Search results for " DUP"

Whole mirror duplication-random loss model and pattern avoiding permutations

2010

International audience; In this paper we study the problem of the whole mirror duplication-random loss model in terms of pattern avoiding permutations. We prove that the class of permutations obtained with this model after a given number p of duplications of the identity is the class of permutations avoiding the alternating permutations of length p2+1. We also compute the number of duplications necessary and sufficient to obtain any permutation of length n. We provide two efficient algorithms to reconstitute a possible scenario of whole mirror duplications from identity to any permutation of length n. One of them uses the well-known binary reflected Gray code (Gray, 1953). Other relative mo…

Population Structure and Comparative Genome Hybridization of European Flor Yeast Reveal a Unique Group of Saccharomyces cerevisiae Strains with Few G…

2014

Wine biological aging is a wine making process used to produce specific beverages in several countries in Europe, including Spain, Italy, France, and Hungary. This process involves the formation of a velum at the surface of the wine. Here, we present the first large scale comparison of all European flor strains involved in this process. We inferred the population structure of these European flor strains from their microsatellite genotype diversity and analyzed their ploidy. We show that almost all of these flor strains belong to the same cluster and are diploid, except for a few Spanish strains. Comparison of the array hybridization profile of six flor strains originating from these four co…

"Nous ne sommes ni vos élèves ni vos amis". Charles Dupin face à la presse ouvrière sous la Monarchie de juillet (1830-1848)

2009

International audience

Neuroglobin, cytoglobin, and a novel, eye-specific globin from chicken

2004

Neuroglobin and cytoglobin are two recently discovered respiratory proteins of vertebrates. Here we report the first identification and expression analyses of these proteins in bird species. Neuroglobin from the domestic chicken Gallus gallus differs in approximately 30% from the mammalian proteins, but its genome structure shows the conservation of the B12.2, E11.0, and G7.0 intron positions. The chicken cytoglobin protein is shorter than the mammalian orthologs, from which it differs overall by approximately 25%, due to the absence of the C-terminal exon in the gene. Comparison of chicken and mammalian gene order shows that neuroglobin and cytoglobin are located on conserved syntenic chro…

Duplicated cytoglobin genes in teleost fishes

2005

Cytoglobin is a recently discovered myoglobin-related O2-binding protein of vertebrates with uncertain function. It occurs as single-copy gene in mammals. Here, we demonstrate the presence of two paralogous cytoglobin genes (Cygb-1 and Cygb-2) in the teleost fishes Danio rerio, Oryzias latipes, Tetraodon nigroviridis, and Takifugu rubripes. The globin-typical introns at positions B12.2 and G7.0 are conserved in both genes, whereas the C-terminal exon found in mammalian cytoglobin is absent in the fish genes. Phylogenetic analyses show that the two cytoglobin genes diverged early in teleost evolution. This is confirmed by gene synteny analyses, which suggest a large-scale duplication event. …

Le score de propension : un guide méthodologique pour les recherches expérimentales et quasi expérimentales en éducation

2016

La méthode du score de propension devient de plus en plus populaire pour estimer les effets causaux d’un programme d’intervention. Si les applications empiriques de cette méthode sont encore rares dans les recherches en éducation, des exemples de son utilisation se trouvent aisément dans d’autres disciplines. Cependant, sa mise en place soulève plusieurs questions. L’objectif de cet article est de fournir des éléments de réponses guidant le chercheur et l’évaluateur du domaine de l’éducation pour l’estimation et l’utilisation du score de propension. Les différentes étapes de son application sont présentées pas à pas : évaluation du biais de sélection, construction du score de propension et …

The Putative Metal Coordination Motif in the Endonuclease Domain of Human Parvovirus B19 NS1 Is Critical for NS1 Induced S Phase Arrest and DNA Damage

2011

The non-structural proteins (NS) of the parvovirus family are highly conserved multi-functional molecules that have been extensively characterized and shown to be integral to viral replication. Along with NTP-dependent helicase activity, these proteins carry within their sequences domains that allow them to bind DNA and act as nucleases in order to resolve the concatameric intermediates developed during viral replication. The parvovirus B19 NS1 protein contains sequence domains highly similar to those previously implicated in the above-described functions of NS proteins from adeno-associated virus (AAV), minute virus of mice (MVM) and other non-human parvoviruses. Previous studies have show…

Lipocalins in Arthropod Chemical Communication.

2021

Abstract Lipocalins represent one of the most successful superfamilies of proteins. Most of them are extracellular carriers for hydrophobic ligands across aqueous media, but other functions have been reported. They are present in most living organisms including bacteria. In animals they have been identified in mammals, molluscs, and arthropods; sequences have also been reported for plants. A subgroup of lipocalins, referred to as odorant-binding proteins (OBPs), mediate chemical communication in mammals by ferrying specific pheromones to the vomeronasal organ. So far, these proteins have not been reported as carriers of semiochemicals in other living organisms; instead chemical communicatio…

Duplication cycle in nuclei of germinating zoospores of Phytophthora drechsleri as revealed by DAPI staining

1982

Detection of Duplicated Regions in Tampered Digital Images by Bit-Plane Analysis

2009

In this paper we present a new method for searching duplicated areas in a digital image. The goal is to detect if an image has been tampered by a copy-move process. Our method works within a convenient domain. The image to be analyzed is decomposed in its bit-plane representation. Then, for each bitplane, block of bits are encoded with an ASCII code, and a sequence of strings is analyzed rather than the original bit-plane. The sequence is lexicographically sorted and similar groups of bits are extracted as candidate areas, and passed to the following plane to be processed. Output of the last planes indicates if, and where, the image has been altered.