Search results for " channels."

showing 10 items of 386 documents

Computational methods and theory for ion channel research

2022

Ion channels are fundamental biological devices that act as gates in order to ensure selective ion transport across cellular membranes; their operation constitutes the molecular mechanism through which basic biological functions, such as nerve signal transmission and muscle contraction, are carried out. Here, we review recent results in the field of computational research on ion channels, covering theoretical advances, state-of-the-art simulation approaches, and frontline modeling techniques. We also report on few selected applications of continuum and atomistic methods to characterize the mechanisms of permeation, selectivity, and gating in biological and model channels.

continuum modelsmolecular dynamicselectivityIon channels; biomimetic nanopores; conductance; continuum models; gating; machine learning; molecular dynamics; rare events; selectivityGeneral Physics and AstronomyArticlemolecular dynamicsSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)rare eventsmachine learningcontinuum modelIon channelsgatingddc:530biomimetic nanoporesIon channelbiomimetic nanoporerare eventconductance
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Preparation of potentially porous, chiral organometallic materials through spontaneous resolution of pincer palladium conformers.

2013

Understanding the mechanism by which advanced materials assemble is essential for the design of new materials with desired properties. Here, we report a method to form chiral, potentially porous materials through spontaneous resolution of conformers of a PCP pincer palladium complex ({2,6-bis[(di-t-butylphosphino)methyl]phenyl}palladium(II)halide). The crystallisation is controlled by weak hydrogen bonding giving rise to chiral qtz-nets and channel structures, as shown by 16 such crystal structures for X = Cl and Br with various solvents like pentane and bromobutane. The fourth ligand (in addition to the pincer ligand) on palladium plays a crucial role; the chloride and the bromide primaril…

crystal structuretermoanalyysichemistry.chemical_elementCrystal structurekiderakenne010402 general chemistryjauhe röntgen diffraktioCrystallography X-Ray01 natural scienceshuokoiset materiaalitpalladium kompleksiInorganic ChemistryMolecular recognitionOrganometallic CompoundsMoleculePincer ligandta116palladium pincer complexes; hexagonal channels; self-assembly; weak interactionssingle crystal X-ray diffractionpowder X-ray diffractionorganometalliMolecular Structure010405 organic chemistryChemistryStereoisomerismpalladium complexyksikide röntgen diffraktio0104 chemical sciencesPincer movementChemistryCrystallographySelf-assemblyporous materialsPorosityPalladiumMonoclinic crystal systemPalladiumDalton transactions (Cambridge, England : 2003)
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Time-Frequency Characteristics of In-Home Radio Channels Influenced by Activities of the Home Occupant

2019

While aging is a serious global concern, in-home healthcare monitoring solutions are limited to context-aware systems and wearable sensors, which may easily be forgotten or ignored for privacy and comfort reasons. An emerging non-wearable fall detection approach is based on processing radio waves reflected off the body, who has no active interaction with the system. This paper reports on an indoor radio channel measurement campaign at 5.9 GHz, which has been conducted to study the impact of fall incidents and some daily life activities on the temporal and spectral properties of the indoor channel under both line-of-sight (LOS) and obstructed-LOS (OLOS) propagation conditions. The time-frequ…

device-free fall detectionComputer scienceReal-time computingWearable computerVDP::Information and communication science: 42002 engineering and technologylcsh:Chemical technology01 natural sciencesBiochemistryArticleAnalytical ChemistryDoppler power spectral density0202 electrical engineering electronic engineering information engineeringlcsh:TP1-1185Electrical and Electronic EngineeringInstrumentationnon-stationary radio channels010401 analytical chemistry020206 networking & telecommunicationsAtomic and Molecular Physics and Optics0104 chemical sciencesTime–frequency analysisspectrogram analysisVDP::Informasjons- og kommunikasjonsvitenskap: 420Radio waveCommunication channelambient-assisted livingSensors (Basel, Switzerland)
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Mini-Review: Two Brothers in Crime – The Interplay of TRESK and TREK in Human Diseases

