0000000001311104

AUTHOR

Phillip C. Watts

showing 39 related works from this author

Impact of landscape on spatial genetic structure and diversity ofCoenagrion mercuriale(Zygoptera:Coenagrionidae) in northern France

2015

AbstractLoss and fragmentation of habitat is a current main cause of biodiversity loss in freshwater habitats. Odonates (dragonflies and damselflies) depend on these habitats to complete their development. Fragmentation may be a particular threat for odonates because it generates a network of small habitat patches within which populations could suffer from isolation and loss of genetic diversity. The southern damselfly Coenagrion mercuriale is categorized on the IUCN red list as Near Threatened, largely because of population fragmentation and demographic declines associated with changes in land use. Small populations at the margin of this species’ range are of particular concern because the…

Population fragmentation[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]Near-threatened speciesHabitat fragmentationOdonataEcologybiologyEcologydamselfliesfungisource–sink population structureBiodiversity15. Life on landAquatic Sciencebiology.organism_classificationbarriers to dispersalCoenagrionidaeDamselflyta1181Biological dispersalpopulation genetic structureCoenagrion mercurialehabitat fragmentationComputingMilieux_MISCELLANEOUSEcology Evolution Behavior and SystematicsFreshwater Science
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Urban forest soils harbour distinct and more diverse communities of bacteria and fungi compared to less disturbed forest soils.

2022

Anthropogenic changes to land use drive concomitant changes in biodiversity, including that of the soil microbiota. However, it is not clear how increasing intensity of human disturbance is reflected in the soil microbial communities. To address this issue, we used amplicon sequencing to quantify the microbiota (bacteria and fungi) in the soil of forests (n=312) experiencing four different land uses, national parks (set aside for nature conservation), managed (for forestry purposes), suburban (on the border of an urban area) and urban (fully within a town or city), which broadly represent a gradient of anthropogenic disturbance. Alpha diversity of bacteria and fungi increased with increasin…

metsänkäsittelyforest managementnational parkbiodiversiteettibakteeritkansallispuistotGeneticsfungikaupungistuminenbacteriasieneturbanEcology Evolution Behavior and SystematicsbiodiversityMolecular ecologyREFERENCES
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Intergenerational fitness effects of the early life environment in a wild rodent.

2019

The early life environment can have profound, long-lasting effects on an individual's fitness. For example, early life quality might (a) positively associate with fitness (a silver spoon effect), (b) stimulate a predictive adaptive response (by adjusting the phenotype to the quality of the environment to maximize fitness) or (c) be obscured by subsequent plasticity. Potentially, the effects of the early life environment can persist beyond one generation, though the intergenerational plasticity on fitness traits of a subsequent generation is unclear. To study both intra- and intergenerational effects of the early life environment, we exposed a first generation of bank voles to two early life…

0106 biological sciencesPopulation DensityReproductive successOffspringArvicolinae010604 marine biology & hydrobiologyReproductionfungiMaternal effectSocial environmentRodentiaAdaptive responseBiology010603 evolutionary biology01 natural sciencesPopulation densityPredictive adaptive responseTraitAnimalsAnimal Science and ZoologyFemaleSeasonsEcology Evolution Behavior and SystematicsDemographyThe Journal of animal ecologyREFERENCES
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Balancing selection maintains polymorphisms at neurogenetic loci in field experiments

2017

Most variation in behavior has a genetic basis, but the processes determining the level of diversity at behavioral loci are largely unknown for natural populations. Expression of arginine vasopressin receptor 1a (Avpr1a) and oxytocin receptor (Oxtr) in specific regions of the brain regulates diverse social and reproductive behaviors in mammals, including humans. That these genes have important fitness consequences and that natural populations contain extensive diversity at these loci implies the action of balancing selection. In Myodes glareolus, Avpr1a and Oxtr each contain a polymorphic microsatellite locus located in their 5′ regulatory region (the regulatory region-associated microsatel…

Male0301 basic medicineReceptors Vasopressindensity-dependent selectionAvpr1aLocus (genetics)Regulatory Sequences Nucleic AcidBiologyBalancing selection03 medical and health sciencesMyodes glareolusGenotypeAnimalsAlleleGeneticsGenetic diversityMultidisciplinaryReproductive successArvicolinaeta1184ReproductionOxtrBiological SciencesOxytocin receptor030104 developmental biologyGene Expression RegulationReceptors Oxytocinsexual conflictta1181MicrosatelliteFemaleGenetic FitnessMicrosatellite RepeatsProceedings of the National Academy of Sciences
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Skin and gut microbiomes of a wild mammal respond to different environmental cues

2018

Background Animal skin and gut microbiomes are important components of host fitness. However, the processes that shape the microbiomes of wildlife are poorly understood, particularly with regard to exposure to environmental contaminants. We used 16S rRNA amplicon sequencing to quantify how exposure to radionuclides impacts the skin and gut microbiota of a small mammal, the bank vole Myodes glareolus, inhabiting areas within and outside the Chernobyl Exclusion Zone (CEZ), Ukraine. Results Skin microbiomes of male bank voles were more diverse than females. However, the most pronounced differences in skin microbiomes occurred at a larger spatial scale, with higher alpha diversity in the skin m…

0301 basic medicineMalesuolistomikrobistoBeta diversityBiodiversityEnvironmental pollutionGut florasäteilybiologiaRNA Ribosomal 16SRadiation IonizingWild mammalSkin2. Zero hungerbiologyGeographyintegumentary systemympäristön saastuminenArvicolinaeionisoiva säteilyBiodiversityPollutionBank volesaastuminenIonising radiationlcsh:QR100-130FemaleMicrobiology (medical)metsämyyräympäristötekijätAnthropogenic impact030106 microbiologyZoologyMicrobiologylcsh:Microbial ecology03 medical and health sciencesMicrobial ecologyAnimalsMicrobiomeRadioisotopesBacteriaResearch15. Life on landbiology.organism_classificationbiodiversiteettiGastrointestinal Microbiome030104 developmental biologymikrobisto13. Climate actionvillieläimetSkin microbiomeAlpha diversityEnvironmental PollutionMicrobiome
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Stabilizing selection on microsatellite allele length at arginine vasopressin 1a receptor and oxytocin receptor loci

