Search results for " Theory"
showing 10 items of 23462 documents
Variational Approximations for Generalized Linear Latent Variable Models
2017
Generalized linear latent variable models (GLLVMs) are a powerful class of models for understanding the relationships among multiple, correlated responses. Estimation, however, presents a major challenge, as the marginal likelihood does not possess a closed form for nonnormal responses. We propose a variational approximation (VA) method for estimating GLLVMs. For the common cases of binary, ordinal, and overdispersed count data, we derive fully closed-form approximations to the marginal log-likelihood function in each case. Compared to other methods such as the expectation-maximization algorithm, estimation using VA is fast and straightforward to implement. Predictions of the latent variabl…
Differential survival throughout the full annual cycle of a migratory bird presents a life‐history trade‐off
2021
1. Long‐distance migrations are among the most physically demanding feats animals perform. Understanding the potential costs and benefits of such behaviour is a fundamental question in ecology and evolution. A hypothetical cost of migration should be outweighed by higher productivity and/or higher annual survival, but few studies on migratory species have been able to directly quantify patterns of survival throughout the full annual cycle and across the majority of a species’ range. 2. Here, we use telemetry data from 220 migratory Egyptian vultures Neophron percnopterus, tracked for 3,186 bird months and across approximately 70% of the species’ global distribution, to test for differences …
The irreducible uncertainty of the demography–environment interaction in ecology
2002
The interpretation of ecological data has been greatly improved by bridging the gap between ecological and statistical models. The major challenge is to separate competing hypotheses concerning demography, or other ecological relationships, and environmental variability (noise). In this paper we demonstrate that this may be an arduous, if not impossible, task. It is the lack of adequate ecological theory, rather than statistical sophistication, which leads to this problem. A reconstruction of underlying ecological processes can only be done if we are certain of either the demographic or the noise model, which is something that can only be achieved by an improved theory of stochastic ecologi…
Testing the habituation assumption underlying models of parasitoid foraging behavior
2016
BackgroundHabituation, a form of non-associative learning, has several well-defined characteristics that apply to a wide range of physiological and behavioral responses in many organisms. In classic patch time allocation models, habituation is considered to be a major mechanistic component of parasitoid behavioral strategies. However, parasitoid behavioral responses to host cues have not previously been tested for the known, specific characteristics of habituation.MethodsIn the laboratory, we tested whether the foraging behavior of the egg parasitoidTrissolcus basalisshows specific characteristics of habituation in response to consecutive encounters with patches of host (Nezara viridula) ch…
An Algebraic Derivation of Chao’s Estimator of the Number of Species in a Community Highlights the Condition Allowing Chao to Deliver Centered Estima…
2014
Anne Chao proposed a very popular, nonparametric estimator of the species richness of a community, on the basis of a limited size sampling of this community. This expression was originally derived on a statistical basis as a lower-bound estimate of the number of missing species in the sample and provides accordingly a minimal threshold for the estimation of the total species richness of the community. Hereafter, we propose an alternative, algebraic derivation of Chao’s estimator, demonstrating thereby that Chao’s formulation may also provide centered estimates (and not only a lower bound threshold), provided that the sampled communities satisfy a specific type of SAD (species abundance dist…
The effect of fish life-history structures on the topologies of aquatic food webs
2021
Biological organisms can vastly change their ecological functionality due to changes in body size and diet across their life. Consequently, it has been increasingly recognized that to attain sufficient biological realism, food webs may need to include life-history structures. The objective of the work is to study theoretically whether and how the inclusion of life-history structures affects the food web topology. Topological research was done by applying network theory metrics for three different food web types with two different sizes that were generated by using the niche-model. The dynamical modeling was performed by using an allometric trophic network modeling approach. The different ty…
Fossorial but widespread: the phylogeography of the common spadefoot toad (Pelobates fuscus), and the role of the Po Valley as a major source of gene…
2007
International audience; Pelobates fuscus is a fossorial amphibian that inhabits much of the European plain areas. To unveil traces of expansion and contraction events of the species' range, we sequenced 702 bp of the mitochondrial cytochrome b gene. To infer the population history we applied phylogeographical methods, such as nested clade phylogeographical analysis (NCPA), and used summary statistics to analyse population structure under a neutral model of evolution. Populations were assigned to different drainage systems and we tested hypotheses of explicit refugial models using information from analysis of molecular variance, nucleotide diversity, effective population size estimation, NCP…
Update in unified terroir zoning methodologies
2018
International audience; The concept of terroir is based on the assumption that the quality and the typicity of an agricultural product are linked to its origin. The precise definition of an origin requires zoning. Because terroir expression in viticulture is largely driven by interactions between the vine and its natural environment, soil and climate play a key role in terroir zoning. For clarity, soil-based and climate-based zoning are presented separately in this paper. They are, however, ideally carried out simultaneously, because of the existence of multiple interactions between these terroir factors. Prior to the implementation of zoning, the objectives need to be carefully defined. Th…
Molecular Systematics of the Long-Snouted Deep Water Dogfish (Centrophoridae, Deania) With Implications for Identification, Taxonomy, and Conservation
2021
According to the most recent taxonomical revision, the deep-sea dogfish genus Deania encompasses four species. Three of them, D. calcea, D. profundorum, and D. hystricosa, occur in the North Atlantic. Whilst D. profundorum can be identified by the presence of a subcaudal keel, the other two species are not easily visually distinguished. Uncertainties over identification raises concerns over stock units and whether management plans are adequate. In this study we compared onboard visual identification of Deania specimens, with morphological inspection of skin denticles under stereo microscope and with independent molecular taxonomical assignment using two molecular markers. Particular emphasi…
Phenotypic plasticity in growth and fecundity induced by strong population fluctuations affects reproductive traits of female fish
2016
Fish are known for their high phenotypic plasticity in life-history traits in relation to environmental variability, and this is particularly pronounced among salmonids in the Northern Hemisphere. Resource limitation leads to trade-offs in phenotypic plasticity between life-history traits related to the reproduction, growth, and survival of individual fish, which have consequences for the age and size distributions of populations, as well as their dynamics and productivity. We studied the effect of plasticity in growth and fecundity of vendace females on their reproductive traits using a series of long-term incubation experiments. The wild parental fish originated from four separate populat…