Search results for " Homology"

showing 10 items of 633 documents

Negative Regulation of β Enolase Gene Transcription in Embryonic Muscle Is Dependent upon a Zinc Finger Factor That Binds to the G-rich Box within th…

1998

We have previously identified a muscle-specific enhancer within the first intron of the human beta enolase gene. Present in this enhancer are an A/T-rich box that binds MEF-2 protein(s) and a G-rich box (AGTGGGGGAGGGGGCTGCG) that interacts with ubiquitously expressed factors. Both elements are required for tissue-specific expression of the gene in skeletal muscle cells. Here, we report the identification and characterization of a Kruppel-like zinc finger protein, termed beta enolase repressor factor 1, that binds in a sequence-specific manner to the G-rich box and functions as a repressor of the beta enolase gene transcription in transient transfection assays. Using fusion polypeptides of b…

AgingTranscription GeneticMolecular Sequence DataDown-RegulationRepressorRegulatory Sequences Nucleic AcidBiologyBiochemistryDNA-binding proteinGene Expression Regulation EnzymologicMiceGene expressionAnimalsHumansAmino Acid SequenceCloning MolecularMuscle SkeletalEnhancerMolecular BiologyCell NucleusRegulation of gene expressionZinc fingerSp1 transcription factorBinding SitesSequence Homology Amino AcidZinc FingersCell BiologyMolecular biologyDNA-Binding ProteinsEnhancer Elements GeneticRegulatory sequencePhosphopyruvate HydrataseJournal of Biological Chemistry
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Regulation of the effects of CYP2E1-induced oxidative stress by JNK signaling

2014

The generation of excessive amounts of reactive oxygen species (ROS) leads to cellular oxidative stress that underlies a variety of forms of hepatocyte injury and death including that from alcohol. Although ROS can induce cell damage through direct effects on cellular macromolecules, the injurious effects of ROS are mediated largely through changes in signal transduction pathways such as the mitogen-activated protein kinase c-Jun N-terminal kinase (JNK). In response to alcohol, hepatocytes have increased levels of the enzyme cytochrome P450 2E1 (CYP2E1) which generates an oxidant stress that promotes the development of alcoholic steatosis and liver injury. These effects are mediated in larg…

Alcoholic liver diseaseClinical BiochemistryReview ArticleMitogen-activated protein kinase kinasemedicine.disease_causeBiochemistryCytochrome P450 2E10302 clinical medicineMolecular Targeted TherapyMitogen-activated protein kinaseslcsh:QH301-705.5c-Jun N-terminal kinasechemistry.chemical_classificationTNF tumor necrosis factorlcsh:R5-9200303 health sciencesCell DeathCYP2E1 cytochrome P450 2E1Cytochrome P-450 CYP2E13. Good healthCell biologyPKD protein kinase DLiverJNK c-Jun N-terminal kinaseSab SH3 homology associated BTK binding protein030211 gastroenterology & hepatologySignal transductionlcsh:Medicine (General)MAP Kinase Signaling SystemAPAP acetaminophenMKK MAPK kinaseBiology03 medical and health sciencesROS reactive oxygen speciesPKC protein kinase CmedicineAnimalsHumansMAPKKK MAPK kinase kinaseProtein kinase ACell damage030304 developmental biologyReactive oxygen speciesMAP kinase kinase kinaseOrganic ChemistryJNK Mitogen-Activated Protein KinasesAlcoholic liver diseasemedicine.diseaseERK1/2 extracellular signal-regulated kinase 1/2Fatty Liverlcsh:Biology (General)chemistryOxidative stressNAFLD nonalcoholic fatty liver diseaseReactive Oxygen SpeciesMAPK mitogen-activated protein kinaseOxidative stressRedox Biology
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Obstruction theory in action accessible categories

2013

Abstract We show that, in semi-abelian action accessible categories (such as the categories of groups, Lie algebras, rings, associative algebras and Poisson algebras), the obstruction to the existence of extensions is classified by the second cohomology group in the sense of Bourn. Moreover, we describe explicitly the obstruction to the existence of extensions in the case of Leibniz algebras, comparing Bourn cohomology with Loday–Pirashvili cohomology of Leibniz algebras.

Algebra and Number TheoryGroup (mathematics)Accessible categoryAction accessible categorieObstruction theoryMathematics::Algebraic TopologyAction accessible categoriesCohomologyAction (physics)Action accessible categories; Leibniz algebras; Obstruction theoryLeibniz algebraAlgebraSettore MAT/02 - AlgebraMathematics::K-Theory and HomologyMathematics::Category TheoryLie algebraObstruction theoryLeibniz algebrasAssociative propertyObstruction theorymatMathematics
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The Abel–Jacobi map for higher Chow groups

2006

We construct a map between Bloch's higher Chow groups and Deligne homology for smooth, complex quasiprojective varieties on the level of complexes. For complex projective varieties this results in a formula which generalizes at the same time the classical Griffiths Abel–Jacobi map and the Borel/Beilinson/Goncharov regulator type maps.

AlgebraDeligne cohomologyPure mathematicsMathematics::Algebraic GeometryAlgebra and Number TheoryMathematics::K-Theory and HomologyHomology (mathematics)Chow ringMathematicsCompositio Mathematica
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Pseudodifferential Analysis on Manifolds with Boundary — a Comparison of b-Calculus and Cone Algebra

2001

We establish a relation between two different approaches to a complete pseudodifferential analysis of totally characteristic or Fuchs type operators on compact manifolds with boundary respectively conical singularities: Melrose’s (overblown) b-calculus and Schulze’s cone algebra. Though quite different in their definition, we show that these two pseudodifferential calculi basically contain the same operators.

