Search results for " Simulation"
showing 10 items of 4034 documents
Conformations, Transverse Fluctuations and Crossover Dynamics of a Semi-Flexible Chain in Two Dimensions
2014
We present a unified scaling description for the dynamics of monomers of a semiflexible chain under good solvent condition in the free draining limit. We consider both the cases where the contour length $L$ is comparable to the persistence length $\ell_p$ and the case $L\gg \ell_p$. Our theory captures the early time monomer dynamics of a stiff chain characterized by $t^{3/4}$ dependence for the mean square displacement(MSD) of the monomers, but predicts a first crossover to the Rouse regime of $t^{2\nu/{1+2\nu}}$ for $\tau_1 \sim \ell_p^3$, and a second crossover to the purely diffusive dynamics for the entire chain at $\tau_2 \sim L^{5/2}$. We confirm the predictions of this scaling descr…
A Monte Carlo Study of Knots in Long Double-Stranded DNA Chains.
2016
We determine knotting probabilities and typical sizes of knots in double-stranded DNA for chains of up to half a million base pairs with computer simulations of a coarse-grained bead-stick model: Single trefoil knots and composite knots which include at least one trefoil as a prime factor are shown to be common in DNA chains exceeding 250,000 base pairs, assuming physiologically relevant salt conditions. The analysis is motivated by the emergence of DNA nanopore sequencing technology, as knots are a potential cause of erroneous nucleotide reads in nanopore sequencing devices and may severely limit read lengths in the foreseeable future. Even though our coarse-grained model is only based on …
A Comparison between Three Meta-Modeling Optimization Approaches to Design a Tube Hydroforming Process
2012
Computer aided procedures to design and optimize forming processes have become crucial research topics as the industrial interest in cost and time reduction has been increasing. A standalone numerical simulation approach could make the design too time consuming while meta-modeling techniques enables faster approximation of the investigated phenomena, reducing the simulation time. Many researchers are, nowadays, facing such research challenge by using various approaches. Response surface method (RSM) is probably the most known one, since its effectiveness was demonstrated in the past years. The effectiveness of RSM depends both on the definition of the Design of Experiments (DoE) and the acc…
A new constructive method using the theory of invariants to obtain material behavior laws
2006
International audience; The aim of this paper is to present a constructive method to derive mechanical behavior laws using the Theory of Invariants and Continuum Thermodynamics. More precisely, we want to construct, in a general way, the state or dissipation potential in a polynomial form given a set of variables V and the material symmetry group S. For this purpose, we show how to obtain a set of generators for the S-invariant polynomials of V. Then, using the Grœbner basis concept, we write all the decompositions of a polynomial of a given degree.
Novel algorithms for 3D surface point cloud boundary detection and edge reconstruction
2019
Abstract Tessellated surfaces generated from point clouds typically show inaccurate and jagged boundaries. This can lead to tolerance errors and problems such as machine judder if the model is used for ongoing manufacturing applications. This paper introduces a novel boundary point detection algorithm and spatial FFT-based filtering approach, which together allow for direct generation of low noise tessellated surfaces from point cloud data, which are not based on pre-defined threshold values. Existing detection techniques are optimized to detect points belonging to sharp edges and creases. The new algorithm is targeted at the detection of boundary points and it is able to do this better tha…
Benchmarking parameter-free AMaLGaM on functions with and without noise.
2013
We describe a parameter-free estimation-of-distribution algorithm (EDA) called the adapted maximum-likelihood Gaussian model iterated density-estimation evolutionary algorithm (AMaLGaM-ID[Formula: see text]A, or AMaLGaM for short) for numerical optimization. AMaLGaM is benchmarked within the 2009 black box optimization benchmarking (BBOB) framework and compared to a variant with incremental model building (iAMaLGaM). We study the implications of factorizing the covariance matrix in the Gaussian distribution, to use only a few or no covariances. Further, AMaLGaM and iAMaLGaM are also evaluated on the noisy BBOB problems and we assess how well multiple evaluations per solution can average ou…
Exact Voronoi diagram of smooth convex pseudo-circles: General predicates, and implementation for ellipses
2013
International audience; We examine the problem of computing exactly the Voronoi diagram (via the dual Delaunay graph) of a set of, possibly intersecting, smooth convex \pc in the Euclidean plane, given in parametric form. Pseudo-circles are (convex) sites, every pair of which has at most two intersecting points. The Voronoi diagram is constructed incrementally. Our first contribution is to propose robust and efficient algorithms, under the exact computation paradigm, for all required predicates, thus generalizing earlier algorithms for non-intersecting ellipses. Second, we focus on \kcn, which is the hardest predicate, and express it by a simple sparse $5\times 5$ polynomial system, which a…
A lipocentric view of peptide-induced pores
2010
Although lipid membranes serve as effective sealing barriers for the passage of most polar solutes, nonmediated leakage is not completely improbable. A high activation energy normally keeps unassisted bilayer permeation at a very low frequency, but lipids are able to self-organize as pores even in peptide-free and protein-free membranes. The probability of leakage phenomena increases under conditions such as phase coexistence, external stress or perturbation associated to binding of nonlipidic molecules. Here, we argue that pore formation can be viewed as an intrinsic property of lipid bilayers, with strong similarities in the structure and mechanism between pores formed with participation …
The positioning system of the ANTARES Neutrino Telescope
2012
The ANTARES neutrino telescope, located 40km off the coast of Toulon in the Mediterranean Sea at a mooring depth of about 2475m, consists of twelve detection lines equipped typically with 25 storeys. Every storey carries three optical modules that detect Cherenkov light induced by charged secondary particles (typically muons) coming from neutrino interactions. As these lines are flexible structures fixed to the sea bed and held taut by a buoy, sea currents cause the lines to move and the storeys to rotate. The knowledge of the position of the optical modules with a precision better than 10cm is essential for a good reconstruction of particle tracks. In this paper the ANTARES positioning sys…
Towards the Environmental Sustainability of the Construction Sector: Life Cycle Environmental Impacts of Buildings Retrofit
2022
In the context of the need for carbon emissions reduction, the buildingsector, as one of the most energy intensive one, needs tools and approaches towards carbon neutrality and the increase of the buildings overall energy performances. The paper proposes an integrated approach towards the environmental performances analysis of a small neighborhood having as goal the achievement of the Positive Energy District target and the assessment of its environmental impacts. The methodology proposed includes building modeling and dynamic energy simulation using the Energy Plus engine and a simplified Life Cycle Assessment approach. Two scenarios are investigated: i) the existing neighborhood, ii) the …