6533b857fe1ef96bd12b4cad

RESEARCH PRODUCT

Lost Strings in Genomes: What Sense Do They Make?

Miguel A. Andrade-navarroNatalia RudenkoJean-fred FontaineMichael G. SadovskyYury Yakubailik

subject

0301 basic medicineGeneticsanimal structuresgenetic structuresinformation scienceString (physics)GenomeCombinatoricsSet (abstract data type)03 medical and health sciences030104 developmental biology0302 clinical medicinePhylogeneticscardiovascular systemLow correlation030217 neurology & neurosurgerySelection (genetic algorithm)Mathematics

description

We studied the sets of avoided strings to be observed over a family of genomes. It was found that the length of the minimal avoided string rarely exceeds 9 nucleotides, with neither respect to a phylogeny of a genome under consideration. The lists of the avoided strings observed over the sets of (related) genomes have been analyzed. Very low correlation between the phylogeny, and the set of those strings has been found.

yearjournalcountryeditionlanguage
2017-01-01
https://doi.org/10.1007/978-3-319-56154-7_3