Search results for " Sediment"

EVOLUZIONE DIAGENETICA DELLE SUCCESSIONI PANORMIDI DEL LIMITE TRIASSICO/GIURASSICO

Lo studio sedimentologico e stratigrafico di alcune sezioni del Triassico Superiore-Giurassico Inferiore del dominio Panormide (Sicilia), ha contribuito all’elaborazione di un dataset che consente di avanzare nuove considerazioni sulla complessa evoluzione di questo dominio paleogeografico in prossimità del limite T/J. Sono stati studiati in dettaglio tre principali settori lungo la porzione nord-occidentale della Sicilia, dai Monti di San Vito alle Madonie, attraverso i Monti di Palermo. Nel settore più occidentale presso Monte Sparagio (penisola di Capo San Vito), l’analisi delle microfacies ha consentito di posizionare il limite T/J all’interno di una spessa successione di cicli peritida…

Impact of biocide treatments on the bacterial communities of the Lascaux Cave.

2009

The Lascaux Cave contains a remarkable set of paintings from the Upper Palaeolithic. Shortly after discovery in 1940, the cave was modified for public viewing and, in 2001, was invaded by a Fusarium solani species complex. Benzalkonium chloride was used from 2001 to 2004 to eliminate the fungal outbreak. In this study, we carried out a sampling in most of the cave halls and galleries. Sequence analysis and isolation methods detected that the most abundant genera of bacteria were Ralstonia and Pseudomonas. We suggest that, as a result of years of benzalkonium chloride treatments, the indigenous microbial community has been replaced by microbial populations selected by biocide application.

Manganese/polymetallic nodules: Micro-structural characterization of exolithobiontic- and endolithobiontic microbial biofilms by scanning electron mi…

2009

Polymetallic/ferromanganese nodules (Mn-nodules) provide a rich source for manganese. It is not yet known if the nodules have a biogenic or an abiogenic origin. Here we applied the technique of high-resolution scanning electron microscopy, in combination with energy dispersive X-ray spectroscopical (EDX) analysis, to trace the existence of microbial biofilms. Two spatially separated assemblies exist, the exolithobiontic- and endolithobiontic colonizations. The exolithobiontic colonization is seen in the micro-canals, which traverse the outer surface layer of the nodules and are formed by elongated filamentous organisms, which show no signs of mineralization. In the center of the nodules thr…

Psychrotolerant Sulfate-reducing Bacteria from an Oxic Freshwater Sediment Description of Desulfovibrio cuneatus sp. nov. and Desulfovibrio litoralis…

1998

The most abundant culturable sulfate-reducing bacteria were isolated from the littoral sediment of the oligotrophic Lake Stechlin. The strains STL1 and STL4 were obtained from the oxic uppermost layer, while strain STL6 was isolated from the anoxic zone in 20 to 30 mm depth. The isolates showed a striking morphological feature in tapering off at one end of the cell. Physiological characteristics related them to the genus Desulfovibrio. They contained desulfoviridin. H2, formate, pyruvate, lactate, and fumarate were utilized with sulfate, sulfite, thiosulfate, or elemental sulfur as electron acceptors. All isolates were able to reduce oxygen and survived 120 h of aeration. However, aerobic g…

Sphingobium aromaticiconvertens sp. nov., a xenobiotic-compound-degrading bacterium from polluted river sediment.

2007

A bacterial strain capable of degrading some monochlorinated dibenzofurans, designated RW16T, was isolated from aerobic River Elbe sediments. The strain was characterized based on 16S rRNA gene sequence analysis, DNA G+C content, physiological characteristics, polyamines, ubiquinone and polar lipid pattern and fatty acid composition. This analysis revealed that strain RW16T represents a novel species of the genus Sphingobium. The DNA G+C content of strain RW16T, 60.7 mol%, is the lowest yet reported for the genus. 16S rRNA gene sequence analysis placed strain RW16T as an outlier in the genus Sphingobium. The name Sphingobium aromaticiconvertens sp. nov. is proposed for this dibenzofuran-min…

Quantification of a novel group of nitrate-reducing bacteria in the environment by real-time PCR

2004

Abstract Nitrate reduction is performed by phylogenetically diverse bacteria. Analysis of narG (alpha subunit of the membrane bound nitrate reductase) trees constructed using environmental sequences revealed a new cluster that is not related to narG gene from known nitrate-reducing bacteria. In this study, primers targeting this as yet uncultivated nitrate-reducing group were designed and used to develop a real-time SYBR® Green PCR assay. The assay was tested with clones from distinct nitrate-reducing groups and applied to various environmental samples. narG copy number was high ranging between 5.08×108 and 1.12×1011 copies per gram of dry weight of environmental sample. Environmental real-…

Comparison of different primer sets for use in Automated Ribosomal Intergenic Spacer Analysis of complex bacterial communities.

2004

ABSTRACT ITSF and ITSReub, constituting a new primer set designed for the amplification of the 16S-23S rRNA intergenic transcribed spacers, have been compared with primer sets consisting of 1406F and 23Sr (M. M. Fisher and E. W. Triplett, Appl. Environ. Microbiol. 65:4630-4636, 1999) and S-D-Bact-1522-b-S-20 and L-D-Bact-132-a-A-18 (L. Ranjard et al., Appl. Environ. Microbiol. 67:4479-4487, 2001), previously proposed for automated ribosomal intergenic spacer analysis (ARISA) of complex bacterial communities. An agricultural soil and a polluted soil, maize silage, goat milk, a small marble sample from the façade of the Certosa of Pavia (Pavia, Italy), and brine from a deep hypersaline anoxi…

Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.

2015

Three strains of methylotrophic Rhodocyclaceae (FAM1T, RZ18-153 and RZ94) isolated from Lake Washington sediment samples were characterized. Based on phylogenetic analysis of 16S rRNA gene sequences the strains should be assigned to the genus Methyloversatilis. Similarly to other members of the family, the strains show broad metabolic capabilities and are able to utilize a number of organic acids, alcohols and aromatic compounds in addition to methanol and methylamine. The main fatty acids were 16:1ω7c (49–59 %) and 16:0 (32–29 %). Genomes of all isolates were sequenced, assembled and annotated in collaboration with the DOE Joint Genome Institute (JGI). Genome comparison revealed that the s…

Dating of marine sediments by using unsupported 210Pb method

2009

In the framework of a more general study on marine species in sediments, it was necessary to obtain a time calibration of the different sections of the sampled sediment columns, both to estimate the pollution of the sediments and, particularly, to study the migration of foraminifers within the column. The method of the unsupported 210Pb, i.e. whose activity is not derived from the radioactive decay of its 226Ra parent, has been used. Since the activity of the supported 210Pb can be determined from the activity of 226Ra, the unsupported 210Pb activity can be calculated as the difference between 210Pb total and 226Ra activities. The unsupported 210Pb decays with its own half-life time, equal …

Sedimentology and sequence stratigraphy of wedge-top clastic successions: Insights and open questions from the upper Tortonian Terravecchia Formation…

2013

Abstract An up to 1250 m-thick clastic succession, the upper Tortonian Terravecchia Formation (TRV), has been analysed in detail in the middle–late Miocene Scillato wedge-top Basin grown above an already deformed tectonic stack in the northern Sicilian fold-and-thrust belt. The study involved field-based sedimentological and stratigraphic analyses aimed to determine to what extent both the depositional and sequence stratigraphic evolution of the Scillato Basin have been ruled by syn-sedimentary compressional to transpressional tectonics. Widespread intraformational angular unconformities associated with sudden change of palaeocurrents pattern and successive source area shifting suggest that…