13. Climate action1181 Ecology evolutionary biologyTop-down regulationProtozoata1181MicrocosmBacteriaEcology and Evolution
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Short-term effects of wood ants (Formica aquilonia Yarr.) on soil animal community structure

1999

Abstract Wood ants are known to affect the structure of invertebrate communities in tree canopies but it is not clear whether wood ants can affect the structure of soil animal communities. To isolate the direct effects of wood ants on soil fauna, I manipulated wood ant density in a 6-week mesocosm experiment by placing mesocosms (O 14 cm, height 13.5 cm) permeable to ants either on or outside the ant trails. The mesocosms contained litter, humus, and a diverse soil fauna typical of coniferous forest. I controlled earthworm species composition and biomasses by inoculating 470 mg fresh mass of epigeic lumbricid Dendrobaena octaedra (Sav.) or Dendrodrilus rubidus (Sav.) to the mesocosms. A 15-…

Dendrodrilus rubidusBiomass (ecology)EcologySoil biologyEarthwormSoil ScienceSoil classificationBiologyEpigealbiology.organism_classificationMicrobiologySoil mesofaunaHumusSoil Biology and Biochemistry
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Predation and resource fluctuations drive eco-evolutionary dynamics of a bacterial community

2012

Predation and temporal resource availability are among the most important factors determining prey community dynamics and composition. Both factors have been shown to affect prey diversity, but less is known about their interactive effects, especially in rapidly evolving prey communities. In a laboratory microcosm experiment, we manipulated the presence of the predatory protozoan Tetrahymena thermophila and the temporal patterns in the availability of resources for a bacterial prey community. We found that both predation and temporal fluctuations in prey resources resulted in a more even prey community, and these factors also interacted so that the effect of predation was only seen in a flu…

0106 biological sciencesResource (biology)Eco evolutionaryResistance (ecology)EcologyCommunity structureBiology010603 evolutionary biology01 natural sciencesPredation010601 ecologyGrazingSpecies evennessta118114. Life underwaterMicrocosmEcology Evolution Behavior and SystematicsNature and Landscape ConservationActa Oecologica
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Plant effects on the soil community: A microcosm experiment

1999

Abstract An experiment was carried out in microcosms for testing the hypothesis that a higher level of primary production should maintain a decomposer community with higher biomass and activity. Microcosms with coniferous forest humus and a diverse microbial and faunal community were divided into three sets: (1) control without plants, (2) with birch seedlings in full illumination, and (3) with birch seedlings, shaded to reduce the net primary production. During 16 weeks of incubation at +16 °C, no treatment effects were found in numbers or biomass of taxonomic or functional groups of soil organisms, nor in the system respiration in darkness. The community structure of the shaded systems di…

Biomass (ecology)Community structureSoil ScienceBiologyMicrobiologyHumusDecomposerAgronomyInsect ScienceRespirationBotanyMicrocosmIncubationOrganic contentEuropean Journal of Soil Biology
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Population- and ecosystem-level effects of predation on microbial-feeding nematodes.

2017

We studied the role of nematode predation in the functioning of detrital food webs assembled in microcosms. The microcosms contained defaunated humus and litter materials, a diverse microbial community with bacteria, fungi and protozoa, and a birch (Betula pendula) seedling infected with mycorrhizal fungi. Different levels of top-down control upon microbivorous nematodes were set up by assembling food webs either without predators, or in combinations with a specialist and a non-specialist predatory mite (Mesostigmata). The nematode community was composed of either (1) three species of bacterivorous, or (2) three species of fungivorous nematodes or (3) both groups together. After two growing…

Biomass (ecology)education.field_of_studyPopulationBiologyFood webAgronomyProductivity (ecology)Microbial population biologyBotanyFungivoreMicrocosmeducationEcology Evolution Behavior and SystematicsTrophic levelOecologia
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Pulsed-resource dynamics increase the asymmetry of antagonistic coevolution between a predatory protist and a prey bacterium