2021

Abstract TWIK-related spinal cord potassium (TRESK) and TWIK-related potassium (TREK) channels are both subfamilies of the two-pore domain potassium (K2P) channel group. Despite major structural, pharmacological, as well as biophysical differences, emerging data suggest that channels of these two subfamilies are functionally more closely related than previously assumed. Recent studies, for instance, indicate an assembling of TRESK and TREK subunits, leading to the formation of heterodimeric channels with different functional properties compared to homodimeric ones. Formation of tandems consisting of TRESK and TREK subunits might thus multiply the functional diversity of both TRESK and TREK …

endocrine systemPain syndromePotassium ChannelsGeneral NeuroscienceContext (language use)BiologyMini reviewFunctional diversityPotassium Channels Tandem Pore DomainNeuroinflammatory DiseasesHumansProtein Multimerizationhuman activitiesNeuroscienceNeuroscience Letters
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'TRPing' synaptic ribbon function in the rat pineal gland: neuroendocrine regulation involves the capsaicin receptor TRPV1.

2009

Synaptic ribbons (SRs) are presynaptic structures thought to regulate and facilitate multivesicular release. In the pineal gland, they display a circadian rhythm with higher levels at night paralleling melatonin synthesis. To gain more insight into the processes involved and the possible functions of these structures, a series of experiments were conducted in rodents. We studied the regional distribution of a molecular marker of pineal SRs, the kinesin motor KIF3A in the gland. Respective immunoreactivity was abundant in central regions of the gland where sympathetic fibers were less dense, and vice versa, revealing that intercellular communication between adjacent pinealocytes is enhanced …

endocrine systemmedicine.medical_specialtyEndocrinology Diabetes and MetabolismTRPV1KinesinsTRPV Cation ChannelsBiologyBradykininPineal GlandCalcium in biologyPinealocyteMembrane PotentialsMelatoninRats Sprague-DawleyCellular and Molecular Neurosciencechemistry.chemical_compoundPineal glandNorepinephrineEndocrinologyInternal medicinemedicineAnimalsMelatoninSynaptic ribbonEndocrine and Autonomic SystemsRatsEndocrinologymedicine.anatomical_structurenervous systemchemistrySynapseslipids (amino acids peptides and proteins)CalciumCapsaicinCapsazepineEndocrine glandmedicine.drugNeuroendocrinology
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Interaction of glutamic-acid-rich proteins with the cGMP signalling pathway in rod photoreceptors.

1999

The assembly of signalling molecules into macromolecular complexes (transducisomes) provides specificity, sensitivity and speed in intracellular signalling pathways. Rod photoreceptors in the eye contain an unusual set of glutamic-acid-rich proteins (GARPs) of unknown function. GARPs exist as two soluble forms, GARP1 and GARP2, and as a large cytoplasmic domain (GARP' part) of the beta-subunit of the cyclic GMP-gated channel. Here we identify GARPs as multivalent proteins that interact with the key players of cGMP signalling, phosphodiesterase and guanylate cyclase, and with a retina-specific ATP-binding cassette transporter (ABCR), through four, short, repetitive sequences. In electron mic…

genetic structuresPhosphodiesterase InhibitorsMolecular Sequence DataCyclic Nucleotide-Gated Cation ChannelsGlutamic AcidNerve Tissue ProteinsPlasma protein bindingBiologyIn Vitro TechniquesRetinal Rod Photoreceptor CellsAnimalsAmino Acid SequenceTransducinEye ProteinsPeptide sequenceCyclic GMPMultidisciplinaryPhosphoric Diester HydrolasesPhosphodiesteraseProteinsTransporterGlutamic acidRod Cell Outer SegmentRecombinant ProteinsCell biologyBiochemistryCytoplasmGuanylate CyclaseATP-Binding Cassette TransportersCattleTransducinSignal transductionProtein BindingSignal TransductionNature
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Resonance properties of GABAergic interneurons in immature GAD67-GFP mouse neocortex.