2017

The loci arginine vasopressin receptor 1a ( avpr1a ) and oxytocin receptor ( oxtr ) have evolutionarily conserved roles in vertebrate social and sexual behaviour. Allelic variation at a microsatellite locus in the 5′ regulatory region of these genes is associated with fitness in the bank vole Myodes glareolus . Given the low frequency of long and short alleles at these microsatellite loci in wild bank voles, we used breeding trials to determine whether selection acts against long and short alleles. Female bank voles with intermediate length avpr1a alleles had the highest probability of breeding, while male voles whose avpr1a alleles were very different in length had reduced probability of …

0106 biological sciences0301 basic medicine1001MaleReceptors Vasopressin197VNTRLocus (genetics)gene dynamicsBiology010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesGene FrequencyGenotypeGenetic variationAnimalsBehaviourAlleleStabilizing selectionSelection GeneticAllele frequencyAllelesGeneral Environmental ScienceGeneticsnoncoding genomeGeneral Immunology and MicrobiologylisääntymiskäyttäytyminenArvicolinae70Genetic Variation14General MedicineOxytocin receptor030104 developmental biologyReceptors OxytocinMicrosatelliteta1181Femalereproductive behaviourGeneral Agricultural and Biological SciencesResearch ArticleMicrosatellite Repeats
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Mixed support for an alignment between phenotypic plasticity and genetic differentiation in damselfly wing shape

2023

The relationship between genetic differentiation and phenotypic plasticity can provide information on whether plasticity generally facilitates or hinders adaptation to environmental change. Here, we studied wing shape variation in a damselfly (Lestes sponsa) across a latitudinal gradient in Europe that differed in time constraints mediated by photoperiod and temperature. We reared damselflies from northern and southern populations in the laboratory using a reciprocal transplant experiment that simulated time-constrained (i.e. northern) and unconstrained (southern) photoperiods and temperatures. After emergence, adult wing shape was analysed using geometric morphometrics. Wings from individu…

Evolutionary Biologywing shapeplastisuuslatitudephotoperiodZoologiphenotypic plasticityEvolutionsbiologipopulaatiotpopulaatiogenetiikkagenetic differentiationfenotyyppiG x EZoologyLestesEcology Evolution Behavior and SystematicsJournal of Evolutionary Biology
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Natural selection mediated by seasonal time constraints increases the alignment between evolvability and developmental plasticity

2021

Abstract Phenotypic plasticity can either hinder or promote adaptation to novel environments. Recent studies that have quantified alignments between plasticity, genetic variation, and divergence propose that such alignments may reflect constraints that bias future evolutionary trajectories. Here, we emphasize that such alignments may themselves be a result of natural selection and do not necessarily indicate constraints on adaptation. We estimated developmental plasticity and broad sense genetic covariance matrices (G) among damselfly populations situated along a latitudinal gradient in Europe. Damselflies were reared at photoperiod treatments that simulated the seasonal time constraints ex…

Male0106 biological sciences0301 basic medicinelife historyOdonata01 natural sciencesG‐matrixphenotypic plasticityDivergenceEvolutionsbiologiG&#8208time constraintsdevelopmental biassopeutuminenNatural selectionluonnonvalintalatitudeAdaptation PhysiologicalBiological EvolutionOriginal ArticleFemaleSeasonsGeneral Agricultural and Biological Sciencesympäristönmuutoksetgenetic constraintsPhotoperiodevoluutioLestesBiology010603 evolutionary biology03 medical and health sciencesGeneticsAnimalsSelection GeneticAdaptationEcology Evolution Behavior and SystematicsSelection (genetic algorithm)Phenotypic plasticityEvolutionary BiologyhentosudenkorennotGenetic VariationOriginal Articlesbiology.organism_classificationmatrixEvolvability030104 developmental biologyEvolutionary biologyDevelopmental plasticityfenotyyppiAdaptation
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Comparable response of wild rodent gut microbiome to anthropogenic habitat contamination

2021

Abstract Species identity is thought to dominate over environment in shaping wild rodent gut microbiota, but it remains unknown whether the responses of host gut microbiota to shared anthropogenic habitat impacts are species-specific or if the general gut microbiota response is similar across host species. Here, we compare the influence of exposure to radionuclide contamination on the gut microbiota of four wild mouse species: Apodemus flavicollis, A. sylvaticus, A. speciosus and A. argenteus. Building on the evidence that radiation impacts bank vole (Myodes glareolus) gut microbiota, we hypothesized that radiation exposure has a general impact on rodent gut microbiota. Because we sampled (…

0106 biological sciences0301 basic medicineSympatryRodentanthropogenic disturbancejyrsijätsuolistomikrobistoZoologygut microbiomeGut flora010603 evolutionary biology01 natural sciencesdigestive systembakteeritMice03 medical and health sciencesPhylogeneticsRNA Ribosomal 16Sbiology.animalGeneticsAnimalspollutionmikrobitEcology Evolution Behavior and SystematicsbiologyArvicolinaeHost (biology)ympäristön saastuminenMicrobiotaionisoiva säteilybiology.organism_classificationGastrointestinal Microbiomeenvironmental stressBank vole030104 developmental biologyHabitatsuolisto13. Climate actionympäristövaikutuksetApodemusMurinaeionizing radiation
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Exposure to environmental radionuclides associates with tissue-specific impacts on telomerase expression and telomere length

2019

International audience; Telomeres, the protective structures at the ends of chromosomes, can be shortened when individuals are exposed to stress. In some species, the enzyme telomerase is expressed in adult somatic tissues, and potentially protects or lengthens telomeres. Telomeres can be damaged by ionizing radiation and oxidative stress, although the effect of chronic exposure to elevated levels of radiation on telomere maintenance is unknown for natural populations. We quantified telomerase expression and telomere length (TL) in different tissues of the bank vole Myodes glareolus, collected from the Chernobyl Exclusion Zone, an environment heterogeneously contaminated with radionuclides,…

