Search results for " Simulation"

showing 10 items of 4034 documents

Reverse-engineering post-transcriptional regulation of gap genes in Drosophila melanogaster

2013

16 páginas, 6 figuras, 1 tabla

Systems biologyContext (language use)Computational biology03 medical and health sciencesCellular and Molecular Neuroscience0302 clinical medicineKrüppelGeneticsAnimalsDrosophila ProteinsRNA MessengerMolecular BiologyPost-transcriptional regulationlcsh:QH301-705.5Ecology Evolution Behavior and SystematicsGap gene030304 developmental biologyGenetics0303 health sciencesEcologybiologyModels GeneticProtein StabilitySystems BiologyGene Expression Regulation Developmentalbiology.organism_classificationRepressor ProteinsDrosophila melanogasterComputational Theory and Mathematicslcsh:Biology (General)Modeling and SimulationIdentifiabilityDrosophila melanogasterGenetic Engineering030217 neurology & neurosurgeryDrosophila ProteinResearch Article
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epiModel: A system to build automatically systems of differential equations of compartmental type-epidemiological models

2011

In this paper we describe epiModel, a code developed in Mathematica that facilitates the building of systems of differential equations corresponding to type-epidemiological linear or quadratic models whose characteristics are defined in text files following an easy syntax. It includes the possibility of obtaining the equations of models involving age and/or sex groups. © 2011.

Systems of differential equationsDifferential equationsTheoretical computer scienceBuilding codesDifferential equationComputer scienceAutomatic building of systems of differential equationsDisease transmissionMathematical parametersMathematicaHealth InformaticsText fileComputer programEpidemiological modelType (model theory)Models BiologicalModellingArticleDisease predispositionQuadratic equationMathematical modelComputingMethodologies_SYMBOLICANDALGEBRAICMANIPULATIONComputer SimulationQuadratic modelsPriority journalSyntax (programming languages)Computer programText fileConvalescenceComputer Science ApplicationsCompartment modelType-epidemiological modelProgramming LanguagesEpidemiologic MethodsMATEMATICA APLICADADisease transmissionHuman
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Historical Buildings in protected areas in Italy: a re-design study of a rural building

2017

Historic and traditional buildings, including rural ones, are a territorial resource in Europe and constitute an integral part of the European’s cultural heritage. However they are often characterized by poor energy performances and a large potential for energy retrofit actions. On the other hand, the hardest part of retrofitting such buildings is the limited invasiveness that such actions need to have on the historical and heritage value of the building itself. The paper describes an experience of re-design of an existing rural building located in Sicily, inside the ancient Greeks “Valley of the Temples”. An energy audit was performed on the building, its energy uses thoroughly investigate…

TRNSYS Building SimulationHistorical BuildingBuilding Retrofit
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Novel method and instruments for the optimal techno-economic sizing of borehole heat exchangers

2021

El test de respuesta térmica (TRT) es ampliamente utilizado como método estándar para caracterizar las propiedades térmicas del terreno adyacente a un intercambiador de calor enterrado (BHE). Los métodos tradicionales para interpretar los resultados aplican soluciones analíticas o numéricas asumiendo que el terreno es infinito, homogéneo e isotrópico. Sin embargo, en realidad el subsuelo presenta generalmente una estructura estratificada y heterogénea, y por lo tanto las propiedades térmicas pueden variar sustancialmente con la profundidad. En este sentido y con la intención de resolver las limitaciones del TRT estándar, la presente tesis doctoral se centra en el desarrollo de métodos e ins…

TRT tub observador:CIENCIAS TECNOLÓGICAS [UNESCO]bomba de calor geotèrmicaTRT tubo observadorsubsuelo multicapaintercanviador de calor soterrattechno-economic optimizationconductivitat tèrmicathermal conductivityoptimización técnico-económicabomba de calor geotérmicaenergy efficiencyborehole heat exchanger (BHE)ground source heat pump (GSHP)eficiencia energéticasimulació numèricaintercambiador de calor enterradoUNESCO::CIENCIAS TECNOLÓGICASeficiència energèticasubsol multicapasimulación numéricaoptimització tècnic-econòmicaconductividad térmicanumerical simulationobserver pipe thermal response test (OP-TRT)layered subsurface
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Non-invasive localization of atrial ectopic beats by using simulated body surface P-wave integral maps