2014

Subthreshold resonance is a characteristic membrane property of different neuronal classes, is critically involved in the generation of network oscillations, and tunes the integration of synaptic inputs to particular frequency ranges. In order to investigate whether neocortical GABAergic interneurons show resonant behavior already during early postnatal development, we performed whole-cell patch-clamp recordings from visually identified interneurons in supragranular layers of parietal regions in coronal neocortical slices from postnatal day (P) P6-P13 GAD67-GFP knock-in mice. Subthreshold resonance was analyzed by injection of sinusoidal current with varying frequency. About 50% of the inve…

genetic structuresSubthreshold membrane potential oscillationsGlutamate decarboxylaseGreen Fluorescent ProteinsNeocortexSodium ChannelsMembrane PotentialsCalcium Channels T-TypeMiceInterneuronsParietal LobemedicineAnimalsGene Knock-In TechniquesGABAergic NeuronsMolecular BiologyMembrane potentialNeocortexSubthreshold conductionChemistryGlutamate Decarboxylasemusculoskeletal neural and ocular physiologyGeneral NeuroscienceResonanceMembrane hyperpolarizationmedicine.anatomical_structurenervous systemGABAergicNeurology (clinical)NeuroscienceDevelopmental BiologyBrain research
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Stromal Interaction Molecule 1 (STIM1) Is Involved in the Regulation of Mitochondrial Shape and Bioenergetics and Plays a Role in Oxidative Stress

2012

Calcium ions are involved in a plethora of cellular functions including cell death and mitochondrial energy metabolism. Store-operated Ca(2+) entry over the plasma membrane is activated by depletion of intracellular Ca(2+) stores and is mediated by the sensor STIM1 and the channel ORAI1. We compared cell death susceptibility to oxidative stress in STIM1 knock-out and ORAI1 knockdown mouse embryonic fibroblasts and in knock-out cells with reconstituted wild type and dominant active STIM1. We show that STIM1 and ORAI1 deficiency renders cells more susceptible to oxidative stress, which can be rescued by STIM1 and ORAI1 overexpression. STIM1 knock-out mitochondria are tubular, have a higher Ca…

inorganic chemicalsProgrammed cell deathORAI1 ProteinEukaryotic Initiation Factor-2Active Transport Cell NucleusApoptosisMitochondrionBiologymedicine.disease_causeBiochemistryMiceeIF-2 KinasemedicineAnimalsStromal Interaction Molecule 1PhosphorylationMolecular BiologyTranscription factorCells CulturedMice KnockoutEIF-2 kinaseMembrane GlycoproteinsEndoplasmic reticulumMolecular Bases of DiseaseSTIM1Cell BiologyFibroblastsEmbryo MammalianMitochondriaCell biologyOxidative Stressbiology.proteinCalciumCalcium ChannelsEnergy MetabolismIntracellularOxidative stressJournal of Biological Chemistry
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Glucose excites hypothalamic neurons through the activation of Transient Receptor Potential Canonical (TRPC) channels

2015

International audience

insulin secretiontrp channelfood intakeTRP channelsglucose sensing[ SDV.AEN ] Life Sciences [q-bio]/Food and Nutritionros[SDV.AEN] Life Sciences [q-bio]/Food and Nutrition[SDV.NEU]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC][SDV.NEU] Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]glucosehypothalamus[SDV.AEN]Life Sciences [q-bio]/Food and NutritionComputingMilieux_MISCELLANEOUS
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Alteration of loosely bound calcium in the guinea pig organ of Corti after treatment with diltiazem as calcium channel blocker

1997

After oral administration of the organic calcium channel blocker diltiazem to guinea pigs for 7 days, calcium ions were precipitated with potassium antimonate in the cochleae. The spatial distribution of the precipitates was studied by energy-filtering transmission electron microscopy and the amount of the ultrastructural reaction products formed was determined semiquantitatively by an image processing system. Compared with untreated control ears, the number of the formed precipitates was reduced drastically in the inner hair cells after diltiazem treatment. In addition, electron microscopic analysis revealed that the number of calcium precipitates attached at the basolateral membrane of th…

medicine.drug_classGuinea PigsAdministration Oralchemistry.chemical_elementCalcium channel blockerCalciumGuinea pigDiltiazemmedicineAnimalsDiltiazemOrgan of CortiLamina reticularisVoltage-dependent calcium channelbusiness.industryGeneral MedicineAnatomyCalcium Channel BlockersMicroscopy Electronmedicine.anatomical_structureOtorhinolaryngologychemistryOrgan of CortiBiophysicsUltrastructureCalciumCalcium Channelsbusinessmedicine.drugEuropean Archives of Oto-Rhino-Laryngology
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