Search results for " algorithm"
showing 10 items of 2538 documents
A quantum vocal theory of sound
2020
Concepts and formalism from acoustics are often used to exemplify quantum mechanics. Conversely, quantum mechanics could be used to achieve a new perspective on acoustics, as shown by Gabor studies. Here, we focus in particular on the study of human voice, considered as a probe to investigate the world of sounds. We present a theoretical framework that is based on observables of vocal production, and on some measurement apparati that can be used both for analysis and synthesis. In analogy to the description of spin states of a particle, the quantum-mechanical formalism is used to describe the relations between the fundamental states associated with phonetic labels such as phonation, turbule…
Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform
2012
Motivation The Burrows-Wheeler transform (BWT) is the foundation of many algorithms for compression and indexing of text data, but the cost of computing the BWT of very large string collections has prevented these techniques from being widely applied to the large sets of sequences often encountered as the outcome of DNA sequencing experiments. In previous work, we presented a novel algorithm that allows the BWT of human genome scale data to be computed on very moderate hardware, thus enabling us to investigate the BWT as a tool for the compression of such datasets. Results We first used simulated reads to explore the relationship between the level of compression and the error rate, the leng…
Causal Effect Identification from Multiple Incomplete Data Sources: A General Search-Based Approach
2021
Causal effect identification considers whether an interventional probability distribution can be uniquely determined without parametric assumptions from measured source distributions and structural knowledge on the generating system. While complete graphical criteria and procedures exist for many identification problems, there are still challenging but important extensions that have not been considered in the literature. To tackle these new settings, we present a search algorithm directly over the rules of do-calculus. Due to generality of do-calculus, the search is capable of taking more advanced data-generating mechanisms into account along with an arbitrary type of both observational and…
Grapham: Graphical models with adaptive random walk Metropolis algorithms
2008
Recently developed adaptive Markov chain Monte Carlo (MCMC) methods have been applied successfully to many problems in Bayesian statistics. Grapham is a new open source implementation covering several such methods, with emphasis on graphical models for directed acyclic graphs. The implemented algorithms include the seminal Adaptive Metropolis algorithm adjusting the proposal covariance according to the history of the chain and a Metropolis algorithm adjusting the proposal scale based on the observed acceptance probability. Different variants of the algorithms allow one, for example, to use these two algorithms together, employ delayed rejection and adjust several parameters of the algorithm…
Binary jumbled string matching for highly run-length compressible texts
2012
The Binary Jumbled String Matching problem is defined as: Given a string $s$ over $\{a,b\}$ of length $n$ and a query $(x,y)$, with $x,y$ non-negative integers, decide whether $s$ has a substring $t$ with exactly $x$ $a$'s and $y$ $b$'s. Previous solutions created an index of size O(n) in a pre-processing step, which was then used to answer queries in constant time. The fastest algorithms for construction of this index have running time $O(n^2/\log n)$ [Burcsi et al., FUN 2010; Moosa and Rahman, IPL 2010], or $O(n^2/\log^2 n)$ in the word-RAM model [Moosa and Rahman, JDA 2012]. We propose an index constructed directly from the run-length encoding of $s$. The construction time of our index i…
Forrelation
2014
We achieve essentially the largest possible separation between quantum and classical query complexities. We do so using a property-testing problem called Forrelation, where one needs to decide whether one Boolean function is highly correlated with the Fourier transform of a second function. This problem can be solved using 1 quantum query, yet we show that any randomized algorithm needs Ω(√(N)log(N)) queries (improving an Ω(N[superscript 1/4]) lower bound of Aaronson). Conversely, we show that this 1 versus Ω(√(N)) separation is optimal: indeed, any t-query quantum algorithm whatsoever can be simulated by an O(N[superscript 1-1/2t])-query randomized algorithm. Thus, resolving an open questi…
Knowledge Base Approach for 3D Objects Detection in Point Clouds Using 3D Processing and Specialists Knowledge
2012
This paper presents a knowledge-based detection of objects approach using the OWL ontology language, the Semantic Web Rule Language, and 3D processing built-ins aiming at combining geometrical analysis of 3D point clouds and specialist's knowledge. Here, we share our experience regarding the creation of 3D semantic facility model out of unorganized 3D point clouds. Thus, a knowledge-based detection approach of objects using the OWL ontology language is presented. This knowledge is used to define SWRL detection rules. In addition, the combination of 3D processing built-ins and topological Built-Ins in SWRL rules allows a more flexible and intelligent detection, and the annotation of objects …
Time and space efficient quantum algorithms for detecting cycles and testing bipartiteness
2016
We study space and time efficient quantum algorithms for two graph problems -- deciding whether an $n$-vertex graph is a forest, and whether it is bipartite. Via a reduction to the s-t connectivity problem, we describe quantum algorithms for deciding both properties in $\tilde{O}(n^{3/2})$ time and using $O(\log n)$ classical and quantum bits of storage in the adjacency matrix model. We then present quantum algorithms for deciding the two properties in the adjacency array model, which run in time $\tilde{O}(n\sqrt{d_m})$ and also require $O(\log n)$ space, where $d_m$ is the maximum degree of any vertex in the input graph.
Statistical Performance Analysis of a Fast Super-Resolution Technique Using Noisy Translations.
2014
It is well known that the registration process is a key step for super-resolution reconstruction. In this work, we propose to use a piezoelectric system that is easily adaptable on all microscopes and telescopes for controlling accurately their motion (down to nanometers) and therefore acquiring multiple images of the same scene at different controlled positions. Then a fast super-resolution algorithm \cite{eh01} can be used for efficient super-resolution reconstruction. In this case, the optimal use of $r^2$ images for a resolution enhancement factor $r$ is generally not enough to obtain satisfying results due to the random inaccuracy of the positioning system. Thus we propose to take seve…
Almost disjoint spanning trees: relaxing the conditions for completely independent spanning trees
2017
International audience; The search of spanning trees with interesting disjunction properties has led to the introduction of edge-disjoint spanning trees, independent spanning trees and more recently completely independent spanning trees. We group together these notions by dening (i, j)-disjoint spanning trees, where i (j, respectively) is the number of vertices (edges, respectively) that are shared by more than one tree. We illustrate how (i, j)-disjoint spanning trees provide some nuances between the existence of disjoint connected dominating sets and completely independent spanning trees. We prove that determining if there exist two (i, j)-disjoint spanning trees in a graph G is NP-comple…