Search results for " Population"
showing 10 items of 1682 documents
High-density single nucleotide polymorphism markers reveal the population structure of 2 local chicken genetic resources
2023
Italy counts a large number of local chicken populations, some without a recognized genetic structure, such as Val Platani (VPL) and Cornuta (COS), which represent noteworthy local genetic resources. In this study, the genotype data of 34 COS and 42 VPL, obtained with the Affymetrix Axiom600KChicken Genotyping Array, were used with the aim to investigate the genetic diversity, the runs of homozygosity (ROH) pattern, as well as the population structure and relationship within the framework of other local Italian and commercial chickens. The genetic diversity indices, estimated using different approaches, displayed moderate levels of genetic diversity in both populations. The identified ROH h…
Application of molecular markers to investigate genetic diversity in Sicilian livestock
2014
La diversità genetica delle specie e razze di interesse zootecnico, rappresenta un’importante risorsa in tutti i sistemi di allevamento . Per lo studio della diversità genetica, nel corso dei decenni sono stati sviluppati diversi metodi che si basano su informazioni del pedigree o su dati molecolari (microsatelliti e SNPs, Single Nucleotide Polymorphisms). Con l’aumento della disponibilità di marcatori molecolari per la maggior parte delle specie di interesse zootecnico, e con lo sviluppo di sofisticate tecniche analitiche, sta crescendo la capacità di caratterizzare la variabilità genetica delle razze. Inoltre, ad oggi, poche sono le informazioni sulla diversità genetica delle razze e dell…
A genome-wide perspective on the population structure of Italian cattle breeds
2018
Despite the growing diffusion of cosmopolite specialized breeds, several autochthonous cattle breeds and populations are still bred in Italy. The aim of this study was to provide a high-resolution picture of the genome-wide diversity and population structure of Italian local cattle breeds using medium-density genome-wide SNP markers. After data editing, the dataset included 800 samples from 32 breeds that were genotyped for 31 013 SNPs. For several breeds we observed a low level of polymorphism and genetic diversity, that together with the small effective population sizes confirmed threat of extinction. According to the runs of homozygosity analysis, evidence of recent inbreeding was strong…
TAXONOMIC, ECOLOGICAL AND CHOROLOGICAL REMARKS ON CLINOPODIUM MINAE (LAMIACEAE), CRITICAL AND RARE PLANT OF THE SICILIAN FLORA
2017
In a previous contribution (1) the finding in the wild of Clinopodium minae (Lojac.) Peruzzi & F.Conti [Bas. Calamintha minae Lojac.], a critical species close to Clinopodium corsicum (Pers.) Govaerts and well distinct from Clinopodium alpinum (L.) Kuntze subsp. nebrodense (A.Kern. & Strobl) Bartolucci & F.Conti was reported. It is a critical taxon, described by Lojacono, author of the most extensive work on the Sicilian flora (2) based on the examination of the collections of the Herbarium of Palermo (PAL!) (3). In the above cited note, the specific characters as well as the taxonomic relationships with other taxa were highlighted. At the same time, the location of a small population of C.…
Species and habitat biodiversity measure and conservation at different scale in small Mediterranean islands
2017
Small islands are geographically and ecologically well-defined areas in which biological processes are easier to schematize than in the mainland. There is a vast range of biodiversity measures, due to the large concept of biodiversity and the range of spatial, temporal and taxonomic scales used. Many existing measures are well designed and informative. But, very often they are inadequate for purposes beyond those for which they were specifically designed. Knowledge on trends in biodiversity loss is hindered by the absence of reliable basic data for most groups of organisms as well as habitats. Plants are primary producers and key structural elements for most ecosystems and islands are among…
Climate Effects on Breeding Phenology of Peregrine and Lanner Falcons in the Mediterranean
2022
We explored the effects of weather on the timing and reproduction of the Mediterranean Peregrine Falcon Falco peregrinus brookei and the Lanner Falcon F. biarmicus feldeggii living on the Mediterranean island of Sicily. We found that the start date of incubation has changed during 1979–2019 and analysed whether incubation timing affected the productivity of both populations and whether the change of incubation date and the quality of breeding sites depended on climatic conditions. Overall spring temperature and rainfall increased on Sicily and the incubation date of the Peregrine and the Lanner Falcon has shifted to be about one week later over the time period 1979 to 2019. Linear mixed mod…
Assessment of the ecological status of transitional waters in Sicily (Italy): first characterisation and classification according to a multiparametri…
2010
A 1-year cycle of observations was performed in four Sicilian transitional water systems (Oliveri-Tindari, Cape Peloro, Vendicari and Marsala) to characterise their ecological status. A panel of variables among which trophic and microbial (enzyme activities, abundance of hetetrophic bacteria and of bacterial pollution indicators) parameters, were selected. Particulate organic carbon (POC) and nitrogen (PON) and chlorophyll-. a (Chl-. a) contents defined the trophic state, while microbial hydrolysis rates and abundance gave insights on microbial community efficiency in organic matter transformation and on allochthonous inputs. To classify the trophic state of examined waters, the synthetic t…
Arbacia
2020
Arbacia is unique among shallow echinoid genus, not in line with the general rule that sea urchins should be either entirely tropical or entirely temperate, with limited overlap in the subtropics. Six extant Arbacia species have been described by Mortensen. The genus Arbacia has a Neotropical origin and four different fossil species have been described from the Late Miocene. Over the past century, Arbacia has been the subject of intense investigations into the cell biology, toxicology, biochemistry, and embryology. Recently, renewed interest in this genus arose from its phylogeny, ecology, and its resilience to ocean warming and acidification. According to several studies, impacts of ocean …
Do island plant populations really have lower genetic variation than mainland populations? Effects of selection and distribution range on genetic div…
2015
Ecological and evolutionary studies largely assume that island populations display low levels of neutral genetic variation. However, this notion has only been formally tested in a few cases involving plant taxa, and the confounding effect of selection on genetic diversity (GD) estimates based on putatively neutral markers has typically been overlooked. Here, we generated nuclear microsatellite and plastid DNA sequence data in Periploca laevigata, a plant taxon with an island–mainland distribution area, to (i) investigate whether selection affects GD estimates of populations across contrasting habitats; and (ii) test the long-standing idea that island populations have lower GD than their mai…
Genetic structure in the Mediterranean seagrass Posidonia oceanica: disentangling past vicariance events from contemporary patterns of gene flow
2010
The Mediterranean Sea is a two-basin system, with the boundary zone restricted to the Strait of Sicily and the narrow Strait of Messina. Two main population groups are recognized in the Mediterranean endemic seagrass Posidonia oceanica, corresponding to the Western and the Eastern basins. To address the nature of the East-West cleavage in P. oceanica, the main aims of this study were: (i) to define the genetic structure within the potential contact zone (i.e. the Strait of Sicily) and clarify the extent of gene flow between the two population groups, and (ii) to investigate the role of present water circulation patterns vs. past evolutionary events on the observed genetic pattern. To achiev…