6533b828fe1ef96bd12890e3

RESEARCH PRODUCT

Modeling methods for studying post-translational and transcriptional modifying enzymes.

Maite RocaVicent MolinerIñaki TuñónJuan Aranda

subject

Models MolecularChemistryProcess (engineering)Computational BiologyProteinsNanotechnologyBiochemistryAnalytical ChemistryPost translationalModelling methodsAnimalsHumansBiochemical engineeringProtein Processing Post-Translational

description

Biological catalysis is a complex chemical process that involves not only electronic reorganization in the substrate but also the reorganization of the catalyst. This complexity is even larger in the case of post-transcriptional and post-translational modifications which may involve the interaction between two biomacromolecules. However, the development over the past decades of new computational methods and strategies is offering a detailed molecular picture of the catalytic event and a deep understanding of the mechanisms of chemical reactions in biological environments. Here we review the efforts made in the last years to model catalysis in post-transcriptional and post-translational processes. We stress on the advantages and problems of the different computational strategies and their applicability in different cases.

10.1016/j.cbpa.2012.10.014https://pubmed.ncbi.nlm.nih.gov/23127358