Search results for " DATA."

showing 10 items of 7270 documents

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

2013

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License.-- et al.

0106 biological sciencesConservation geneticsMalegenotype phenotype correlationGorillaComputingMilieux_LEGALASPECTSOFCOMPUTINGarginineGenoma humà01 natural sciencesOculocutaneous albinism type 4single nucleotide polymorphismAlbinismegenetic variabilityGorillaInbreedinggenetic conservationGenetics0303 health sciencesGenomebiologyarticlecopy number variationHigh-Throughput Nucleotide SequencingSLC45A2 geneGenomicszygosityOculocutaneous albinismFloquet de neu (Goril·la)AlbinismFemaleBiotechnologyamino acid substitutionResearch ArticleSLC45A2Gorilla gorilla gorillaHeterozygoteAlbinismMolecular Sequence Datacomparative genomic hybridizationgene sequenceConservation010603 evolutionary biology03 medical and health sciencesWestern lowland gorillabiology.animalmedicineGeneticsheterozygosityAnimalsAmino Acid Sequencegene030304 developmental biologygene identificationWhole genome sequencingnonhumanGorilla gorillaMembrane Transport ProteinsSequence Analysis DNA15. Life on landbiology.organism_classificationmedicine.diseaseGenòmicaData_GENERALMutationbiology.proteinGenèticaoculocutaneous albinismglycineMicrosatellite RepeatsBMC Genomics
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Effects of changing climate on European stream invertebrate communities : A long-term data analysis

2018

Long-term observations on riverine benthic invertebrate communities enable assessments of the potential impacts of global change on stream ecosystems. Besides increasing average temperatures, many studies predict greater temperature extremes and intense precipitation events as a consequence of climate change. In this study we examined long-term observation data (10-32years) of 26 streams and rivers from four ecoregions in the European Long-Term Ecological Research (LTER) network, to investigate invertebrate community responses to changing climatic conditions. We used functional trait and multi-taxonomic analyses and combined examinations of general long-term changes in communities with deta…

0106 biological sciencesConservation of Natural ResourcesEnvironmental EngineeringClimate ChangeEcology (disciplines)ta1172010603 evolutionary biology01 natural sciencesRiversAnimalsEnvironmental ChemistryEcosystemWaste Management and DisposalEcosystemInvertebrateEcology010604 marine biology & hydrobiologyfungiTemperatureExtreme eventsGlobal changeInvertebratesPollutionEuropeBenthic zoneLong term dataEnvironmental scienceta1181sense organsIntroduced SpeciesBiologieScience of the Total Environment
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AtCCS is a functional homolog of the yeast copper chaperone Ccs1/Lys7

2005

AbstractIn plant chloroplasts two superoxide dismutase (SOD) activities occur, FeSOD and Cu/ZnSOD, with reciprocal regulation in response to copper availability. This system presents a unique model to study the regulation of metal-cofactor delivery to an organelle. The Arabidopsis thaliana gene AtCCS encodes a functional homolog to yeast Ccs1p/Lys7p, a copper chaperone for SOD. The AtCCS protein was localized to chloroplasts where it may supply copper to the stromal Cu/ZnSOD. AtCCS mRNA expression levels are upregulated in response to Cu-feeding and senescence. We propose that AtCCS expression is regulated to allow the most optimal use of Cu for photosynthesis.

0106 biological sciencesCu/Zn superoxide dismutaseChloroplastsSaccharomyces cerevisiae ProteinsMolecular Sequence DataArabidopsisBiophysicsSaccharomyces cerevisiaeMetallo chaperoneChloroplastModels Biological01 natural sciencesBiochemistryGreen fluorescent proteinSuperoxide dismutase03 medical and health sciencesDownregulation and upregulationGene Expression Regulation PlantStructural BiologyOrganelleGeneticsAmino Acid SequenceRNA MessengerMolecular BiologyGene030304 developmental biology0303 health sciencesbiologyArabidopsis ProteinsGene Expression ProfilingGenetic Complementation TestCell BiologyYeastChloroplastProtein TransportBiochemistryChaperone (protein)Mutationbiology.proteinSequence AlignmentCopperMolecular Chaperones010606 plant biology & botanyFEBS Letters
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Ethnobotany of dye plants in Southern Italy, Mediterranean Basin: floristic catalog and two centuries of analysis of traditional botanical knowledge …

2020

Abstract Background Since ancient times, man has learned to use plants to obtain natural dyes, but this traditional botanical knowledge (TBK) is eroding. In the late, during, and the early 1800s, there was an increase in research related to dye species, and this allowed the development of industry and economy in rural contexts of Southern Italy. Today, dyes are mainly obtained from synthetic products, and this leads to risks for human health related to pollution. Methods Starting from the literature, three catalogs of the dyeing species (plants, algae, fungi, and lichens) used in the Mediterranean Basin and mainly in Southern Italy have been created. Percentages of parts used and colors ext…

