0000000001299152

AUTHOR

Edvards Liepinsh

showing 25 related works from this author

The death-domain fold of the ASC PYRIN domain, presenting a basis for PYRIN/PYRIN recognition.

2003

The PYRIN domain is a conserved sequence motif identified in more than 20 human proteins with putative functions in apoptotic and inflammatory signalling pathways. The three-dimensional structure of the PYRIN domain from human ASC was determined by NMR spectroscopy. The structure determination reveals close structural similarity to death domains, death effector domains, and caspase activation and recruitment domains, although the structural alignment with these other members of the death-domain superfamily differs from previously predicted amino acid sequence alignments. Two highly positively and negatively charged surfaces in the PYRIN domain of ASC result in a strong electrostatic dipole …

Models MolecularProtein FoldingMagnetic Resonance SpectroscopyCARD Signaling Adaptor ProteinsProtein ConformationProtein domainMolecular Sequence DataStatic ElectricityBiologyPyrin domainProtein Structure SecondaryConserved sequenceProtein structureStructural BiologyAnimalsHumansAmino Acid SequenceCloning MolecularMolecular BiologyPeptide sequenceZebrafishDeath domainGeneticsModels StatisticalSequence Homology Amino AcidProteinsPyrinZebrafish ProteinsCell biologyProtein Structure TertiaryCARD Signaling Adaptor ProteinsCytoskeletal ProteinsSpectrometry Mass Matrix-Assisted Laser Desorption-IonizationProtein foldingProtein BindingSignal TransductionJournal of molecular biology
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Solution Structure of the R3H Domain from Human Sμbp-2

2003

The R3H domain is a conserved sequence motif, identified in over 100 proteins, that is thought to be involved in polynucleotide-binding, including DNA, RNA and single-stranded DNA. In this work the 3D structure of the R3H domain from human Smubp-2 was determined by NMR spectroscopy. It is the first 3D structure determination of an R3H domain. The fold presents a small motif, consisting of a three-stranded antiparallel beta-sheet and two alpha-helices, which is related to the structures of the YhhP protein and the C-terminal domain of the translational initiation factor IF3. The similarities are non-trivial, as the amino acid identities are below 10%. Three conserved basic residues cluster o…

Models MolecularEGF-like domainMolecular Sequence DataProtein domainProkaryotic Initiation Factor-3Immunoglobulin domainStructure-Activity RelationshipBacterial ProteinsStructural BiologyEVH1 domainHumansAmino Acid SequenceB3 domainNuclear Magnetic Resonance BiomolecularMolecular BiologyChemistryEscherichia coli ProteinsDHR1 domainProtein Structure TertiaryDNA-Binding ProteinsSolutionsCrystallographyCyclic nucleotide-binding domainSequence AlignmentTranscription FactorsBinding domainJournal of Molecular Biology
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Synthesis, spectroscopic and conformational analysis of 1,4-dihydroisonicotinic acid derivatives

2014

Abstract Structural and conformational properties of 1,4-dihydroisonicotinic acid derivatives, characterized by ester, ketone or cyano functions at positions 3 and 5 in solid and liquid states have been investigated by X-ray analysis and nuclear magnetic resonance and supported by quantum chemical calculations. The dihydropyridine ring in each of the compounds exists in flattened boat-type conformation. The observed ring distortions around the C(4) and N(1) atoms are interrelated. The substituent at N(1) has great influence on nitrogen atom pyramidality. The 1H, 13C and 15N NMR chemical shifts and coupling constants are discussed in terms of their relationship to structural features such as…

Coupling constantchemistry.chemical_classificationKetoneChemical shiftOrganic ChemistrySubstituentConjugated systemRing (chemistry)Analytical ChemistryInorganic Chemistrychemistry.chemical_compoundDelocalized electronchemistryComputational chemistryLone pairSpectroscopyJournal of Molecular Structure
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Lunasin is a redox sensitive intrinsically disordered peptide with two transiently populated α-helical regions.

2016

Lunasin is a 43 amino acid peptide with anti-cancer, antioxidant, anti-inflammatory and cholesterol-lowering properties. Although the mechanism of action of lunasin has been characterized to some extent, its exact three-dimensional structure as well as the function of the N-terminal sequence remains unknown. We established a novel method for the production of recombinant lunasin that allows efficient isotope labeling for NMR studies. Initial studies showed that lunasin can exist in a reduced or oxidized state with an intramolecular disulfide bond depending on solution conditions. The structure of both forms of the peptide at pH 3.5 and 6.5 was characterized by CD spectroscopy and multidimen…