AlgebraGlobal analysisCone (topology)Mathematics::K-Theory and HomologyRicci-flat manifoldBoundary (topology)Gravitational singularityConical surfaceMathematics::Spectral TheoryType (model theory)MathematicsPoisson algebra
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The module structure of Hochschild homology in some examples

2008

Abstract In this Note we give a simple proof of a conjecture by A. Caldararu stating the compatibility between the modified Hochschild–Kostant–Rosenberg isomorphism and the action of Hochschild cohomology on Hochschild homology in the case of Calabi–Yau manifolds and smooth projective curves. To cite this article: E. Macri` et al., C. R. Acad. Sci. Paris, Ser. I 346 (2008).

AlgebraPure mathematicsConjectureHochschild homologyMathematics::K-Theory and HomologyMathematics::Quantum AlgebraModuloMathematics::Differential GeometryGeneral MedicineMathematics::Algebraic TopologyMathematics::Symplectic GeometryCohomologyMathematicsComptes Rendus Mathematique
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Kontsevich formality and cohomologies for graphs

2004

A formality on a manifold M is a quasi isomorphism between the space of polyvector fields (Tpoly(M)) and the space of multidifferential operators (Dpoly(M)). In the case M=R d , such a mapping was explicitly built by Kontsevich, using graphs drawn in configuration spaces. Looking for such a construction step by step, we have to consider several cohomologies (Hochschild, Chevalley, and Harrison and Chevalley) for mappings defined on Tpoly. Restricting ourselves to the case of mappings defined with graphs, we determine the corresponding coboundary operators directly on the spaces of graphs. The last cohomology vanishes.

AlgebraPure mathematicsMathematics::K-Theory and HomologyMathematics::Quantum AlgebraComplex systemStatistical and Nonlinear PhysicsQuasi-isomorphismFormalitySpace (mathematics)Mathematical PhysicsCohomologyManifoldMathematicsLetters in Mathematical Physics
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Quantum Groups, Star Products and Cyclic Cohomology

1993

After some historical remarks, we start with a rapid overview of the star-product theory (deformation of algebras of functions on phase space) and its applications to deformation-quantization. We then concentrate on Poisson-Lie groups and their “quantization”, give a star-product realization of quantum groups and discuss uniqueness and the rigidity as bialgebra of a universal model for the quantum SL(2) groups. In the last part we develop the notion of closed star-product (for which a trace can be defined on the algebra), show that it is classified by cyclic cohomology, permits to define a character and that there always exists one; finally we show that the pseudodifferential calculus on a …

AlgebraStar productPhase spaceCyclic homologyUniquenessRiemannian manifoldQuantumAtiyah–Singer index theoremMathematicsBialgebra
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Common genetic denominators for Ca++-based skeleton in Metazoa: role of osteoclast-stimulating factor and of carbonic anhydrase in a calcareous spong…

2012

Calcium-based matrices serve predominantly as inorganic, hard skeletal systems in Metazoa from calcareous sponges [phylum Porifera; class Calcarea] to proto- and deuterostomian multicellular animals. The calcareous sponges form their skeletal elements, the spicules, from amorphous calcium carbonate (ACC). Treatment of spicules from Sycon raphanus with sodium hypochlorite (NaOCl) results in the disintegration of the ACC in those skeletal elements. Until now a distinct protein/enzyme involved in ACC metabolism could not been identified in those animals. We applied the technique of phage display combinatorial libraries to identify oligopeptides that bind to NaOCl-treated spicules: those oligop…

Anatomy and PhysiologyMarine and Aquatic Scienceslcsh:MedicineBiochemistryCalcium Chloridechemistry.chemical_compoundMolecular Cell BiologySycon raphanuslcsh:ScienceCarbonic AnhydrasesSclerocytechemistry.chemical_classification0303 health sciencesMultidisciplinaryCalcareous spongebiology030302 biochemistry & molecular biologyIntracellular Signaling Peptides and ProteinsRecombinant ProteinsAmorphous calcium carbonatePoriferaEnzymesChemistrymedicine.anatomical_structureBiochemistryMedicineOligopeptidesResearch ArticleBiotechnologyDNA ComplementaryMolecular Sequence DataMarine BiologyCalcium Carbonate03 medical and health sciencesSponge spiculeOsteoclastCarbonic anhydraseChemical BiologymedicineAnimalsAmino Acid SequenceBiology030304 developmental biologySequence Homology Amino AcidEvolutionary Developmental Biologylcsh:Rbiology.organism_classificationEnzymechemistryEarth Sciencesbiology.proteinCalciumlcsh:QPeptidesPhysiological ProcessesDevelopmental BiologyPLoS ONE
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Contribution of sponge genes to unravel the genome of the hypothetical ancestor of Metazoa (Urmetazoa)

2001

Recently the term Urmetazoa, as the hypothetical metazoan ancestor, was introduced to highlight the finding that all metazoan phyla including the Porifera (sponges) are derived from one common ancestor. Sponges as the evolutionarily oldest, still extant phylum, are provided with a complex network of structural and functional molecules. Analyses of sponge genomes from Demospongiae (Suberites domuncula and Geodia cydonium), Calcarea (Sycon raphanus) and Hexactinellida (Aphrocallistes vastus) have contributed also to the reconstruction of the evolutionary position of Metazoa with respect to Fungi. Furthermore, these analyses have provided evidence that the characteristic evolutionary novelties…

AnkyrinsMolecular Sequence DataReceptors Cell SurfaceEvolution MolecularGeneticsMelanogasterAnimalsHumansAmino Acid SequenceViridiplantaeSycon raphanusPhylogenyCaenorhabditis elegansGeneticsGenomeSequence Homology Amino AcidbiologyPhylumImmunityGeneral Medicinebiology.organism_classificationPoriferaSuberites domunculaSpongeGenesHomo sapiensGene
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