0106 biological sciencesCultural StudiesFloraHealth (social science)LichensEthnobotany01 natural sciencesMediterranean BasinFloristicsEthnobotany Dye plants Mediterranean Basin DatabaseDatabaseHuman healthAlgaelcsh:BotanyHumansLichenColoring AgentsbiologyAgroforestrySettore BIO/02 - Botanica SistematicaResearchFungilcsh:Other systems of medicinePlantsbiology.organism_classificationlcsh:RZ201-9990104 chemical scienceslcsh:QK1-989010404 medicinal & biomolecular chemistryGeographyKnowledgeComplementary and alternative medicineDye plantsItalyEthnobotanySettore BIO/03 - Botanica Ambientale E ApplicataPlant speciesMediterranean BasinGeneral Agricultural and Biological Sciences010606 plant biology & botanyJournal of Ethnobiology and Ethnomedicine
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Subcellular localization and purification of a p-hydroxyphenylpyruvate dioxygenase from cultured carrot cells and characterization of the correspondi…

1997

p-Hydroxyphenylpyruvate dioxygenase catalyses the transformation of p-hydroxyphenylpyruvate into homogentisate. In plants this enzyme has a crucial role because homogentisate is the aromatic precursor of all prenylquinones. Furthermore this enzyme was recently identified as the molecular target for new families of potent herbicides. In this study we examine precisely the localization of p-hydroxyphenylpyruvate dioxygenase activity within carrot cells. Our results provide evidence that, in cultured carrot cells, p-hydroxyphenylpyruvate dioxygenase is associated with the cytosol. Purification and SDS/PAGE analysis of this enzyme revealed that its activity is associated with a polypeptide of 4…

0106 biological sciencesDNA ComplementaryMolecular Sequence DataBiology4-Hydroxyphenylpyruvate Dioxygenase01 natural sciencesBiochemistry03 medical and health sciencesDioxygenaseComplementary DNA[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular Biology[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyAmino Acid SequenceCloning MolecularMolecular BiologyPeptide sequenceCells CulturedComputingMilieux_MISCELLANEOUS030304 developmental biologyHomogentisate 12-dioxygenase0303 health sciencesBase SequenceSequence Homology Amino AcidMolecular massDioxygenase activityNucleic acid sequenceCell BiologyMolecular biologyDaucus carotaBiochemistryElectrophoresis Polyacrylamide Gel4-Hydroxyphenylpyruvate dioxygenaseResearch ArticleChromatography LiquidSubcellular Fractions010606 plant biology & botany
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Individual-Based Tracking Systems in Ornithology: Welcome to the Era of Big Data

2016

Technological innovations have led to exciting fast-moving developments in science. Today, we are living in a technology-driven era of biological discovery. Consequently, tracking technologies have facilitated dramatic advances in the fundamental understanding of ecology and animal behaviour. Major technological improvements, such as the development of GPS dataloggers, geolocators and other bio-logging technologies, provide a volume of data that were hitherto unconceivable. Hence we can claim that ornithology has entered the era of big data. In this paper, which is particularly addressed to undergraduate students and starting researchers in the emerging field of movement ecology, I summaris…

0106 biological sciencesData processingComputer sciencebusiness.industryEcology (disciplines)Big dataTracking system010603 evolutionary biology01 natural sciencesData scienceField (computer science)010605 ornithologyEnvironmental dataData loggerOrnitologiaAnimal Science and ZoologyTracking (education)businessEcology Evolution Behavior and SystematicsArdeola
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Constitutive Activation of the Midgut Response to Bacillus thuringiensis in Bt-Resistant Spodoptera exigua

2010

Bacillus thuringiensis is the most effective microbial control agent for controlling numerous species from different insect orders. The main threat for the long term use of B. thuringiensis in pest control is the ability of insects to develop resistance. Thus, the identification of insect genes involved in conferring resistance is of paramount importance. A colony of Spodoptera exigua (Lepidoptera: Noctuidae) was selected for 15 years in the laboratory for resistance to Xentari (TM), a B. thuringiensis-based insecticide, reaching a final resistance level of greater than 1,000-fold. Around 600 midgut ESTs were analyzed by DNA-macroarray in order to find differences in midgut gene expression …