2011

Temporal resource fluctuations could affect the strength of antagonistic coevolution through population dynamics and costs of adaptation. We studied this by coevolving the prey bacterium Serratia marcescens with the predatory protozoa Tetrahymena thermophila in constant and pulsed-resource environments for approximately 1300 prey generations. Consistent with arms race theory, the prey evolved to be more defended, whereas the predator evolved to be more efficient in consuming the bacteria. Coevolutionary adaptations were costly in terms of reduced prey growth in resource-limited conditions and less efficient predator growth on nonliving resource medium. However, no differences in mean coevol…

0106 biological scienceseducation.field_of_studyExperimental evolutionbiologyEcologyAntagonistic CoevolutionPopulationTetrahymenabiology.organism_classificationTrade-off010603 evolutionary biology01 natural sciencesPredation010601 ecologyAdaptationeducationPredatorEcology Evolution Behavior and SystematicsJournal of Evolutionary Biology
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Predation on Multiple Trophic Levels Shapes the Evolution of Pathogen Virulence

2009

The pathogen virulence is traditionally thought to co-evolve as a result of reciprocal selection with its host organism. In natural communities, pathogens and hosts are typically embedded within a web of interactions with other species, which could affect indirectly the pathogen virulence and host immunity through trade-offs. Here we show that selection by predation can affect both pathogen virulence and host immune defence. Exposing opportunistic bacterial pathogen Serratia marcescens to predation by protozoan Tetrahymena thermophila decreased its virulence when measured as host moth Parasemia plantaginis survival. This was probably because the bacterial anti-predatory traits were traded o…

0106 biological scienceslcsh:MedicineVirulenceZoologyEvolutionary Biology/Evolutionary Ecology010603 evolutionary biology01 natural sciencesPredationMicrobiologyTetrahymena thermophila03 medical and health sciencesParasemia plantaginisEcology/Evolutionary Ecologylcsh:SciencePathogenSerratia marcescensTrophic level0303 health sciencesLarvaMultidisciplinarybiologyVirulence030306 microbiologyHost (biology)lcsh:R15. Life on landbiology.organism_classificationEvolutionary Biology/Microbial Evolution and GenomicsSerratia marcescensHost-Pathogen Interactionslcsh:QResearch ArticlePLoS ONE
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Resource availability and competition shape the evolution of survival and growth ability in a bacterial community

2013

Resource availability is one of the main factors determining the ecological dynamics of populations or species. Fluctuations in resource availability can increase or decrease the intensity of resource competition. Resource availability and competition can also cause evolutionary changes in life-history traits. We studied how community structure and resource fluctuations affect the evolution of fitness related traits using a two-species bacterial model system. Replicated populations of Serratia marcescens (copiotroph) and Novosophingobium capsulatum (oligotroph) were reared alone or together in environments with intergenerational, pulsed resource renewal. The comparison of ancestral and evol…

0106 biological sciencesecological nichesBACTERIAL BIOFILMSResource (biology)media_common.quotation_subjectScienceAdaptation BiologicalBiologyco-evolutionEnvironment010603 evolutionary biology01 natural sciencesCompetition (biology)Bacterial evolution03 medical and health sciencesSpecies SpecificityAdaptive radiationCopiotrophSerratia marcescens030304 developmental biologymedia_commonEcological niche0303 health sciencesMultidisciplinaryEcologyMicrobiotaQCommunity structureRInterspecific competitionbiology.organism_classificationBiological EvolutionSurvival AnalysisSphingomonadaceaeSerratia marcescens1181 Ecology evolutionary biologyLinear ModelsMedicineMicrobial Interactionsta1181competitionResearch ArticlePLOS ONE
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Life History Trade-Offs and Relaxed Selection Can Decrease Bacterial Virulence in Environmental Reservoirs

