Search results for " Inbreeding"
showing 10 items of 21 documents
High-density single nucleotide polymorphism markers reveal the population structure of 2 local chicken genetic resources
2023
Italy counts a large number of local chicken populations, some without a recognized genetic structure, such as Val Platani (VPL) and Cornuta (COS), which represent noteworthy local genetic resources. In this study, the genotype data of 34 COS and 42 VPL, obtained with the Affymetrix Axiom600KChicken Genotyping Array, were used with the aim to investigate the genetic diversity, the runs of homozygosity (ROH) pattern, as well as the population structure and relationship within the framework of other local Italian and commercial chickens. The genetic diversity indices, estimated using different approaches, displayed moderate levels of genetic diversity in both populations. The identified ROH h…
A genome-wide perspective on the population structure of Italian cattle breeds
2018
Despite the growing diffusion of cosmopolite specialized breeds, several autochthonous cattle breeds and populations are still bred in Italy. The aim of this study was to provide a high-resolution picture of the genome-wide diversity and population structure of Italian local cattle breeds using medium-density genome-wide SNP markers. After data editing, the dataset included 800 samples from 32 breeds that were genotyped for 31 013 SNPs. For several breeds we observed a low level of polymorphism and genetic diversity, that together with the small effective population sizes confirmed threat of extinction. According to the runs of homozygosity analysis, evidence of recent inbreeding was strong…
Show me your tail, if you have one! Is inbreeding depression occurring in wildcats (Felis silvestris silvestris) from Italy?
2022
Knowledge of genetic diversity is important to wildlife conservation because genetically depleted populations experience an increased risk of extinction. Mammalian carnivores are characterized by small and fragmented populations and low dispersal, so that genetic erosion can lead to the fixation of deleterious genes relatively quickly, leading to morphological abnormalities. Kinked tails and cowlicks are indicative of inbreeding depression and have been described in two wild cat species so far, the puma (Puma concolor) and the cheetah (Acinonyx jubatus). Here we report the first records of morphological abnormalities in five populations of the European wildcat (Felis silvestris silvestris) …
Runs of homozygosity in the Italian goat breeds: impact of management practices in low-input systems
2021
Abstract Background Climate and farming systems, several of which are considered as low-input agricultural systems, vary between goat populations from Northern and Southern Italy and have led to different management practices. These processes have impacted genome shaping in terms of inbreeding and regions under selection and resulted in differences between the northern and southern populations. Both inbreeding and signatures of selection can be pinpointed by the analysis of runs of homozygosity (ROH), which provides useful information to assist the management of this species in different rural areas. Results We analyzed the ROH distribution and inbreeding (FROH) in 902 goats from the Italia…
Genética de la conservación: la aplicación de los conceptos de la evolución a la conservación de la diversidad biológica
2013
La comprensión de las fuerzas de cambio evolutivo que actúan sobre las poblaciones, en conjunción con las técnicas más modernas de análisis genético, lleva aplicándose en los últimos veinte años al servicio de la conservación de la biodiversidad. Esta nueva aplicación de la genética ha recibido el nombre de genética de la conservación.
BOVITA: a first overview on genome-wide genetic diversity of Italian autochthonous cattle breeds
2017
Demographic characterization and genetic variability of the Girgentana goat breed by the analysis of genealogical data
2004
The aim of this paper is to present an overview of the actual Sicilian Girgentana population structure by the analysis ofgenealogical data. Statistics show that in 1983 the population consisted of 30,000 Girgentana goats; ten years lateralmost 98% of the entire Girgentana population disappeared. The remaining population consists of 461 individuals (134males and 327 females), with 368 living animals. The effective population size is 380 individuals. The inbreeding rate pergeneration was equal to 0.13%. The average estimated inbreeding level within the living male population was equal to0.8% (0-15%); and the average inbreeding level within the living female population was equal to 0.7% (0-31%…
Moviments de dispersió en els primats. Variabilitat en els seus patrons i causes
2014
Els moviments de dispersió en els animals representen decisions crucials per als individus, ja que afecten la seua supervivència i èxit reproductiu, a més de ser un component important de la dinàmica poblacional. En aquest article es descriu la variabilitat en els patrons de dispersió en els primats i algunes de les causes, tant últimes com proximals, a les quals respon.
Genomic inbreeding estimation in small populations: evaluation of runs of homozygosity in local cattle breeds
2015
The availability of high throughput genotyping has facilitated the quantification of inbreeding by genomic markers in farm animals. Run of homozygosity (ROH) are contiguous lengths of homozygous genotypes and represent an estimate of the degree of autozygosity at genome-wide level. The current study aims to quantify the genomic inbreeding derived from ROH (FROH) in three Italian local cattle breeds. Individuals of Cinisara (71), Modicana (72), Reggiana (168) were genotyped with the 50K v2 Illumina BeadChip. Genotypes from 96 animals of the Italian Holstein cattle breed were included in the analysis. The following criteria were used to define a ROH: two missing SNPs; one heterozygous SNP; mi…
¿Me voy o me quedo? Factores que influyen en la decisión de abandonar el lugar de nacimiento.
2014
Múltiples factores influyen en la decisión de dispersarse y en cuándo iniciar la dispersión, y su estudio proporciona evidencias de las causas y los determinantes de la dispersión. Los animales abandonan el lugar de nacimiento para dar solución a tres problemas fundamentales: pérdida de calidad del hábitat, competencia por los recursos, y riesgo de consanguinidad. La dispersión, sin embargo, no se lleva a cabo hasta que los individuos alcanzan una condición física adecuada, que permita alcanzar con éxito un nuevo lugar de asentamiento.