0106 biological sciencesDrug Resistancelcsh:MedicineGene ExpressionInsectaminopeptidase n01 natural sciencesAminopeptidasesHemolysin ProteinsEndotoxinmanduca-sextaBacillus thuringiensisInsect ProteinBiotechnology/Applied Microbiologylcsh:Scienceheliothis-virescensmedia_common0303 health sciencesLarvaMultidisciplinarybiologymediated insect resistanceGenetics and Genomics/Gene ExpressionEcology/Population Ecologybacterial-infectionNoctuidaeInsect ProteinsResearch Articlemedia_common.quotation_subjectAminopeptidaseMolecular Sequence DataBacillus thuringiensisBacterial ProteinSpodopteraSpodopterastem-cell proliferationMicrobiology03 medical and health sciencesMicrobiology/Applied MicrobiologyBacterial ProteinsExiguaBotanyBacillus thuringiensiAnimalscrystal proteinsBIOS Plant Development SystemsAmino Acid Sequencekinase pathways030304 developmental biologyposterior midgutHeliothis virescensBacillus thuringiensis ToxinsAnimaltrichoplusia-nilcsh:RfungiMidgutHemolysin Proteinbiology.organism_classificationEndotoxinsGastrointestinal Tract010602 entomologyPlant Biology/Agricultural Biotechnologylcsh:QSequence Alignment
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A novel method to predict dark diversity using unconstrained ordination analysis

2019

[Questions] Species pools are the product of complex ecological and evolutionary mechanisms, operating over a range of spatial scales. Here, we focus on species absent from local sites but with the potential to establish within communities — known as dark diversity. Methods for estimating dark diversity are still being developed and need to be compared, as well as tested for the type, and amount, of reference data needed to calibrate these methods. [Location] South Bohemia (48°58′ N, 14°28′ E) and Železné Hory (49°52′ N, 15°34′ E), Czech Republic. [Method] We compared a widely accepted algorithm to estimate species pools (Beals smoothing index, based on species co-occurrence) against a nove…

0106 biological sciencesEcologyReference data (financial markets)Species poolCommunity structureBeals smoothing indexPlant Science010603 evolutionary biology01 natural sciencesCommunity structureEllenberg valuesUnconstrained ordinationCommon speciesDark diversityStatisticsRange (statistics)OrdinationScale (map)Nested sampling algorithmSmoothing010606 plant biology & botanyMathematics
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A new algorithm for the identification of dives reveals the foraging ecology of a shallow-diving seabird using accelerometer data

2017

International audience; The identification of feeding events is crucial to our understanding of the foraging ecology of seabirds. Technology has made small devices, such as time-depth recorders (TDRs) and accelerometers available. However, TDRs might not be sensitive enough to identify shallow dives, whereas accelerometers might reveal more subtle behaviours at a smaller temporal scale. Due to the limitations of TDRs, the foraging ecology of many shallow-diving seabirds has been poorly investigated to date. We thus developed an algorithm to identify dive events in a shallow-diving seabird species, the Scopoli’s shearwater, using only accelerometer data. The accuracy in the identification of…

0106 biological sciencesEcologybiologyEcology010604 marine biology & hydrobiologyEcology (disciplines)ForagingAquatic Sciencebiology.organism_classification010603 evolutionary biology01 natural sciencesShearwaterCalonectris diomedea foraging divingSettore AGR/11 - Entomologia Generale E Applicatabiology.animal[SDE]Environmental Sciences14. Life underwaterAccelerometer dataSeabirdAlgorithmEcology Evolution Behavior and Systematics
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Integrating spatial management measures into fisheries: The Lepidorhombus spp. case study

2020

Most fisheries management systems rely on a set of regulatory measures to achieve desired objectives. Controls on catch and effort are usually supplemented with gear restrictions, minimum landing sizes, and in the framework of the new common fisheries policy, limitation of discards and by-catch. However, the increasing use of spatial management measures such as conservation areas or spatial and temporal area closures faces new challenges for fishery managers. Here we present an integrated spatial framework to identify areas in which undersized commercial species are more abundant. Once these areas are identified they could be avoided by fishers, minimizing the fishing impact over the immatu…

0106 biological sciencesEconomics and EconometricsCentro Oceanográfico de SantanderFishingManagement Monitoring Policy and LawAquatic Science01 natural sciencesEnvironmental dataIntegrated fishery managementMedio MarinoUndersized fishBayesian modelsGeneral Environmental Sciencefishbiology010604 marine biology & hydrobiologySensitive areas04 agricultural and veterinary sciencesbiology.organism_classificationDiscardsFisheryLepidorhombusGeographyDiscardsocean policySpatial managementLanding obligation040102 fisheriesSpatial ecology0401 agriculture forestry and fisheriesFisheries managementMegrimecologyLaw
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