2012

Pathogen virulence is usually thought to evolve in reciprocal selection with the host. While this might be true for obligate pathogens, the life histories of opportunistic pathogens typically alternate between within-host and outside-host environments during the infection-transmission cycle. As a result, opportunistic pathogens are likely to experience conflicting selection pressures across different environments, and this could affect their virulence through life-history trait correlations. We studied these correlations experimentally by exposing an opportunistic bacterial pathogen Serratia marcescens to its natural protist predator Tetrahymena thermophila for 13 weeks, after which we meas…

Food ChainEvolutionary ProcessesScienceVirulenceParallel EvolutionPathogenesisEnvironmentBiologyForms of EvolutionMicrobiologyDivergent EvolutionTetrahymena thermophilaMicrobial Ecology03 medical and health sciencesNatural Selectionexperimental evolutionSelection GeneticAdaptationBiologyMicrobial PathogensPathogenSerratia marcescensSelection (genetic algorithm)030304 developmental biologyGeneticsEvolutionary Biology0303 health sciencesMultidisciplinaryEcologyObligate030306 microbiologyHost (biology)Mechanism (biology)QRAdaptation PhysiologicalBiological EvolutionBacterial PathogensvirulenceEvolutionary EcologyMicrobial EvolutionBacterial pigmentMedicineta1181AdaptationResearch ArticlePLoS ONE
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EVOLUTION OF HSP90 EXPRESSION IN TETRAHYMENA THERMOPHILA (PROTOZOA, CILIATA) POPULATIONS EXPOSED TO THERMALLY VARIABLE ENVIRONMENTS

2004

Evolutionary consequences of thermally varying environments were studied in the ciliated protozoan Tetrahymena thermophila. Replicated lines were propagated for 60 days, a maximum of 500 generations, in stable, slowly fluctuating (red spectrum), and rapidly fluctuating (blue spectrum) temperatures. The red and blue fluctuations had a dominant period length of 15 days and two hours, respectively. The mean temperature of all time series was 25 degrees C and the fluctuating temperatures had the same minimum (10 degrees C), maximum (40 degrees C), and variance. During the experiment, population sizes and biomasses were monitored at three-day intervals. After the experiment, carrying capacity an…

0106 biological sciencesTime FactorsPopulationGene ExpressionEnvironment010603 evolutionary biology01 natural sciencesTetrahymena thermophila03 medical and health sciencesAnimal scienceBotanyGeneticsAnimalsCarrying capacityHSP90 Heat-Shock ProteinsGrowth rateeducationEcology Evolution Behavior and Systematics030304 developmental biologyAnalysis of Variance0303 health sciencesExperimental evolutioneducation.field_of_studybiologyCiliataTemperatureTetrahymenabiology.organism_classificationBiological EvolutionHsp9013. Climate actionbiology.proteinProtozoaGeneral Agricultural and Biological SciencesEvolution
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Invasion Ability and Disease Dynamics of Environmentally Growing Opportunistic Pathogens under Outside-Host Competition

2014

Most theories of the evolution of virulence concentrate on obligatory host-pathogen relationship. Yet, many pathogens replicate in the environment outside-host where they compete with non-pathogenic forms. Thus, replication and competition in the outside-host environment may have profound influence on the evolution of virulence and disease dynamics. These environmentally growing opportunistic pathogens are also a logical step towards obligatory pathogenicity. Efficient treatment methods against these diseases, such as columnaris disease in fishes, are lacking because of their opportunist nature. We present a novel epidemiological model in which replication and competition in the outside-hos…

