Search results for " Modeling"
showing 10 items of 2411 documents
Shedding Light on the Dark Ages: Sketching Potential Trade Relationships in Early Medieval Romania through Mitochondrial DNA Analysis of Sheep Remains
2021
Southeast Europe has played an important role in shaping the genetic diversity of sheep due to its proximity to the Danubian route of transport from the Near East into Europe, as well as its possible role as a post-domestication migration network and long tradition of sheep breeding. The history of Romania and, in particular, the historical province of Dobruja, located on the shore of the Black Sea, has been influenced by its geographical position at the intersection between the great powers of the Near East and mainland Europe, with the Middle Ages being an especially animated time in terms of trade, migration, and conflict. In this study, we analyzed the mitochondrial control region of fi…
Urban Storm-Water Quality Management: Centralized versus Source Control
2010
The continuous growth of urban areas and the increasing public awareness of the environmental impacts of storm water have raised interest on the quality of the receiving water bodies. In the past two decades, many efforts have been directed at improving urban drainage systems by introducing mitigation measures to limit the negative environmental impacts of storm water. These mitigation measures are generally called best management practices (BMPs), sustainable urban drainage systems, or low impact developments, and they include practices such as infiltration and storage tanks that reduce the peak flow and retain some of the polluting materials. Choosing the best mitigation measure is still …
Quality Improvement Based on Big Data Analysis
2016
Big data analysis has become an important trend in computer science. Quality improvement is a constant in current industry trends. In this paper, we present an idea of quality improvement based on big data analysis with the aid of linked data and ontologies in order to implement it in the case of automotive parts production. We consider defective automotive products and try to find the best refurbishment solution for them considering their characteristics. Moreover, we propose to develop a recommender system that is able to give recommendations in order to prevent or to alleviate defects and to provide insights for possible causes that led to these defective parts. This study intends to hel…
Homology modeling of an RNP domain from a human RNA-binding protein: Homology-constrained energy optimization provides a criterion for distinguishing…
1998
We have recently described an automated approach for homology modeling using restrained molecular dynamics and simulated annealing procedures (Li et al, Protein Sci., 6:956-970,1997). We have employed this approach for constructing a homology model of the putative RNA-binding domain of the human RNA-binding protein with multiple splice sites (RBP-MS). The regions of RBP-MS which are homologous to the template protein snRNP U1A were constrained by "homology distance constraints," while the conformation of the non-homologous regions were defined only by a potential energy function. A full energy function without explicit solvent was employed to ensure that the calculated structures have good …
Analytical and Numerical Investigation of 3D Multilayer Detachment Folding
2013
Multilayer detachment folding, in which a sequence of sedimentary layers is compressed above a weaker salt layer, is a common mode of deformation in thin-skinned fold-and-thrust belts. Here, we investigate the dynamics of multilayer detachment folding with three different viscosities: lower detachment or salt layer, overlying weak layers and competent layers. A semi-analytical solution, based on thick plate analysis of multilayer systems, is used to create mechanical phase diagrams of folding dominant wavelength and growth rate as a function of material parameters. The validity of the phase diagrams is tested and confirmed beyond the nucleation stages of folding by performing several 2D and…
Interface and Surface Properties of Short Polymers in Solution: Monte Carlo Simulations and Self-Consistent Field Theory
2000
We investigate the structure and thermodynamics of inhomogeneous polymer solutions in the framework of a coarse-grained off-lattice model. Properties of the liquidvapor interface and the packing of...
Monte Carlo simulations of polymer dynamics: Recent advances
1997
A brief review is given of applications of Monte Carlo simulations to study the dynamical properties of coarse-grained models of polymer melts, emphasizing the crossover from the Rouse model toward reptation, and the glass transition. The extent to which Monte Carlo algorithms can mimic the actual chain dynamics is critically examined, and the need for the use of coarse-grained rather than fully atomistic models for such simulations is explained. It is shown that various lattice and continuum models yield qualitatively similar results, and the behavior agrees with the findings of corresponding molecular dynamics simulations and experiments, where available. It is argued that these simulatio…
Modeling of interactions between xenobiotics and cytochrome P450 (CYP) enzymes
2015
The adverse effects to humans and environment of only few chemicals are well known. Absorption, distribution, metabolism, and excretion (ADME) are the steps of pharmaco/toxicokinetics that determine the internal dose of chemicals to which the organism is exposed. Of all the xenobiotic-metabolizing enzymes, the cytochrome P450 (CYP) enzymes are the most important due to their abundance and versatility. Reactions catalyzed by CYPs usually turn xenobiotics to harmless and excretable metabolites, but sometimes an innocuous xenobiotic is transformed into a toxic metabolite. Data on ADME and toxicity properties of compounds are increasingly generated using in vitro and modeling (in silico) tools.…
Two-dimensional model colloids and nano wires: phase transitions, effects of external potentials and quantum effects
2005
Abstract Quantum effects, structures and phase transitions in Nano-systems have been analyzed. An overview is given on the results of our computations on structural and elastic properties of model colloids, on phase transitions of model colloids in external fields, and on structural and electronic properties of stretched atomic wires.
Proposal of a neuro-fuzzy model of a WWW server
2005
This paper presents the ways of designing simulation models of Web servers. At the beginning queuing network models are introduced, those models are generally known and often used in the initial phase of research on particular technical solutions. Next, an entirely new approach to the issue discussed is presented - neuro-fuzzy models, thanks to which, it is possible to automate the process of designing simulation models. The results of comparative tests of these two models are presented. Based on these results it can be concluded that neuro-fuzzy models are accurate and can be used in simulation research.