Male0301 basic medicineTelomerasemetsämyyräSomatic celllcsh:MedicineBiologymedicine.disease_causeArticlesäteilybiologia03 medical and health sciences0302 clinical medicineTelomere HomeostasisDownregulation and upregulationRadiation IonizingTestismedicineAnimalstissuesRadiosensitivitybank volelcsh:ScienceTelomeraseRadioisotopes[SDV.EE]Life Sciences [q-bio]/Ecology environmentMultidisciplinaryArvicolinaeionisoiva säteilylcsh:RTelomere HomeostasisEnvironmental ExposureTelomerebiology.organism_classificationkudoksetTelomereCell biologyBank vole030104 developmental biologyChernobyl Nuclear AccidentGene Expression RegulationLiverOrgan Specificity13. Climate actionlcsh:Qtelomeerit030217 neurology & neurosurgeryOxidative stressScientific Reports
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Fibroblasts from bank voles inhabiting Chernobyl have increased resistance against oxidative and DNA stresses

2018

Background Elevated levels of environmental ionizing radiation can be a selective pressure for wildlife by producing reactive oxygen species and DNA damage. However, the underlying molecular mechanisms that are affected are not known. Results We isolated skin fibroblasts from bank voles (Myodes glareolus) inhabiting the Chernobyl nuclear power plant accident site where background radiation levels are about 100 times greater than in uncontaminated areas. After a 10 Gy dose of gamma radiation fibroblasts from Chernobyl animals recovered faster than fibroblasts isolated from bank voles living in uncontaminated control area. The Chernobyl fibroblasts were able to sustain significantly higher do…

Male0301 basic medicinep53Antioxidantmedicine.medical_treatment010501 environmental sciences01 natural sciencesAntioxidantsIonizing radiationsäteilybiologiachemistry.chemical_classificationCell DeathbiologyArvicolinaelcsh:CytologyBank volefibroblastitOxidantshumanitiesCell biologyAntioxidant capacityBank voleResearch ArticleG2 PhaseCell SurvivalDNA damagemetsämyyräOxidative phosphorylationCell LineMicrobiologyChernobyl03 medical and health sciencesmedicineAnimalsEnvironmental ionizing radiationlcsh:QH573-671Geneoksidatiivinen stressi0105 earth and related environmental sciencesantioksidantitReactive oxygen speciesCell Cycle CheckpointsDNACell BiologyFibroblastsbiology.organism_classificationresistenssiOxidative Stress030104 developmental biologyChernobyl Nuclear AccidentchemistryGamma RaysApoptosisbank volesDNA damageTumor Suppressor Protein p53BMC Cell Biology
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Exposure to environmental radionuclides alters mitochondrial DNA maintenance in a wild rodent

2020

AbstractMitochondria are sensitive to oxidative stress, including that derived from ionizing radiation. To quantify the effects of exposure to environmental radionuclides on mitochondrial DNA (mtDNA) dynamics in wildlife, bank voles (Myodes glareolus) were collected from the chernobyl exclusion zone (CEZ), where animals are exposed to elevated levels of radionuclides, and from uncontaminated areas within the CEZ and elsewhere in Ukraine. Brains of bank voles from outside the CEZ were characterized by low mtDNA copy number and low mtDNA damage; by contrast, bank voles within the CEZ had high mtDNA copy number and high mtDNA damage, consistent with putative damaging effects of elevated radiat…

0301 basic medicineIonizing radiationMitochondrial DNARodentmetsämyyrämitokondriotZoologyMyodes glareolusBiologyMitochondrionmedicine.disease_cause03 medical and health sciences0302 clinical medicinebiology.animalMyodes glareolusmedicineGeneEcology Evolution Behavior and Systematicsmitokondrio-DNACopy numberionisoiva säteilyDNAMitochondria030104 developmental biologyMitochondrial biogenesisAnimal ecology030220 oncology & carcinogenesisDNA damage[SDE.BE]Environmental Sciences/Biodiversity and EcologyOxidative stress
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Sex-Biased Inbreeding Effects on Reproductive Success and Home Range Size of the Critically Endangered Black Rhinoceros

2013

A central premise of conservation biology is that small populations suffer reduced viability through loss of genetic diversity and inbreeding. However, there is little evidence that variation in inbreeding impacts individual reproductive success within remnant populations of threatened taxa, largely due to problems associated with obtaining comprehensive pedigree information to estimate inbreeding. In the critically en- dangered black rhinoceros, a species that experienced severe demographic reductions, we used model selection to identify factors associated with variation in reproductive success (number of offspring). Factors examined as predictors of reproductive success were age, home ran…

Genetic diversityEcologyReproductive successSexual selectionHome rangeThreatened speciesInbreeding depressionZoologySmall population sizeBiologyInbreedingEcology Evolution Behavior and SystematicsNature and Landscape ConservationConservation Biology
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Expansion of rDNA and pericentromere satellite repeats in the genomes of bank voles Myodes glareolus exposed to environmental radionuclides

2021

Abstract Altered copy number of certain highly repetitive regions of the genome, such as satellite DNA within heterochromatin and ribosomal RNA loci (rDNA), is hypothesized to help safeguard the genome against damage derived from external stressors. We quantified copy number of the 18S rDNA and a pericentromeric satellite DNA (Msat‐160) in bank voles (Myodes glareolus) inhabiting the Chernobyl Exclusion Zone (CEZ), an area that is contaminated by radionuclides and where organisms are exposed to elevated levels of ionizing radiation. We found a significant increase in 18S rDNA and Msat‐160 content in the genomes of bank voles from contaminated locations within the CEZ compared with animals f…

anthropogenic disturbancemetsämyyräHeterochromatinSatellite DNATšernobylin ydinonnettomuusZoologyMyodes glareolusrDNABiologyGenomeChernobylsäteilybiologia03 medical and health sciencescopy numberMyodes glareolusluonnonvaraiset eläimetchernobylEcology Evolution Behavior and SystematicsQH540-549.5030304 developmental biologyNature and Landscape ConservationOriginal Research0303 health sciencesEcologyionisoiva säteily030302 biochemistry & molecular biologyDNARepetitive RegionsRibosomal RNAbiology.organism_classificationmyodes glareolusSatellite (biology)ionizing radiationGenome architectureEcology and Evolution
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Exposure to environmental radionuclides is associated with altered metabolic and immunity pathways in a wild rodent