Bacterial Diseases0106 biological sciencesPopulation ModelingDisease01 natural sciencesTheoretical EcologyMedicine and Health SciencesPathogenPOPULATIONmedia_common0303 health scienceseducation.field_of_studyPREDATIONMultidisciplinaryEcologyTransmission (medicine)EcologySimulation and ModelingQRCHANNEL CATFISHEVOLUTIONARY DYNAMICSCOMMUNITYInfectious DiseasesHost-Pathogen Interactions1181 Ecology evolutionary biologyMedicineAlgorithmsResearch ArticleTRANSMISSIONSciencemedia_common.quotation_subjecteducationPopulationVirulenceOpportunistic InfectionsBiologyResearch and Analysis Methods010603 evolutionary biologyCompetition (biology)03 medical and health sciences14. Life underwaterParasite EvolutioneducationEvolutionary dynamicsta413030304 developmental biologyEvolutionary BiologyMathematical ModelingSTABILITYMORTALITYEcology and Environmental SciencesBiology and Life SciencesComputational BiologyFLAVOBACTERIUM-COLUMNAREOutbreakModels TheoreticalEmerging Infectious DiseasesEvolutionary Ecologyta1181VIRULENCEParasitologyInfectious Disease ModelingPLoS ONE
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High temperature and bacteriophages can indirectly select for bacterial pathogenicity in environmental reservoirs

2010

The coincidental evolution hypothesis predicts that traits connected to bacterial pathogenicity could be indirectly selected outside the host as a correlated response to abiotic environmental conditions or different biotic species interactions. To investigate this, an opportunistic bacterial pathogen, Serratia marcescens, was cultured in the absence and presence of the lytic bacteriophage PPV (Podoviridae) at 25°C and 37°C for four weeks (N = 5). At the end, we measured changes in bacterial phage-resistance and potential virulence traits, and determined the pathogenicity of all bacterial selection lines in the Parasemia plantaginis insect model in vivo. Selection at 37°C increased bacterial…

Disease reservoirHot TemperatureMovementlcsh:MedicineVirulenceMothsMicrobiologyMicrobial EcologyMicrobiologyBacteriophage03 medical and health sciencesEnvironmental MicrobiologyAnimalslcsh:ScienceBiologyPathogenSerratia marcescens1183 Plant biology microbiology virologyDisease Reservoirs030304 developmental biologyAbiotic componentEvolutionary Biology0303 health sciencesMultidisciplinaryBiotic componentEcologybiology030306 microbiologylcsh:RPodoviridaebiology.organism_classificationBiological EvolutionSurvival AnalysisBacterial PathogensLytic cycleEvolutionary EcologyLarvaHost-Pathogen InteractionsMicrobial Evolutionlcsh:QBacteriaResearch Article
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Different food sources elicit fast changes to bacterial virulence

2016

Environmentally transmitted, opportunistic bacterial pathogens have a life cycle that alternates between hosts and environmental reservoirs. Resources are often scarce and fluctuating in the outside-host environment, whereas overcoming the host immune system could allow pathogens to establish a new, resource abundant and stable niche within the host. We tested if short-term exposure to different outside-host resource types and concentrations affect Serratia marcescens —(bacterium)'s virulence in Galleria mellonella (moth). As expected, virulence was mostly dictated by the bacterial dose, but we also found a clear increase in virulence when the bacterium had inhabited a low (versus high) re…

0301 basic medicine030106 microbiologyNicheAdaptation BiologicalVirulenceEnvironmentMothsSerratiaMicrobiology03 medical and health sciencesAnimalsPathogenSerratia marcescensEvolutionary BiologyLife Cycle StagesVirulencebiologyHost (biology)fungita1183Outbreakbiology.organism_classificationAgricultural and Biological Sciences (miscellaneous)Bacterial LoadGalleria mellonellaeutrophicationLarvaplasticityHost-Pathogen Interactionsta1181General Agricultural and Biological SciencesresourcesBacteriavirulence pathogenBiology Letters
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How does environmental variation translate into biological processes?

