0000000001305220

AUTHOR

Jesper R. Nilsson

showing 4 related works from this author

Development of functionalized SYBR green II related cyanine dyes for viral RNA detection

2020

Fluorescent probes for sensing nucleic acids have found widespread use in the field of cell and molecular biology. However, probes combined with potential for post-synthetic conjugation, e.g. for intra-endosomal measurements of RNA, are unavailable. Herein we developed cyanine dyes that can be conjugated to viral capsid or other targets. First, we solved the crystal structure of SYBR Green II. The structural elucidation of this commonly used RNA probe provided the basis for synthesizing similar molecules with much desired function for post-synthetic conjugation. To address this need, cyanine dyes were prepared using an alternative synthesis protocol. All studied compounds showed considerabl…

nucleic acidscyaninesväriaineetviruksetfluorescent probesRNA recognitionfluoresenssisynteettiset väriaineetRNAvirusesnukleiinihapotmerkkiaineethost-guest systems
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Development of functionalized SYBR green II related cyanine dyes for viral RNA detection

2020

Abstract Fluorescent probes for sensing nucleic acids have found widespread use in the field of cell and molecular biology. However, probes combined with potential for post-synthetic conjugation, e.g. for intra-endosomal measurements of RNA, are unavailable. Herein we developed cyanine dyes that can be conjugated to viral capsid or other targets. First, we solved the crystal structure of SYBR Green II. The structural elucidation of this commonly used RNA probe provided the basis for synthesizing similar molecules with much desired function for post-synthetic conjugation. To address this need, cyanine dyes were prepared using an alternative synthesis protocol. All studied compounds showed co…

Process Chemistry and TechnologyGeneral Chemical EngineeringIntercalation (chemistry)RNA02 engineering and technologyConjugated systemChromophore010402 general chemistry021001 nanoscience & nanotechnology01 natural sciencesCombinatorial chemistryFluorescence0104 chemical scienceschemistry.chemical_compoundchemistryCapsidNucleic acidCyanine0210 nano-technologyDyes and Pigments
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CCDC 1482405: Experimental Crystal Structure Determination

2020

Related Article: Ville K. Saarnio, Kirsi Salorinne, Visa P. Ruokolainen, Jesper R. Nilsson, Tiia-Riikka Tero, Sami Oikarinen, L. Marcus Wilhelmsson, Tanja M. Lahtinen, Varpu S. Marjomäki|2020|Dyes Pigm.|177|108282|doi:10.1016/j.dyepig.2020.108282

3-methyl-2-((2-(methylsulfanyl)-1-phenylquinolin-4(1H)-ylidene)methyl)-13-benzoxazol-3-ium chloride methanol solvateSpace GroupCrystallographyCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 1482404: Experimental Crystal Structure Determination

2020

Related Article: Ville K. Saarnio, Kirsi Salorinne, Visa P. Ruokolainen, Jesper R. Nilsson, Tiia-Riikka Tero, Sami Oikarinen, L. Marcus Wilhelmsson, Tanja M. Lahtinen, Varpu S. Marjomäki|2020|Dyes Pigm.|177|108282|doi:10.1016/j.dyepig.2020.108282

Space GroupCrystallographyCrystal SystemCrystal StructureCell Parameters2-((2-((2-(dimethylamino)ethyl)sulfanyl)-1-phenylquinolin-4(1H)-ylidene)methyl)-3-methyl-13-benzoxazol-3-ium iodideExperimental 3D Coordinates
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