0301 basic medicineProtein Conformation alpha-HelicalCircular dichroismPhysiologyBeta sheetPeptideIntrinsically disordered proteinsBiochemistryLunasinAntioxidantsHistones03 medical and health sciencesCellular and Molecular Neuroscience0302 clinical medicineEndocrinologyNeoplasmsAnticarcinogenic AgentsHumansAmino Acid SequenceDisulfidesProtein secondary structureNuclear Magnetic Resonance BiomolecularPlant Proteinschemistry.chemical_classificationChemistryAcetylationNuclear magnetic resonance spectroscopyIntrinsically Disordered Proteins030104 developmental biologyBiochemistry030220 oncology & carcinogenesisBiophysicsSoybean ProteinsPeptidesOxidation-ReductionFunction (biology)Peptides
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nmr structure of the pyrin domain of human asc

2022

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CCDC 907700: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal SystemCrystal StructureCell Parameters3-Acetyl-5-(methoxycarbonyl)-26-dimethyl-14-dihydropyridine-4-carboxylic acidExperimental 3D Coordinates
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CCDC 901799: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal SystemCrystal StructureCell Parameters5-cyano-126-trimethyl-14-dihydropyridine-34-dicarboxylic acid dimethylesterExperimental 3D Coordinates
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CCDC 907698: Experimental Crystal Structure Determination

2014

Related Article: Irina Novosjolova, Erika Bizdena, Sergey Belyakov, Maris Turks|2013|Mat.Sci.Appl.Chem.|28|39|doi:10.7250/msac.2013.007

Space GroupCrystallographyCrystal SystemCrystal StructureCell Parameters35-Dicyano-26-dimethyl-14-dihydropyridine-4-carboxylic acid monohydrateExperimental 3D Coordinates
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CCDC 901798: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal SystemCrystal StructureCell Parameters26-dimethyl-14-dihydropyridine-345-tricarboxylic acid trimethyl esterExperimental 3D Coordinates
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CCDC 901796: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal SystemCrystal StructureCell Parameters5-cyano-26-dimethyl-14-dihydropyridine-34-dicarboxylic acid 3-methylester monohydrateExperimental 3D Coordinates
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CCDC 993834: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

methyl 5-acetyl-26-dimethyl-4-phenyl-14-dihydropyridine-3-carboxylateSpace GroupCrystallographyCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 901797: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal System5-cyano-26-dimethyl-14-dihydropyridine-34-dicarboxylic acid dimethyl esterCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 906252: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal Systemmethyl 35-dicyano-126-trimethyl-14-dihydropyridine-4-carboxylateCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 994212: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographymethyl 5-cyano-26-dimethyl-4-phenyl-14-dihydropyridine-3-carboxylateCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 907699: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal SystemCrystal StructureCell ParametersMethyl 35-dicyano-26-dimethyl-14-dihydropyridine-4-carboxylate monohydrateExperimental 3D Coordinates
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CCDC 931406: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal SystemCrystal StructureCell Parameters11'-(26-dimethyl-4-phenyl-14-dihydropyridine-35-diyl)diethanoneExperimental 3D Coordinates
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CCDC 993756: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates26-dimethyl-4-phenyl-14-dihydropyridine-35-dicarbonitrile
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CCDC 907992: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Methyl 35-dicyano-1246-tetramethyl-14-dihydropyridine-4-carboxylateSpace GroupCrystallographyCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 908863: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyMethyl 35-diacetyl-26-dimethyl-14-dihydropyridine-4-carboxylateCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 996232: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal SystemCrystal StructureCell ParametersDimethyl 26-dimethyl-4-phenyl-14-dihydropyridine-35-dicarboxylateExperimental 3D Coordinates
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CCDC 901800: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal System26-dimethyl-14-dihydropyridine-345-tricarboxylic acid 35-dimethyl esterCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 915981: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Methyl 35-diacetyl-126-trimethyl-14-dihydropyridine-4-carboxylateSpace GroupCrystallographyCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 933608: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal SystemCrystal StructureCell Parameters35-diacetyl-26-dimethyl-14-dihydropyridine-4-carboxylic acidExperimental 3D Coordinates
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CCDC 991747: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallography5-acetyl-26-dimethyl-4-phenyl-14-dihydropyridine-3-carbonitrileCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 907837: Experimental Crystal Structure Determination

2014

Related Article: Inguna Goba, Baiba Turovska, Sergey Belyakov, Edvards Liepinsh|2014|J.Mol.Struct.|1074|549|doi:10.1016/j.molstruc.2014.06.044

Space GroupCrystallographyCrystal SystemCrystal StructureCell ParametersDimethyl 5-acetyl-26-dimethyl-14-dihydropyridine-34-dicarboxylateExperimental 3D Coordinates
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