2001

Birth and death rates, as so many other biological processes, are usually not linearly related to environmental variation. Common examples of non-linear response forms include unimodal ‘‘optimum-type’’ responses and various saturating responses. These responses filter the signal coming from the environment to a corresponding biological process. We explored how different types of environmental signal may be transformed to a biological process. We were interested in the effect of the filter on modulation of (1) the variance of the signal, on (2) the variance-covariance structure between the signal and the filtered signal, and on (3) the match between the power spectra of the signal and the fi…

Physicseducation.field_of_studyColors of noiseModulationPopulationSpectral densityFilter (signal processing)Biological systemeducationSignalEcology Evolution Behavior and SystematicsBirth–death processPower (physics)Oikos
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Outside-host growth of pathogens attenuates epidemiological outbreaks.

2012

Opportunist saprotrophic pathogens differ from obligatory pathogens due to their capability in host-independent growth in environmental reservoirs. Thus, the outside-host environment potentially influences host-pathogen dynamics. Despite the socio-economical importance of these pathogens, theory on their dynamics is practically missing. We analyzed a novel epidemiological model that couples outside-host density-dependent growth to host-pathogen dynamics. Parameterization was based on columnaris disease, a major hazard in fresh water fish farms caused by saprotrophic Flavobacterium columnare. Stability analysis and numerical simulations revealed that the outside-host growth maintains high pr…

Fresh water fishEpidemiologySciencePopulation DynamicsFisheriesPopulation ModelingFresh WaterAquacultureFlavobacteriumModels BiologicalMicrobiologyInfectious Disease EpidemiologyDisease Outbreaks03 medical and health sciencesFish DiseasesFlavobacteriaceae InfectionsAnimalsComputer SimulationDisease DynamicsBiology030304 developmental biologyDisease Reservoirs0303 health sciencesMultidisciplinarybiologyPopulation Biology030306 microbiologyEcologyHost (biology)QColumnaris diseaseRFishesOutbreakComputational BiologyAgriculturebiology.organism_classificationHost-Pathogen InteractionInfectious DiseasesFlavobacterium columnareHost-Pathogen InteractionsMedicineFish FarmingInfectious Disease ModelingResearch ArticlePloS one
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Outside-host phage therapy as a biological control against environmental infectious diseases

2018

Background Environmentally growing pathogens present an increasing threat for human health, wildlife and food production. Treating the hosts with antibiotics or parasitic bacteriophages fail to eliminate diseases that grow also in the outside-host environment. However, bacteriophages could be utilized to suppress the pathogen population sizes in the outside-host environment in order to prevent disease outbreaks. Here, we introduce a novel epidemiological model to assess how the phage infections of the bacterial pathogens affect epidemiological dynamics of the environmentally growing pathogens. We assess whether the phage therapy in the outside-host environment could be utilized as a biologi…

SI model0301 basic medicinevirusesmedicine.medical_treatmentVIBRIO-CHOLERAEDIVERSITYBacteriophageColumnaris diseasebacteriophageBacteriophageslcsh:QH301-705.5PathogenPOPULATION2. Zero hungerInfectivityeducation.field_of_studyPREDATIONEnvironmental opportunistCHANNEL CATFISHEVOLUTIONARY DYNAMICShost-parasite interactionflavobacteriumModeling and Simulationlcsh:R858-859.7biologinen torjuntaPhage therapy030106 microbiologyPopulationenvironmental opportunistVirulenceHealth InformaticsBiologylcsh:Computer applications to medicine. Medical informaticsinfektiotCommunicable DiseasesFlavobacteriumbakteriofagit03 medical and health sciencesmedicineAnimalsHumansPhage TherapyHost-parasite interactionBacteriophageeducationMORTALITYResearchFLAVOBACTERIUM-COLUMNAREOutbreakEnvironmental Exposurekalatauditbiology.organism_classificationVirologyfagiterapia030104 developmental biologylcsh:Biology (General)Infectious disease (medical specialty)BACTERIOPHAGE THERAPYVIRULENCE1182 Biochemistry cell and molecular biologyTheoretical Biology and Medical Modelling
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Interactive effects between diet and genotypes of host and pathogen define the severity of infection