2017

Non-invasive localization of continuous atrial ectopic beats remains a cornerstone for the treatment of atrial arrhythmias. The lack of accurate tools to guide electrophysiologists leads to an increase in the recurrence rate of ablation procedures. Existing approaches are based on the analysis of the P-waves main characteristics and the forward body surface potential maps (BSPMs) or on the inverse estimation of the electric activity of the heart from those BSPMs. These methods have not provided an efficient and systematic tool to localize ectopic triggers. In this work, we propose the use of machine learning techniques to spatially cluster and classify ectopic atrial foci into clearly diffe…

TachycardiaPhysiologyComputer sciencemedicine.medical_treatment02 engineering and technology030204 cardiovascular system & hematologyBioinformaticsBiochemistryACTIVATIONElectrocardiography0302 clinical medicineHeart RateAtrial FibrillationMedicine and Health SciencesImage Processing Computer-AssistedDEPOLARIZATIONBody surface P-wave integral mapsCardiac AtriaAtrial ectopic beatsMultidisciplinarymedicine.diagnostic_testORIGINApplied MathematicsSimulation and ModelingP waveBody Surface Potential MappingQRHeartHUMANSaarhythmiasAblationANATOMYBioassays and Physiological Analysismachine learningPhysical SciencesAtrial ectopic beatsMedicineAtrial Premature ComplexesFIBRILLATIONmedicine.symptomTACHYCARDIAAlgorithmsResearch ArticleclusteringTachycardia Ectopic AtrialComputer and Information SciencesSVMScienceCORONARY-SINUS0206 medical engineeringCardiologyResearch and Analysis MethodsMembrane PotentialTECNOLOGIA ELECTRONICAMachine Learning Algorithms03 medical and health sciencesArtificial IntelligenceHeart Conduction SystemSupport Vector MachinesBody surfacemedicineComputer SimulationHeart AtriaCoronary sinusFibrillationbusiness.industryElectrophysiological TechniquesBiology and Life SciencesPattern recognitionAtrial arrhythmiasELECTROPHYSIOLOGY020601 biomedical engineeringMODELElectrophysiologyCardiovascular AnatomyCardiac ElectrophysiologyArtificial intelligencebusinessElectrocardiographyBiomarkersMathematics
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In silico pace-mapping: prediction of left vs. right outflow tract origin in idiopathic ventricular arrhythmias with patient-specific electrophysiolo…

2019

Abstract Aims A pre-operative non-invasive identification of the site of origin (SOO) of outflow tract ventricular arrhythmias (OTVAs) is important to properly plan radiofrequency ablation procedures. Although some algorithms based on electrocardiograms (ECGs) have been developed to predict left vs. right ventricular origins, their accuracy is still limited, especially in complex anatomies. The aim of this work is to use patient-specific electrophysiological simulations of the heart to predict the SOO in OTVA patients. Methods and results An in silico pace-mapping procedure was designed and used on 11 heart geometries, generating for each case simulated ECGs from 12 clinically plausible SOO…

Tachycardiamedicine.medical_specialtyRadiofrequency ablationmedicine.medical_treatmentHeart Ventricles0206 medical engineering02 engineering and technology030204 cardiovascular system & hematologylaw.invention03 medical and health sciencesElectrocardiography0302 clinical medicinelawPhysiology (medical)Internal medicinemedicineHumansComputer SimulationElectrophysiological simulationscardiovascular diseasesbusiness.industryOutflow tract ventricular arrhythmiaRadiofrequency ablationCardiac arrhythmiaArrhythmias CardiacPatient specificAblation020601 biomedical engineeringElectrophysiologymedicine.anatomical_structureVentricleIn silico pace-mappingCardiologyCatheter AblationTachycardia VentricularOutflowmedicine.symptomCardiology and Cardiovascular Medicinebusiness
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Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut

2013

Abstract Background The main limitations in the analysis of viral metagenomes are perhaps the high genetic variability and the lack of information in extant databases. To address these issues, several bioinformatic tools have been specifically designed or adapted for metagenomics by improving read assembly and creating more sensitive methods for homology detection. This study compares the performance of different available assemblers and taxonomic annotation software using simulated viral-metagenomic data. Results We simulated two 454 viral metagenomes using genomes from NCBI's RefSeq database based on the list of actual viruses found in previously published metagenomes. Three different ass…

