Search results for " Logic"
showing 10 items of 1720 documents
Subjective Logic-Based In-Network Data Processing for Trust Management in Collocated and Distributed Wireless Sensor Networks
2018
While analyzing an explosive amount of data collected in today’s wireless sensor networks (WSNs), the redundant information in the sensed data needs to be handled. In-network data processing is a technique which can eliminate or reduce such redundancy, leading to minimized resource consumption. On the other hand, trust management techniques establish trust relationships among nodes and detect unreliable nodes. In this paper, we propose two novel in-network data processing schemes for trust management in static WSNs. The first scheme targets at networks, where sensor nodes are closely collocated to report the same event. Considering both spatial and temporal correlations, this scheme generat…
Two novel subjective logic-based in-network data processing schemes in wireless sensor networks
2016
Wireless sensor networks (WSNs) consist of connected low-cost and small-size sensor nodes. The sensor nodes are characterized by various limitations, such as energy availability, processing power, and storage capacity. Typically, nodes collect data from an environment and transmit the raw or processed data to a sink. However, the collected data contains often redundant information. An in-network processing scheme attempts to eliminate or reduce such redundancy in sensed data. In this paper, we propose two in-network data processing schemes for WSNs, which are built based on a lightweight algebra for data processing. The schemes bring also benefits like decreased network traffic load and inc…
"The human use of human beings": Interdisciplinarity, transdisciplinarity and all that in biophysics and beyond.
2017
Abstract Biophysics, just by looking at its name, indicates an interdisciplinary scientific activity, although the notion of interdisciplinarity, as such, seems to be not widely or specifically discussed by biophysicists. The same seems to have happened as well in the early stages of the development of cybernetics, notably in Norbert Wiener's writings. This situation seems to contrast with what has happened in subsequent developments of cybernetics ideas, notably in general system theory and cognitive sciences. After a few general reflections on the notion of interdisciplinarity, its sophisticated variants and the path leading to the birth of cognitive science, we shall refer to Wiener's th…
miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal
2017
Abstract Hundreds of bioinformatics tools have been developed for MicroRNA (miRNA) investigations including those used for identification, target prediction, structure and expression profile analysis. However, finding the correct tool for a specific application requires the tedious and laborious process of locating, downloading, testing and validating the appropriate tool from a group of nearly a thousand. In order to facilitate this process, we developed a novel database portal named miRToolsGallery. We constructed the portal by manually curating > 950 miRNA analysis tools and resources. In the portal, a query to locate the appropriate tool is expedited by being searchable, filterable and …
Probing the operability regime of an engineered ribocomputing unit in terms of dynamic range maintenance with extracellular changes and time
2020
Synthetic biology aims at engineering gene regulatory circuits to end with cells (re)programmed on purpose to implement novel functions or discover natural behaviors. However, one overlooked question is whether the resulting circuits perform as intended in variety of environments or with time. Here, we considered a recently engineered genetic system that allows programming the cell to work as a minimal computer (arithmetic logic unit) in order to analyze its operability regime. This system involves transcriptional and post-transcriptional regulations. In particular, we studied the analog behavior of the system, the effect of physicochemical changes in the environment, the impact on cell gro…
High-Performance Biocomputing in Synthetic Biology-Integrated Transcriptional and Metabolic Circuits
2019
Biocomputing uses molecular biology parts as the hardware to implement computational devices. By following pre-defined rules, often hard-coded into biological systems, these devices are able to process inputs and return outputs-thus computing information. Key to the success of any biocomputing endeavor is the availability of a wealth of molecular tools and biological motifs from which functional devices can be assembled. Synthetic biology is a fabulous playground for such purpose, offering numerous genetic parts that allow for the rational engineering of genetic circuits that mimic the behavior of electronic functions, such as logic gates. A grand challenge, as far as biocomputing is concer…
Automatic monitoring system for the detection and evaluation of the evolution of hemangiomas
2016
In this paper we introduce an automatic monitoring system for the detection and the evaluation of the evolution of hemangiomas using a fuzzy logic system based on two parameters: area and redness. We have considered pairs of images (from two different moments in time) that show hemangiomas either evolving, stationary or regressing. The starting points of the algorithm are the rectangular regions of interest (ROI), manually selected for each of the two images, and automatically segmented using Fuzzy C-means. Using the area and the redness of the hemagiomas extracted with Fuzzy C-means, for the same patient, at different moments of time, the algorithm decides whether the hemangioma is evolvin…
On the structural connectivity of large-scale models of brain networks at cellular level
2021
AbstractThe brain’s structural connectivity plays a fundamental role in determining how neuron networks generate, process, and transfer information within and between brain regions. The underlying mechanisms are extremely difficult to study experimentally and, in many cases, large-scale model networks are of great help. However, the implementation of these models relies on experimental findings that are often sparse and limited. Their predicting power ultimately depends on how closely a model’s connectivity represents the real system. Here we argue that the data-driven probabilistic rules, widely used to build neuronal network models, may not be appropriate to represent the dynamics of the …
Towards Self-explanatory Ontology Visualization with Contextual Verbalization
2016
Ontologies are one of the core foundations of the Semantic Web. To participate in Semantic Web projects, domain experts need to be able to understand the ontologies involved. Visual notations can provide an overview of the ontology and help users to understand the connections among entities. However, the users first need to learn the visual notation before they can interpret it correctly. Controlled natural language representation would be readable right away and might be preferred in case of complex axioms, however, the structure of the ontology would remain less apparent. We propose to combine ontology visualizations with contextual ontology verbalizations of selected ontology (diagram) e…
An effective extension of the applicability of alignment-free biological sequence comparison algorithms with Hadoop
2016
Alignment-free methods are one of the mainstays of biological sequence comparison, i.e., the assessment of how similar two biological sequences are to each other, a fundamental and routine task in computational biology and bioinformatics. They have gained popularity since, even on standard desktop machines, they are faster than methods based on alignments. However, with the advent of Next-Generation Sequencing Technologies, datasets whose size, i.e., number of sequences and their total length, is a challenge to the execution of alignment-free methods on those standard machines are quite common. Here, we propose the first paradigm for the computation of k-mer-based alignment-free methods for…