2012

Host resistance and parasite virulence are influenced by multiple interacting factors in complex natural communities. Yet, these interactive effects are seldom studied concurrently, resulting in poor understanding of host-pathogen-environment dynamics. Here, we investigated how the level of opportunist pathogen virulence, strength of host immunity and the host condition manipulated via diet affect the survival of wood tiger moth Parasemia plantaginis (Arctidae). Larvae from “low cuticular melanin” and “high cuticular melanin” (considered as low and high pathogen resistance, respectively) selection lines were infected with moderately and highly virulent bacteria strains of Serratia marcescen…

0106 biological sciencesGenotype-environment interactionVirulenceLactucaBiology010603 evolutionary biology01 natural sciencesMicrobiologyMelanin03 medical and health sciencesImmunityParasemia plantaginisBotanyPathogenEcology Evolution Behavior and SystematicsSerratia marcescens030304 developmental biologyNature and Landscape ConservationOriginal Research11832 Microbiology and virology0303 health sciencesimmunokompetenssilleimmunocompetenceEcologyintegumentary systemHost (biology)fungivirulenssiPlantago majorbiology.organism_classificationvirulenceSerratia marcescensta1181Parasemia plantaginissense organsGenotyyppi-ympäristö vuorovaikutusEcology and Evolution
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Phage-driven loss of virulence in a fish pathogenic bacterium

2012

Parasites provide a selective pressure during the evolution of their hosts, and mediate a range of effects on ecological communities. Due to their short generation time, host-parasite interactions may also drive the virulence of opportunistic bacteria. This is especially relevant in systems where high densities of hosts and parasites on different trophic levels (e.g. vertebrate hosts, their bacterial pathogens, and virus parasitizing bacteria) co-exist. In farmed salmonid fingerlings, Flavobacterium columnare is an emerging pathogen, and phage that infect F. columnare have been isolated. However, the impact of these phage on their host bacterium is not well understood. To study this, four s…

Gliding motilityPathogenesisAquacultureFish DiseasesFlavobacteriaceae InfectionsSalmonphageBacteriophagesPathogenZebrafishGliding motility0303 health sciencesEvolutionary TheoryMultidisciplinarybiologyEcologyVirulenceQRFishesvirulenssiAnimal ModelsBiological EvolutionBacterial PathogensHost-Pathogen InteractionLytic cycleMedicineResearch ArticleScienceVirulenceMicrobiologyFlavobacteriumMicrobiologyMicrobial EcologyHost-Parasite Interactions03 medical and health sciencesModel OrganismsVirologyAnimals14. Life underwaterBiology030304 developmental biologyEvolutionary Biology030306 microbiologyHost (biology)ta1182biology.organism_classificationEvolutionary Ecologyphage resistanceFlavobacterium columnareVirulence Factors and Mechanismsta1181BacteriaFlavobacteriumopportunismi
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Outside-host predation as a biological control against an environmental opportunist disease

2017

Abstract Environmentally growing opportunist pathogens are a common threat to human health and food production. Due to environmental growth of the pathogen, these diseases are difficult to control with disinfectants and antibiotics. Thus, there is a need for sustainable and effective control methods against environmentally growing opportunist diseases. Predation is often a major limiting factor in the outside host environment. Here we propose that it could be used in the biological control of these diseases. We introduce a novel epidemiological model for environmentally growing opportunists combining pathogen growth within-host (SI model) and outside-host into classical predator-prey model.…

2. Zero hunger0301 basic medicineSI modeleducation.field_of_studyHost (biology)Transmission (medicine)EcologyEcological ModelingPopulationBiological pest controlOutbreakenvironmental opportunistDiseaseBiologyPredation03 medical and health sciences030104 developmental biologyflavobacteriumcolumnaris diseaseta1181predator-prey modelepidemiologyEvolutionary dynamicseducationEcological Modelling
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Adaptation to fluctuations in temperature by nine species of bacteria