2019

Wildlife inhabiting environments contaminated by radionuclides face putative detrimental effects of exposure to ionizing radiation, with biomarkers such as an increase in DNA damage and/or oxidative stress commonly associated with radiation exposure. To examine the effects of exposure to radiation on gene expression in wildlife, we conducted a de novo RNA sequencing study of liver and spleen tissues from a rodent, the bank vole Myodes glareolus. Bank voles were collected from the Chernobyl Exclusion Zone (CEZ), where animals were exposed to elevated levels of radionuclides, and from uncontaminated areas near Kyiv, Ukraine. Counter to expectations, we did not observe a strong DNA damage resp…

0106 biological sciences0301 basic medicineRodentDNA Repairmedicine.disease_cause01 natural sciencessäteilybiologiachemistry.chemical_compoundRadiation IonizingMyodes glareolusstable isotopepollutionaineenvaihduntaBeta oxidationradionuclides2. Zero hungerbiologyArvicolinaeFatty AcidsRadiation ExposureRNAseqBank voleMolecular AdaptationLiverimmuunijärjestelmäOriginal ArticleUkraineOxidation-ReductionmetsämyyräDNA damageDNA repair010603 evolutionary biologyMicrobiology03 medical and health sciencesImmunitybiology.animalGeneticsmedicineAnimalsEcology Evolution Behavior and SystematicsRadioisotopesFatty acid metabolismLipid metabolismDNAbiology.organism_classificationLipid MetabolismOxidative Stress030104 developmental biologychemistryChernobyl Nuclear Accident13. Climate actionImmune SystemRNAORIGINAL ARTICLESOxidative stressSpleenDNA DamageMutagens
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High variation in last male sperm precedence and genital morphology in the emerald damselfly, Lestes sponsa

2020

Abstract In organisms in which individuals mate multiply, knowledge of the proportion of offspring sired by the last male to mate (P2) under field conditions is important for a thorough understanding of how sexual selection works in nature. In many insect groups, pronounced intraspecific variation in P2 is commonplace. Interestingly, however, in stark contrast to these observations, compilation of P2 data in dragonflies and damselflies (Odonata) indicates that a high P2, seldom below 0.95, is a feature of this taxon. Here we used double digest restriction-site associated DNA sequencing to generate a panel of single nucleotide polymorphisms (SNPs) with which we could determine paternity and …

0106 biological sciencesOffspringlast male sperm precedenceZoologyaedeagusMorphology (biology)sukupuolielimet010603 evolutionary biology01 natural sciencesLestes sponsaEvolutionsbiologi03 medical and health sciencesDamselflysexual selectionSex organmuuntelu (biologia)Ecology Evolution Behavior and Systematics030304 developmental biologyEvolutionary Biology0303 health sciencesbiologylisääntymiskäyttäytyminenhentosudenkorennotddRADseqP-2biology.organism_classificationP2Variation (linguistics)sukupuolivalintaSperm precedenceField conditions
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Interpretation of gut microbiota data in the ‘eye of the beholder’: A commentary and re‐evaluation of data from ‘Impacts of radiation exposure on the…

2021

1.Evidence that exposure to environmental pollutants can alter the gut microbiota composition of wildlife includes studies of rodents exposed to radionuclides. 2.Antwis et al. (2021) used amplicon sequencing to characterise the gut microbiota of four species of rodent (Myodes glareolus, Apodemus agrarius, A. flavicollis and A. sylvaticus) inhabiting the Chernobyl Exclusion Zone (CEZ) to examine possible changes in gut bacteria (microbiota) and gut fungi (mycobiota) associated with exposure to radionuclides and whether the sample type (from caecum or faeces) affected the analysis. 3.The conclusions derived from the analyses of gut mycobiota are based on data that represent a mixture of inges…

jyrsijätsuolistomikrobistoTšernobylin ydinonnettomuusAnimals Wilddigestive systemsäteilybiologiaMicemicrobiotaAnimalsradioaktiivinen säteilyluonnonvaraiset eläimetEcology Evolution Behavior and SystematicsMammalsRadioisotopesBacteriaamplicon sequencingArvicolinaedigestive oral and skin physiologyFungiRadiation ExposureGastrointestinal MicrobiomeChernobyl Nuclear Accidentradiation effectsAnimal Science and ZoologyMurinaemycobiotadietMycobiomeJournal of Animal Ecology
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Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus.

2018

International audience; Gut microbiota composition depends on many factors, although the impact of environmental pollution is largely unknown. We used amplicon sequencing of bacterial 16S rRNA genes to quantify whether anthropogenic radionuclides at Chernobyl (Ukraine) impact the gut microbiome of the bank vole Myodes glareolus. Exposure to elevated levels of environmental radionuclides had no detectable effect on the gut community richness but was associated with an almost twofold increase in the Firmicutes:Bacteroidetes ratio. Animals inhabiting uncontaminated areas had remarkably similar gut communities irrespective of their proximity to the nuclear power plant. Hence, samples could be c…

