Search results for " Order"
showing 10 items of 827 documents
Nonlinear contractions involving simulation functions in a metric space with a partial order
2015
Very recently, Khojasteh, Shukla and Radenovic [F. Khojasteh, S. Shukla, S. Radenovic, Filomat, 29 (2015), 1189-1194] introduced the notion of Z-contraction, that is, a nonlinear contraction involving a new class of mappings namely simulation functions. This kind of contractions generalizes the Banach contraction and unifies several known types of nonlinear contractions. In this paper, we consider a pair of nonlinear operators satisfying a nonlinear contraction involving a simulation function in a metric space endowed with a partial order. For this pair of operators, we establish coincidence and common fixed point results. As applications, several related results in fixed point theory in a …
Fair Transfer Prices of Global Supply Chains in the Process Industry
2016
This work addresses the optimisation of transfer prices for the fair profit distribution among the members involved in a global supply chain in the process industry. A mixed integer linear programming (MILP) model is developed for production and distribution planning of global supply chains, where the optimal transfer prices of products between plants and markets are determined. Two solution approaches are presented for fair solutions using Nash and lexicographic maximin principles. The applicability of the proposed models and approaches are demonstrated by an illustrative example. The results show that both approaches can fairly distribute the whole supply chain’s profit to the members.
The Changing Policies of International Institutions: Human Mobility in the Mediterranean
2022
The transition from a liberal international system to an alternative political world order makes state coalitions increasingly vulnerable. The transition also affects international institutions and international policy-making processes as well. Some international actors are becoming politically irrelevant, while other political actors are acquiring a more central role in the world political system. This chapter studies the transition in political order and its effects on the roles and policies of international institutions in a crucial sector: migration. The development of the International Organization for Migration (IOM), the Global Compact for Safe, Orderly and Regular Migration (GCM), a…
Platyzoan mitochondrial genomes.
2012
Platyzoa is a putative lophotrochozoan (spiralian) subtaxon within the protostome clade of Metazoa, comprising a range of biologically diverse, mostly small worm-shaped animals. The monophyly of Platyzoa, the relationships between the putative subgroups Platyhelminthes, Gastrotricha and Gnathifera (the latter comprising at least Gnathostomulida, "Rotifera" and Acanthocephala) as well as some aspects of the internal phylogenies of these subgroups are highly debated. Here we review how complete mitochondrial (mt) genome data contribute to these debates. We highlight special features of the mt genomes and discuss problems in mtDNA phylogenies of the clade. Mitochondrial genome data seem to be …
Mitochondrial genome sequence and gene order of Sipunculus nudus give additional support for an inclusion of Sipuncula into Annelida.
2010
Abstract Background Mitochondrial genomes are a valuable source of data for analysing phylogenetic relationships. Besides sequence information, mitochondrial gene order may add phylogenetically useful information, too. Sipuncula are unsegmented marine worms, traditionally placed in their own phylum. Recent molecular and morphological findings suggest a close affinity to the segmented Annelida. Results The first complete mitochondrial genome of a member of Sipuncula, Sipunculus nudus, is presented. All 37 genes characteristic for metazoan mtDNA were detected and are encoded on the same strand. The mitochondrial gene order (protein-coding and ribosomal RNA genes) resembles that of annelids, b…
A Detailed Account of The Inconsistent Labelling Problem of Stutter-Preserving Partial-Order Reduction
2021
One of the most popular state-space reduction techniques for model checking is partial-order reduction (POR). Of the many different POR implementations, stubborn sets are a very versatile variant and have thus seen many different applications over the past 32 years. One of the early stubborn sets works shows how the basic conditions for reduction can be augmented to preserve stutter-trace equivalence, making stubborn sets suitable for model checking of linear-time properties. In this paper, we identify a flaw in the reasoning and show with a counter-example that stutter-trace equivalence is not necessarily preserved. We propose a stronger reduction condition and provide extensive new correc…
Metallothionein Gene Family in the Sea Urchin Paracentrotus lividus: Gene Structure, Differential Expression and Phylogenetic Analysis
2017
Metallothioneins (MT) are small and cysteine-rich proteins that bind metal ions such as zinc, copper, cadmium, and nickel. In order to shed some light on MT gene structure and evolution, we cloned seven Paracentrotus lividus MT genes, comparing them to Echinodermata and Chordata genes. Moreover, we performed a phylogenetic analysis of 32 MTs from different classes of echinoderms and 13 MTs from the most ancient chordates, highlighting the relationships between them. Since MTs have multiple roles in the cells, we performed RT-qPCR and in situ hybridization experiments to understand better MT functions in sea urchin embryos. Results showed that the expression of MTs is regulated throughout de…
On the polymer physics origins of protein folding thermodynamics
2016
A remarkable feature of the spontaneous folding of many small proteins is the striking similarity in the thermodynamics of the folding process. This process is characterized by simple two-state thermodynamics with large and compensating changes in entropy and enthalpy and a funnel-like free energy landscape with a free-energy barrier that varies linearly with temperature. One might attribute the commonality of this two-state folding behavior to features particular to these proteins (e.g., chain length, hydrophobic/hydrophilic balance, attributes of the native state) or one might suspect that this similarity in behavior has a more general polymer-physics origin. Here we show that this behavi…
Self-ordering of metallogrid complexes via directed hydrogen-bonding.
2012
Reaction of imidazole aldehydes with dihydrazino derivatives of 2-phenylpyrimidine provides a family of bis(acylhydrazone) ligands which form [2 × 2] metallogrid complexes with transition metal ions including Fe(II), Co(II), Cu(II) and Zn(II). The free ligands show H-bonding interactions, both donor and acceptor, largely involving the imidazole units, while binding of the metal ions occupies all the acceptor sites and leaves only the pyrrolic-NH site as an H-bond donor, although its deprotonation by a strong base can regenerate an acceptor. These H-bonding interactions have been studied by (1)H NMR spectroscopy in solution and in the solid state by means of several crystal structure determi…
Mechanistic insights into the phosphoryl transfer reaction in cyclin-dependent kinase 2: a QM/MM study
2019
AbstractCyclin-dependent kinase 2 (CDK2) is an important member of the CDK family exerting its most important function in the regulation of the cell cycle. It catalyzes the transfer of the gamma phosphate group from an ATP (adenosine triphosphate) molecule to a Serine/Threonine residue of a peptide substrate. Due to the importance of this enzyme, and protein kinases in general, a detailed understanding of the reaction mechanism is desired. Thus, in this work the phosphoryl transfer reaction catalyzed by CDK2 was revisited and studied by means of hybrid quantum mechanics/molecular mechanics (QM/MM) calculations. Our results show that the base-assisted mechanism is preferred over the substrat…