2018

Rapid environmental fluctuations are ubiquitous in the wild, yet majority of experimental studies mostly consider effects of slow fluctuations on organism. To test the evolutionary consequences of fast fluctuations, we conducted nine independent experimental evolution experiments with bacteria. Experimental conditions were same for all species, and we allowed them to evolve either in fluctuating temperature alternating rapidly between 20°C and 40°C or at constant 30°C temperature. After experimental evolution, we tested the performance of the clones in both rapid fluctuation and in constant environments (20°C, 30°C and 40°C). Results from experiments on these nine species were combined meta…

TEMPERATURE FLUCTUATIONympäristöevoluutiobiologiavaikutukseteliöttemperature fluctuationSPECIALISTSTHERMAL PERFORMANCE CURVESbakteerittolerance curveexperimental evolutionsopeutuminenCLIMATE-CHANGEolosuhteetEXPERIMENTAL EVOLUTIONTOLERANCE CURVETEMPORALLY VARYING ENVIRONMENTREACTION NORMDROSOPHILAreaction normESCHERICHIA-COLI1181 Ecology evolutionary biologyPOPULATIONStoleranssitlämpötilaSENSITIVITYGENERALISTS
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Additional file 2: of Outside-host phage therapy as a biological control against environmental infectious diseases

2018

Equilibrium population densities and the Jacobian matrices for phage therapy model (1)â (6). Local stability analysis of the P-S-I submodel at S=Iâ =â 0 in the absence of recovery. (DOCX 30 kb)

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Data from: A mechanistic underpinning for sigmoid dose-dependent infection

2016

Theoretical models of environmentally transmitted diseases often assume that transmission is a constant process, which scales linearly with pathogen dose. Here we question the applicability of such an assumption and propose a sigmoidal form for the pathogens infectivity response. In our formulation, this response arises under two assumptions: 1) multiple invasion events are required for a successful pathogen infection and 2) the host invasion state is reversible. The first assumption reduces pathogen infection rates at low pathogen doses, while the second assumption, due to host immune function, leads to a saturating infection rate at high doses. The derived pathogen dose:infection rate -re…

medicine and health careepidemiological modellingGalleria mellonellaenvironmental transmissionMedicinepathogen transmissionLife sciencesSerratia marcescens
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Data from: Fluctuating temperature leads to evolution of thermal generalism and preadaptation to novel environments

2013

Environmental fluctuations can select for generalism, which is also hypothesized to increase organisms’ ability to invade novel environments. Here, we show that across a range of temperatures, opportunistic bacterial pathogen Serratia marcescens that evolved in fluctuating temperature (daily variation between 24°C and 38°C, mean 31°C) outperforms the strains that evolved in constant temperature (31°C). The growth advantage was also evident in novel environments in the presence of parasitic viruses and predatory protozoans, but less clear in the presence of stressful chemicals. Adaptation to fluctuating temperature also led to reduced virulence in Drosophila melanogaster host, which suggests…

medicine and health carefungiMedicinePodoviridaeLife sciencesSerratia marcescensTetrahymena thermophilaSelection - Experimental
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Additional file 3: of Outside-host phage therapy as a biological control against environmental infectious diseases

2018

Figure S2 Local stability analysis for susceptible host, infected host, pathogen and bacteriophage dynamics (S-I-P-F) when the phage transmission and release rate are varied (10− 9 0 is locally stable for high values of Λ F and β F (blue area). The coexistence equilibrium does not exist for lower values of when Λ F and β F (yellow area). In this case S and I become asymptotically extinct. Pathogen P always survives and even coexists with the phage F in the absence of the host S. The parameter values used are shown in Table 1. (TIF 2096 kb)

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Data from: Different food sources elicit fast changes to bacterial virulence