0301 basic medicine16STechnologymetsämyyräFirmicutessuolistomikrobisto030106 microbiologyMicrobial metabolismgut microbiomeZoologyFirmicutesEnvironmental pollutionGut floraBrief CommunicationMicrobiologysäteilybiologia03 medical and health sciencesMicrobial ecologyRNA Ribosomal 16SGeneticsAnimalsMicrobiomebank voleLife Below WaterEcology Evolution Behavior and Systematics[SDV.EE]Life Sciences [q-bio]/Ecology environmentRibosomalbiologyBacteriaBacteroidetesArvicolinaeBacteroidetessäteilyBiological Sciencesbiology.organism_classificationGastrointestinal MicrobiomeBank vole030104 developmental biologyChernobyl Nuclear Accident13. Climate actionenvironmental radionuclidesRNACarbohydrate MetabolismEnvironmental SciencesRadioactive Pollutants
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A legacy of contrasting spatial genetic structure on either side of the Atlantic-Mediterranean transition zone in a marine protist

2012

The mechanisms that underpin the varied spatial genetic structures exhibited by free-living marine microorganisms remain controversial, with most studies emphasizing a high dispersal capability that should redistribute genetic diversity in contrast to most macroorganisms whose populations often retain a genetic signature of demographic response to historic climate fluctuations. We quantified the European phylogeographic structure of the marine flagellate Oxyrrhis marina and found a marked difference in spatial genetic structure, population demography, and genetic diversity between the northwest Atlantic and Mediterranean Sea that reflects the persistent separation of these regions as well …

Environmental changePopulationBiologygeneettinen rakenneElectron Transport Complex IVOxyrrhis marinaGenetic variationAnimalseducationAtlantic OceanPhylogenyeducation.field_of_studyGenetic diversityMultidisciplinaryGeographyModels GeneticMediterranean RegionEcologyGenetic VariationBiological Sciencesbiology.organism_classificationOxyrrhis marinaEuropeGenetic divergencePhylogeographyGenetics PopulationHaplotypesGenetic structureDinoflagellidaBiological dispersalta1181spatial genetic structureEnvironmental MonitoringProceedings of the National Academy of Sciences of the United States of America
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First Report of Anaplasma phagocytophilum and Babesia microti in Rodents in Finland

2014

Tick-borne diseases pose an increasingly important public health problem in Europe. Rodents are the reservoir host for many tick-transmitted pathogens, including Anaplasma phagocytophilum and Babesia microti, which can cause human granulocytic anaplasmosis and babesiosis, respectively. To estimate the presence of these pathogens in rodents in Finland, we examined blood samples from 151 bank voles (Myodes glareolus) and demonstrate, for the first time, that A. phagocytophilum and B. microti commonly infect bank voles (in 22% and 40% of animals, respectively) in Finland. Sequence analysis of a fragment of 18S rRNA showed that the B. microti strain isolated was identical to the Munich strain, …

DNA BacterialMaleVeterinary medicineAnaplasmosisHuman granulocytic anaplasmosisanimal diseasesZoologyRodentiaTickBabesia microtiMicrobiologyRodent DiseasesTicksVirologyIxodes triangulicepsBabesiosisZoonosesparasitic diseasesmedicineAnimalsHumansFinlandTick-borne diseasebiologyArvicolinaeBabesiosisOriginal ArticlesSequence Analysis DNADNA Protozoanbiology.organism_classificationmedicine.diseasebacterial infections and mycosesAnaplasma phagocytophilumInfectious DiseasesArvicolinaeTick-Borne Diseasesta1181FemalePublic HealthAnaplasmosisAnaplasma phagocytophilum
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Ecological mechanisms can modify radiation effects in a key forest mammal of Chernobyl

2019

International audience; Nuclear accidents underpin the need to quantify the ecological mechanisms which determine injury to ecosystems from chronic low-dose radiation. Here, we tested the hypothesis that ecological mechanisms interact with ionizing radiation to affect natural populations in unexpected ways. We used large-scale replicated experiments and food manipulations in wild populations of the rodent, Myodes glareolus, inhabiting the region near the site of the Chernobyl disaster of 1986. We show linear decreases in breeding success with increasing ambient radiation levels with no evidence of any threshold below which effects are not seen. Food supplementation of experimental populatio…

0106 biological sciences[SDE.MCG]Environmental Sciences/Global Changesfood supplementationMyodes glareolusnuclear accidentBiology010603 evolutionary biology01 natural sciencesydinonnettomuudetIonizing radiationChernobylRadioactive contaminationForest ecologyEcosystemEcology Evolution Behavior and SystematicsMyodes volekey specieschronic radiationEcologyReproductive successEcologyionisoiva säteily010604 marine biology & hydrobiologysäteily15. Life on landContaminationforest ecosystemTsernobylmetsäekosysteemitpopulation sensitivity13. Climate actionreproductive successta1181Mammalionizing radiationpopulation increase
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Infection Load and Prevalence of Novel Viruses Identified from the Bank Vole Do Not Associate with Exposure to Environmental Radioactivity

2019

Bank voles (Myodes glareolus) are host to many zoonotic viruses. As bank voles inhabiting areas contaminated by radionuclides show signs of immunosuppression, resistance to apoptosis, and elevated DNA repair activity, we predicted an association between virome composition and exposure to radionuclides. To test this hypothesis, we studied the bank vole virome in samples of plasma derived from animals inhabiting areas of Ukraine (contaminated areas surrounding the former nuclear power plant at Chernobyl, and uncontaminated areas close to Kyiv) that differed in level of environmental radiation contamination. We discovered four strains of hepacivirus and four new virus sequences: two adeno-asso…

Male0301 basic medicinesekvensointiviruksetmetsämyyräenvironmental radiationHepacivirus030106 microbiologylcsh:QR1-502Zoologyadeno-associated virusEnvironmentlcsh:MicrobiologyArticleVirussäteilybiologiaArterivirus03 medical and health sciencesVirologyarterivirusRadioactive contaminationPrevalenceAnimalsHuman viromeplasma viromesbank volebiologyArvicolinaeHost (biology)High-Throughput Nucleotide SequencingViral Loadbiology.organism_classification3. Good healthBank vole030104 developmental biologyInfectious DiseasesNuclear Power PlantsVirusesmosavirusFemalenext-generation sequencingViral loadRadioactive PollutantsViruses
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Female sexual signaling in a capital breeder, the European glow-worm Lampyris noctiluca