Taxonomic classificationComputational biologyBiologyGenomeContig MappingContig MappingUser-Computer Interface03 medical and health sciencesAnnotationDatabases GeneticGeneticsRefSeqCluster AnalysisHumansComputer SimulationTaxonomic rank030304 developmental biologyDe Bruijn sequenceInternetPrincipal Component Analysis0303 health sciencesBacteriaContigChimera identification030306 microbiologyComputational BiologyFunctional annotationViral metagenomeIntestinesAssembler performanceMetagenomicsVirusesMetagenomicsAlgorithmsResearch ArticleBiotechnologyBMC Genomics
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Pitfalls in the Development of Agent-Based Models in Social Sciences: Avoiding Them and Learning from Them

2019

The references on the principles and methodology for developing agent-based models of social phenomena usually describe general principles and illustrate the process using worked examples, but seldom focus on the pitfalls and errors that make practical model building a tortuous and difficult task. This chapter contains a discussion of the positive and negative aspects of my personal experience in a PhD work on simulation of large scale social conflict. The purpose will be to describe the process from the initial plan to the final dissertation, analyze the pitfalls and their overcoming in terms of principles of model development, and summarize the ideas that I found useful for practical deve…

TeamworkComputer scienceProcess (engineering)Management sciencemedia_common.quotation_subjectScale (chemistry)Social conflictPlan (drawing)Model buildingmedia_commonAbstraction (linguistics)Social simulation
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Novel Concept for Electro-Hydrostatic Actuators for Motion Control of Hydraulic Manipulators

2021

Self-contained hydraulic cylinders have gained popularity in the recent years but have not been implemented for high power articulated hydraulic manipulators. This paper presents a novel concept for an electro-hydrostatic actuator applicable to large hydraulic manipulators. The actuator is designed and analyzed to comply with requirements such as load holding, overload handling, and differential flow compensation. The system is analyzed during four quadrant operation to investigate energy efficiency and regenerative capabilities. Numerical simulation is carried out using path control and 2DOF anti-swing of a hydraulic crane as a load case to illustrate a real world scenario. A comparison wi…

TechnologyControl and Optimizationpassive load-holdingComputer scienceEnergy Engineering and Power TechnologyComputerApplications_COMPUTERSINOTHERSYSTEMSServomotorlaw.inventionControl theorylawfour-quadrant operationElectrical and Electronic Engineeringelectro-hydrostatic actuatorEngineering (miscellaneous)Computer simulationRenewable Energy Sustainability and the EnvironmentTpump-controlled cylinderElectro-hydraulic actuatorMotion controlPower (physics)VDP::Teknologi: 500electro-hydrostatic actuator; pump-controlled cylinder; four-quadrant operation; passive load-holding; servomotorHydraulic cylinderservomotorActuatorEnergy (miscellaneous)Efficient energy useEnergies
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Position paper - progress towards standards in integrated (aerobic) MBR modelling.

2020

Membrane bioreactor (MBR) models are useful tools for both design and management. The system complexity is high due to the involved number of processes which can be clustered in biological and physical ones. Literature studies are present and need to be harmonized in order to gain insights from the different studies and allow system optimization by applying a control. This position paper aims at defining the current state of the art of the main integrated MBR models reported in the literature. On the basis of a modelling review, a standardized terminology is proposed to facilitate the further development and comparison of integrated membrane fouling models for aerobic MBRs. ispartof: WATER …

TechnologyEnvironmental EngineeringComputer sciencePROCESS SIMULATIONPRESSURE SET-POINTReactors de membranaEnvironmental Sciences & Ecology02 engineering and technology010501 environmental sciencesMembrane bioreactorMembranes (Technology)01 natural sciencesSUBMERGED MEMBRANE BIOREACTOREngineeringBioreactorsMembrane reactorsCONTROL-SYSTEMterminology[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process EngineeringDEPOSITIONOPTIMIZATION0105 earth and related environmental sciencesWater Science and TechnologyScience & TechnologyCAKE LAYER FORMATIONSettore ICAR/03 - Ingegneria Sanitaria-AmbientaleCOMPUTATIONAL FLUID-DYNAMICSMBR modellingMembrane foulingIntegrated modelMembranes (Tecnologia)Engineering EnvironmentalSystem optimizationMembranes ArtificialModels Theoretical021001 nanoscience & nanotechnologyTerminology6. Clean waterStandardized terminologyPhysical SciencesFILTRATIONWater ResourcesPosition paperBiochemical engineeringintegrated modelSENSITIVITY0210 nano-technologyLife Sciences & BiomedicineEnvironmental SciencesWater science and technology : a journal of the International Association on Water Pollution Research
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