2016

Environmentally transmitted, opportunistic bacterial pathogens have a life cycle that alternates between hosts and environmental reservoirs. Resources are often scarce and fluctuating in the outside-host environment, whereas overcoming the host immune system could allow pathogens to establish a new, resource abundant and stable niche within the host. We tested if shortterm exposure to different outside-host resource types and concentrations affect Serratia marcescens—(bacterium)’s virulence in Galleria mellonella (moth). As expected, virulence was mostly dictated by the bacterial dose, but we also found a clear increase in virulence when the bacterium had inhabited a low (versus high) resou…

medicine and health carefungiMedicineLife sciences
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Data from: Top-down effects of a lytic bacteriophage and protozoa on bacteria in aqueous and biofilm phases

2015

Lytic bacteriophages and protozoan predators are the major causes of bacterial mortality in natural microbial communities, which also makes them potential candidates for biological control of bacterial pathogens. However, little is known about the relative impact of bacteriophages and protozoa on the dynamics of bacterial biomass in aqueous and biofilm phases. Here, we studied the temporal and spatial dynamics of bacterial biomass in a microcosm experiment where opportunistic pathogenic bacteria Serratia marcescens was exposed to particle-feeding ciliates, surface-feeding amoebas, and lytic bacteriophages for 8 weeks, ca. 1300 generations. We found that ciliates were the most efficient enem…

medicine and health careMedicineLife sciences
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Additional file 4: of Outside-host phage therapy as a biological control against environmental infectious diseases

2018

Figure S3 Time dynamics of pathogen, susceptible, infected host and bacteriophage dynamics (S-I-P-F) when the phage transmission and release rate are high (β F = 10− 3 and Λ F = 100). X-axis shows time in days and y-axis the population density. The pathogen population decreases close to extinction almost immediately, while there is a delay of approximately 47 days for the elimination of the disease and more than 50 days for decrease of the phage population close to extinction. The parameter values used are shown in Table 1. (TIF 2818 kb)

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Additional file 1: of Outside-host phage therapy as a biological control against environmental infectious diseases

2018

Figure S1 Time dynamics of pathogen, susceptible and infected host dynamics (S-I-P) in the absence of viral infection by bacteriophages and competition between the phage-resistant bacteria and the pathogen. X-axis and y-axis show time in days and the population density, respectively. Parameter values used are given in Table 1. In the absence of bacteriophages and phage-resistant bacteria, the pathogen (P), drives the susceptible host quickly extinct after which the infected host population goes extinct as well and the pathogen population stabilizes to grow saprothrophically in the absence of susceptible hosts. (TIF 2383 kb)

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High Temperature and Bacteriophages Can Indirectly Select for Bacterial Pathogenicity in Environmental Reservoirs

2011

The coincidental evolution hypothesis predicts that traits connected to bacterial pathogenicity could be indirectly selected outside the host as a correlated response to abiotic environmental conditions or different biotic species interactions. To investigate this, an opportunistic bacterial pathogen, Serratia marcescens, was cultured in the absence and presence of the lytic bacteriophage PPV (Podoviridae) at 25uC and 37uC for four weeks (N = 5). At the end, we measured changes in bacterial phage-resistance and potential virulence traits, and determined the pathogenicity of all bacterial selection lines in the Parasemia plantaginis insect model in vivo. Selection at 37uC increased bacterial…

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Predation on Multiple Trophic Levels Shapes the Evolution of Pathogen Virulence

2009

The pathogen virulence is traditionally thought to co-evolve as a result of reciprocal selection with its host organism. In natural communities, pathogens and hosts are typically embedded within a web of interactions with other species, which could affect indirectly the pathogen virulence and host immunity through trade-offs. Here we show that selection by predation can affect both pathogen virulence and host immune defence. Exposing opportunistic bacterial pathogen Serratia marcescens to predation by protozoan Tetrahymena thermophila decreased its virulence when measured as host moth Parasemia plantaginis survival. This was probably because the bacterial anti-predatory traits were traded o…

peto-saalissuhdeallokaatiokustannusevoluutiovirulenssiParasemia plantaginisimmuniteettiSerratia marcescensTetrahymena thermophila
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