2021

AbstractTheory predicts that because costs constrain female sexual signaling, females are expected to have a low signaling effort that is increased with passing time until mating is secured. This pattern of signaling is expected to result from females balancing the costs associated with a higher than optimal signaling effort and those costs associated with a low signaling effort that increase the likelihood of delayed mating. We tested whether this prediction applies in the common glow-worm Lampyris noctiluca (Coleoptera, Lampyridae), a capital breeding species in which females glow at night to attract males. Contrary to predictions, we found that the duration of female sexual signaling sig…

0106 biological sciences0301 basic medicineaviationSexual signaling costsFemale sexual selectioneläinten käyttäytyminen010603 evolutionary biology01 natural sciences03 medical and health sciencessignaalitLampyridaeMatingEcology Evolution Behavior and SystematicsCapital breedinglisääntymiskäyttäytyminen030102 biochemistry & molecular biologybiologyFemale sexual signalingbiology.organism_classificationBreeder (cellular automaton)aviation.aircraft_modelsukupuolivalintaAnimal ecologyInsect ScienceCapital (economics)kiiltomadotLampyris noctilucaLampyris noctilucaLampyridaeDemography
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Applying the Anna Karenina principle for wild animal gut microbiota: Temporal stability of the bank vole gut microbiota in a disturbed environment.

2020

Gut microbiota play an important role in host health. Yet, the drivers and patterns of microbiota imbalance (dysbiosis) in wild animals remain largely unexplored. One hypothesised outcome of stress on animal microbiomes is a destabilised microbial community that is characterised by an increase in inter-individual differences compared with microbiomes of healthy animals, which are expected to be (a) temporally stable and (b) relatively similar among individuals. This set of predictions for response of microbiomes to stressors is known as the Anna Karenina principle (AKP) for animal microbiomes. We examine the AKP in a wild mammal inhabiting disturbed environments by conducting a capture-mark…

0106 biological sciencesbiologyBacteriaHost (biology)Arvicolinae010604 marine biology & hydrobiologyMicrobiotaChronic radiation syndromeZoologyAnna Karenina principleAnimals WildGut florabiology.organism_classificationmedicine.disease010603 evolutionary biology01 natural sciencesGastrointestinal MicrobiomeBank volemedicineAnimalsAnimal Science and ZoologyMammalMicrobiomeDysbiosisEcology Evolution Behavior and SystematicsThe Journal of animal ecologyREFERENCES
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Early life of fathers affects offspring fitness in a wild rodent.

2019

Intergenerational fitness effects on offspring due to the early life of the parent are well studied from the standpoint of the maternal environment, but intergenerational effects owing to the paternal early life environment are often overlooked. Nonetheless, recent laboratory studies in mammals and ecologically relevant studies in invertebrates predict that paternal effects can have a major impact on the offspring's phenotype. These nongenetic, environment-dependent paternal effects provide a mechanism for fathers to transmit environmental information to their offspring and could allow rapid adaptation. We used the bank vole Myodes glareolus, a wild rodent species with no paternal care, to …

0106 biological sciences0301 basic medicineMaleOffspringLongevityBiologyAffect (psychology)010603 evolutionary biology01 natural sciencesEpigenesis Genetic03 medical and health sciencesFathersAnimalsEcology Evolution Behavior and SystematicsMechanism (biology)ArvicolinaefungiSocial environmentMating Preference Animalbiology.organism_classificationPhenotypeAdaptation PhysiologicalBank vole030104 developmental biologyFemaleGenetic FitnessSeasonsAdaptationPaternal careDemographyJournal of evolutionary biologyREFERENCES
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Evolved high aerobic capacity has context-specific effects on gut microbiota

2022

Publisher Copyright: Copyright © 2022 Hanhimäki, Watts, Koskela, Koteja, Mappes and Hämäläinen. Gut microbiota is expected to coevolve with the host's physiology and may play a role in adjusting the host's energy metabolism to suit the host's environment. To evaluate the effects of both evolved host metabolism and the environmental context in shaping the gut microbiota, we used a unique combination of (1) experimental evolution to create selection lines for a fast metabolism and (2) a laboratory-to-field translocation study. Mature bank voles Myodes glareolus from lines selected for high aerobic capacity (A lines) and from unselected control (C lines) were released into large (0.2 ha) outdo…

SELECTIONevoluutiobiologiasekvensointilongitudinalFITNESSmetsämyyräsuolistomikrobistoDIETHOST GENETICSBANK VOLESelinympäristömikrobitexperimental evolutionbank voleaineenvaihduntaEcology Evolution Behavior and Systematicsmetabolic rateEcologygut microbiotaRESILIENCE16S rRNA sequencingSIZEsuolistofield experimentselection linesMETABOLIC-RATE1181 Ecology evolutionary biologyBACTERIAaerobinen suorituskyky
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Low-level environmental metal pollution is associated with altered gut microbiota of a wild rodent, the bank vole (Myodes glareolus)

2021

Mining and related industries are a major source of metal pollution. In contrast to the well-studied effects of exposure to metals on animal physiology and health, the impacts of environmental metal pollution on the gut microbiota of wild animals are virtually unknown. As the gut microbiota is a key component of host health, it is important to understand whether metal pollution can alter wild animal gut microbiota composition. Using a combination of 16S rRNA amplicon sequencing and quantification of metal levels in kidneys, we assessed whether multi-metal exposure (the sum of normalized levels of fifteen metals) was associated with changes in gut microbiota of wild bank voles (Myodes glareo…

