Search results for " barcoding"
showing 10 items of 85 documents
Italian Odonates in the Pandora’s Box: A Comprehensive DNA Barcoding Inventory Shows Taxonomic Warnings at the Holarctic Scale
2020
AbstractThe Odonata are considered among the most endangered freshwater faunal taxa. Their DNA-based monitoring relies on validated reference datasets that are often lacking or do not cover important biogeographical centres of diversification. This study presents the results of a DNA barcoding campaign on Odonata, based on the standard 658 bp 5’ end region of the mitochondrial COI gene, involving the collection of 812 specimens (409 of which barcoded) from peninsular Italy and its main islands (328 localities), belonging to all the 88 species (31 Zygoptera and 57 Anisoptera) known from the country. Additional BOLD and GenBank data from Holarctic samples expanded the dataset to 1294 DNA barc…
Biodiversity in the era of the market globalization: some cases from the marine realm
2015
The over-exploitation of the most consumed species has determined an increase in demand of frozen or trasformed fishery products importated from different countries. This caused an increase of food fraud represented by the substitution of a species with another with less eco- nomical value but which presents similar morphological characeristics. The use of modern tools as the DNA barcoding is crucial for traceability of such products and provides the consumer the necessary information about the exact identification of the species and their origin. The Italia and European Union food stuff are controlled thanks to laws, while for many non UE products are not expected any control inspection
Cryptic diversity within three South American whip spider species (Arachnida, Amblypygi)
2020
4 pages; International audience; Cryptic diversity (CD), the presence of highly divergent phylogenetic lineages within closed morphological species, has been documented for many taxa. Great arachnid orders such as Araneae or Scorpiones are well studied and many cases of CD have been described therein; to date, however, related research on smaller arachnid orders, such as whip spiders (Amblypygi), remains lacking. In the current study, we investigated CD based on cytochrome oxidase 1 (COI) in three nominal species of the genus Heterophrynus (H. alces, H. batesii, and H. longicornis), represented by 65 specimens. The sequences were compared using three different methods. All three species sho…
On the occurrence of the invasive Atlantic blue crab Callinectes sapidus Rathbun 1896 (Decapoda: Brachyura: Portunidae) in Sicilian inland waters
2022
The Atlantic blue crab Callinectes sapidus Rathbun, 1896 is included among the worst invasive alien species in the Mediterranean Sea. Here, we report the finding of the species in two Sicilian rivers, the Irminio and the Imera Meridionale, where it was collected up to 6 km from the river mouths. Although several records of the species are already available from Italy, this is the first evidence of the occurrence of this invasive crab so far from the coastline in the whole country. In the light of the well-known impact of the Atlantic blue crab on the invaded water bodies, the monitoring of the species and appropriate mitigation strategies should be implemented in order to protect the threat…
DNA traces the origin of honey by identifying plants, bacteria and fungi
2021
The regional origin of a food product commonly affects its value. To this, DNA-based identification of tissue remains could offer fine resolution. For honey, this would allow the usage of not only pollen but all plant tissue, and also that of microbes in the product, for discerning the origin. Here we examined how plant, bacterial and fungal taxa identified by DNA metabarcoding and metagenomics differentiate between honey samples from three neighbouring countries. To establish how the taxonomic contents of honey reflect the country of origin, we used joint species distribution modelling. At the lowest taxonomic level by metabarcoding, with operational taxonomic units, the country of origin …
Tassonomia integrata per lo studio della biodiversità vegetale
2010
Diversi marcatori plastidiali sono stati testati su varie specie della flora vascolare spontanea al fine di valutarne il potere discriminante come DNA barcoding, da integrare nell'identificazione tassonomica con i dati morfologici, cariologici, fenologici e biogeografici.
The DNA barcoding of Mediterranean combtooth blennies suggests the paraphyly of some taxa (Perciformes, Blenniidae)
2019
A dataset including novel and publicly available mtDNA COI sequences of 14 Mediterranean combtooth blenny species belonging to nine genera was assembled in order to provide a reference dataset for DNA barcoding studies. Some inconsistencies in the current taxonomy of some genera were observed. In particular, the monophyly of the genera Parablennius and Salaria is not supported by the present dataset and the absence of reciprocal monophyly between the morphospecies Salaria basilisca and S. pavo questions their status and stresses the need of a revision of the genus Salaria.
Confrontation of cryptic diversity and mate discrimination within Gammarus pulex and Gammarus fossarum species complexes.
2014
16 pages; International audience; Freshwater amphipods Gammarus fossarum and Gammarus pulex are widespread in Europe, with some evidence of cryptic diversity in the former. We used DNA barcoding to assess genetic diversity within and among amphipod populations and examined mate discrimination and pre-copulatory pair formation between genetically divergent individuals. Eight distinct G. fossarum and four distinct G. pulex molecular operational taxonomic units (MOTUs) were detected. Among the 33 amphipod populations sampled, 11 contained a single MOTU, 11 had two and 11 were composed of three sympatric MOTUs. Genetic divergences between sympatric MOTUs (G. fossarum and G. pulex MOTUs combined…
Immigrant Tortricidae: Holarctic versus Introduced Species in North America
2020
In support of a comprehensive update to the checklist of the moths of North America, we attempt to determine the status of 151 species of Tortricidae present in North America that may be Holarctic, introduced, or sibling species of their European counterparts. Discovering the natural distributions of these taxa is often difficult, if not impossible, but several criteria can be applied to determine if a species that is present in both Europe and North America is natively Holarctic, introduced, or represented by different but closely related species on each continent. We use DNA barcodes (when available), morphology, host plants, and historical records (literature and museum specimens) to mak…
An integrated approach to the study of Hypericum occurring in Sicily
2020
An integrated approach to the study of taxa of the genus Hypericum occurring in Sicily is proposed. The results of morphological, biochemical, and molecular analyses are combined to better assess the relationships between the species investigated and test the suitability of DNA barcoding technique in the discrimination of these taxa. For the name Hypericum aegypticum subsp. webbii (Spach) N. Robson a lectotype is designated. For Hypericum triquetrifolium Turra a lectotype and a supporting epitype are designated. The presence of Hypericum perforatum L. subsp. perforatum is excluded from Sicily and the previous reports have to be referred to H. perforatum subsp. veronense (Schrank) Ces. Hyper…