Environmental Engineering010504 meteorology & atmospheric sciencesRodentZoologyRodentiaEnvironmental pollution010501 environmental sciencesBiologyGut floradigestive system01 natural sciencesRNA Ribosomal 16Sbiology.animalAnimalsEnvironmental ChemistryMicrobiomeWaste Management and Disposal0105 earth and related environmental sciencesArvicolinaeHost (biology)MicrobiotaLachnospiraceaeEnvironmental exposurebiology.organism_classificationPollutionGastrointestinal MicrobiomeBank voleScience of The Total Environment
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Analysis of heteroplasmy in bank voles inhabiting the Chernobyl exclusion zone : A commentary on Baker et al. (2017) "Elevated mitochondrial genome v…

2018

0106 biological sciences0301 basic medicineMitochondrial DNARodentmetsämyyräecological geneticsevoluutio010603 evolutionary biology01 natural sciences03 medical and health sciencesMolecular evolutionbiology.animalGeneticsExclusion zoneEcology Evolution Behavior and Systematicsbiologymolecular evolutionsäteilyPopulation ecologyEcological geneticsgeneettinen muunteluHeteroplasmypopulaatioekologia030104 developmental biologyVariation (linguistics)Evolutionary biologypopulation ecologyCommentaryta1181mutaatiotGeneral Agricultural and Biological SciencesEvolutionary Applications
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Genome characterisation of two Ljungan virus isolates from wild bank voles (Myodes glareolus) in Sweden

2015

Ljungan virus (LV) (family Picornaviridae, genus Parechovirus) is a suspected zoonotic pathogen with associations to human disease in Sweden. LV is a single-stranded RNA virus with a positive sense genome. There are five published Ljungan virus strains, three isolated from Sweden and two from America, and are classified into four genotypes. A further two strains described here were isolated from wild bank voles (Myodes glareolus) caught in Vastmanlands county, Sweden in 1994. These strains were sequenced using next generation pyrosequencing technology on the GS454flx platform. Genetic and phylogenetic analysis of the obtained genomes confirms isolates LV340 and LV342 as two new putative mem…

Microbiology (medical)Genes ViralGenotypeGS454ParechovirusGenome ViralMicrobiologyGenomeEvolution MolecularPhylogeneticsUntranslated Regionspositive selectionGenotypeevolutionMyodes glareolusGeneticsAnimalsSelection GeneticMolecular BiologyEcology Evolution Behavior and SystematicsPhylogenyGeneticsSwedenPicornaviridae InfectionsbiologyPhylogenetic treeArvicolinaeta1183RNA virusLjungan virusbiology.organism_classificationVirologyInfectious DiseasesLjungan virusArvicolinaeVP3ParechovirusNucleic Acid ConformationRNA Viralta1181Infection, Genetics and Evolution
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Transcriptional Upregulation of DNA Damage Response Genes in Bank Voles (Myodes glareolus) Inhabiting the Chernobyl Exclusion Zone

2018

Exposure to ionizing radiation (IR) from radionuclides released into the environment can damage DNA. An expected response to exposure to environmental radionuclides, therefore, is initiation of DNA damage response (DDR) pathways. Increased DNA damage is a characteristic of many organisms exposed to radionuclides but expression of DDR genes of wildlife inhabiting an area contaminated by radionuclides is poorly understood. We quantified expression of five central DDR genes Atm, Mre11, p53, Brca1, and p21 in the livers of the bank vole Myodes glareolus that inhabited areas within the Chernobyl Exclusion Zone (CEZ) that differed in levels of ambient radioactivity, and also from control areas ou…

0301 basic medicinevauriotDNA damagetuhotZoologyMyodes glareolusDNA repairBiologydnamedicine.disease_causeChernobyl03 medical and health sciencesDownregulation and upregulationkorjausmedicineMre11oxidative stressExclusion zoneGeneoksidatiivinen stressichernobyllcsh:Environmental sciencesGeneral Environmental Sciencelcsh:GE1-350ionising radiationionisoiva säteilyDNAbiology.organism_classificationBank volebody regions030104 developmental biologyAtmta1181DNA damageionizing radiationOxidative stressFrontiers in Environmental Science
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Does Intraspecific Variation in rDNA Copy Number Affect Analysis of Microbial Communities?

2021

Amplicon sequencing of partial regions of the ribosomal RNA loci (rDNA) is widely used to profile microbial communities. However, the rDNA is dynamic and can exhibit substantial interspecific and intraspecific variation in copy number in prokaryotes and, especially, in microbial eukaryotes. As change in rDNA copy number is a common response to environmental change, rDNA copy number is not necessarily a property of a species. Variation in rDNA copy number, especially the capacity for large intraspecific changes driven by external cues, complicates analyses of rDNA amplicon sequence data. We highlight the need to (i) interpret amplicon sequence data in light of possible interspecific and intr…

ribosomitmikrobistoamplicon sequencingcommunity dynamicsDNA-analyysicopy numberRNAmikrobitDNArRNA
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Ecosystem health and planetary well-being

2024

Healthy ecosystems support the well-being of all organisms on Earth. Yet, the overexploitation of natural resources for human needs and profit has resulted in widespread ecosystem degradation, loss of biodiversity, and climate emergency, which pose fundamental threats to planetary well-being. Impoverished ecosystems may become dysfunctional and fail to provide for the needs of many organisms, including humans and wildlife. Changes in ecosystem functioning and wildlife distributions affect the prevalence and spread of pathogens, with consequences for the health and well-being of human and wildlife communities alike. Increasing contact between humans and domestic and wild animals enable patho…

planetary well-beingekosysteemit (ekologia)taudinaiheuttajatluontokatoeläintauditkasvitauditzoonoositplanetaarinen hyvinvointileviäminenbiodiversiteettiympäristön tila
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Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota.

2020

Abstract Vertebrate gut microbiota provide many essential services to their host. To better understand the diversity of such services provided by gut microbiota in wild rodents, we assembled metagenome shotgun sequence data from a small mammal, the bank vole Myodes glareolus (Rodentia, Cricetidae). We were able to identify 254 metagenome assembled genomes (MAGs) that were at least 50% ( n  = 133 MAGs), 80% ( n  = 77 MAGs) or 95% ( n  = 44 MAGs) complete. As typical for a rodent gut microbiota, these MAGs are dominated by taxa assigned to the phyla Bacteroidetes ( n  = 132 MAGs) and Firmicutes ( n  = 80), with some Spirochaetes ( n  = 15) and Proteobacteria ( n  = 11). Based on coverage over…

Statistics and Probabilitymetagenomicsbacterial genomicsGenomeBacteriametsämyyräArvicolinaesuolistomikrobistoBacterialsequencinggenomiikkaLibrary and Information Sciencesmicrobial ecologybakteeritComputer Science ApplicationsEducationGastrointestinal MicrobiomemikrobiekologiaAnimalslcsh:QStatistics Probability and Uncertaintylcsh:ScienceInformation Systems
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Applying the Anna Karenina principle for wild animal gut microbiota : temporal stability of the bank vole gut microbiota in a disturbed environment

2020

Gut microbiota play an important role in host health. Yet, the drivers and patterns of microbiota imbalance (dysbiosis) in wild animals remain largely unexplored. One hypothesised outcome of stress on animal microbiomes is a destabilised microbial community that is characterised by an increase in inter-individual differences compared with microbiomes of healthy animals, which are expected to be (i) temporally stable and (ii) relatively similar among individuals. This set of predictions for response of microbiomes to stressors is known as the Anna Karenina principle (AKP) for animal microbiomes. We examine the AKP in a wild mammal inhabiting disturbed environments by conducting a capture-mar…

gut dysbiosisanthropogenic disturbancemetsämyyräAnna Karenina principlesuolistomikrobistoionisoiva säteilystable isotope analysisaltistuminenradiation exposureluonnonvaraiset eläimetChernobylenvironmental stresssäteilybiologia
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ESM for Watts et al. Stabilising selection on microsatellite allele length from Stabilizing selection on microsatellite allele length at arginine vas…

2017

Details of model selection procedure (Supplementary Tables 1, 2) and analyses of effect of microsatellite allele length on litter size (Supplementary Methods, Results, Supplementary Table 3).

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Early life of fathers affects offspring fitness in a wild rodent

2019

Intergenerational fitness effects on offspring due to the early life of the parent are well studied from the standpoint of the maternal environment, but intergenerational effects owing to the paternal early life environment are often overlooked. Nonetheless, recent laboratory studies in mammals and ecologically relevant studies in invertebrates predict that paternal effects can have a major impact on the offspring's phenotype. These non‐genetic, environment‐dependent paternal effects provide a mechanism for fathers to transmit environmental information to their offspring, and could allow rapid adaptation. We used the bank vole Myodes glareolus, a wild rodent species with no paternal care, t…

sopeutuminenmetsämyyräfungiepigeneettinen periytyminenearly life environmentadaptationfitnessravintopaternal effectintergenerational effectsprotein restricted dietMyodes glareoluswinter survivaljälkeläisetelinympäristöpopulation densitysocial confrontationhenkiinjääminen
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Defining gut mycobiota for wild animals: a need for caution in assigning authentic resident fungal taxa

2021

Animal gut mycobiota, the community of fungi that reside within the gastrointestinal tract, make an important contribution to host health. Accordingly, there is an emerging interest to quantify the gut mycobiota of wild animals. However, many studies of wild animal gut mycobiota do not distinguish between the fungi that likely can reside within animal gastrointestinal tracts from the fungal taxa that are non-residents, such as macrofungi, lichens or plant symbionts/pathogens that can be ingested as part of the host’s diet. Confounding the non-resident and resident gut fungi may obscure attempts to identify processes associated with the authentic, resident gut mycobiota per se. To redress th…

amplicon sequencinghost-microbe interactionsekvensointisuolistomikrobistoMicrobiotaVeterinary medicinedigestive oral and skin physiologyfungiCommunity analysisintestinal fungicommunity analysismicrofungiMicrobiologyQR1-502Intestinal fungimycobiomeHost-microbe interactionvillieläimetSF600-1100CommentarymicrobiotaMicrofungisienetMycobiomeAmplicon sequencingAnimal Microbiome
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Low-level environmental metal pollution is associated with altered gut microbiota of a wild rodent, the bank vole (Myodes glareolus)

2021

Mining and related industries are a major source of metal pollution. In contrast to the well-studied effects of ex-posure to metals on animal physiology and health, the impacts of environmental metal pollution on the gut mi-crobiota of wild animals are virtually unknown. As the gut microbiota is a key component of host health, it is important to understand whether metal pollution can alter wild animal gut microbiota composition. Using a combination of 16S rRNA amplicon sequencing and quantification of metal levels in kidneys, we assessed whether multi-metal exposure (the sum of normalized levels of fifteen metals) was associated with changes in gut microbiota of wild bank voles (Myodes glar…

ympäristöympäristön saastuminensuolistomikrobistoMetal pollutionEnvironmental Sciences (social aspects to be 507)Gut microbiotadigestive systemEnvironmental pollutionmikrobistovillieläimetMetalseläimetterveysvaikutuksetsaastuminenmikrobitMicrobiomemetallitWild animal microbiome
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Data from: Stabilising selection on microsatellite allele length at arginine vasopressin 1a receptor and oxytocin receptor loci

2017

The loci arginine vasopressin receptor 1a (avpr1a) and oxytocin receptor (oxtr) have evolutionarily conserved roles in vertebrate social and sexual behavior. Allelic variation at a microsatellite locus in the 5’ regulatory region of these genes is associated with fitness in the bank vole Myodes glareolus. Given the low frequency of long and short alleles at these microsatellite loci in wild bank voles, we used breeding trials to determine whether selection acts against long and short alleles. Female bank voles with intermediate length avpr1a alleles had the highest probability of breeding, while male voles whose avpr1a alleles were very different in length had reduced probability of breedin…

medicine and health carenon-coding genomeReproductive behaviourVNTRMyodes glareolusLife SciencesMedicinegene dynamics
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