Search results for " computing"
showing 10 items of 2075 documents
Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS
2014
This is a post-peer-review, pre-copyedit version of an article published in Lecture Notes in Computer Science. The final authenticated version is available online at: https://doi.org/10.1007/978-3-319-09873-9_57 [Abstract] High-throughput genotyping technologies allow the collection of up to a few million genetic markers (such as SNPs) of an individual within a few minutes of time. Detecting epistasis, such as 2-SNP interactions, in Genome-Wide Association Studies is an important but time consuming operation since statistical computations have to be performed for each pair of measured markers. In this work we present EpistSearch, a parallelized tool that, following the log-linear model appr…
UWSim-NET: An Open-Source Framework for Experimentation in Communications for Underwater Robotics
2019
The communication with the remotely operated vehicles (ROV) in underwater applications are usually based on umbilical cables. The increase in the number of ROVs in cooperative interventions motivates the interest in underwater wireless communications. They have a high impact in robotic applications because of their limited performance in underwater scenarios. In this work we present UWSim-NET, an extension of the simulator for underwater robotics UWSim, which is based on the Robot Operating System (ROS). UWSim-NET integrates a communications module based on Network Simulator 3 (NS3) that allows to model the physical and data link layers. Experiments demonstrating the capabilities of UWSim-N…
The automated pancreas: A review of technologies and clinical practice
2021
Insulin pumps and glucose sensors are effective in improving diabetes therapy and reducing acute complications. The combination of both devices using an algorithm-driven interoperable controller makes automated insulin delivery (AID) systems possible. Many AID systems have been tested in clinical trials and have proven safety and effectiveness. However, currently, none of these systems are available for routine use in children younger than 6 years in Europe. For continued use, both users and prescribers must have sound knowledge of the features of the individual AID systems. Presently, all systems require various user interactions (e.g. meal announcements) because fully automated systems ar…
Parallel filter estimation algorithm for segmentation on a LAN of workstations
1994
International audience
Parallel Schwarz methods for convection-dominated semilinear diffusion problems
2002
AbstractParallel two-level Schwarz methods are proposed for the numerical solution of convection-diffusion problems, with the emphasis on convection-dominated problems. Two variants of the methodology are investigated. They differ from each other by the type of boundary conditions (Dirichlet- or Neumann-type) posed on a part of the second-level subdomain interfaces. Convergence properties of the two-level Schwarz methods are experimentally compared with those of a variant of the standard multi-domain Schwarz alternating method. Numerical experiments performed on a distributed memory multiprocessor computer illustrate parallel efficiency of the methods.
Optimized Parallel Implementation of Face Detection based on GPU component
2015
Display Omitted An algorithm for face detection has been implemented on CPU.An acceleration of this algorithm on GPU migration.Performance of GPU implementation shows the effectiveness of this implementation.Another optimization method on GPU are operated. Face detection is an important aspect for various domains such as: biometrics, video surveillance and human computer interaction. Generally a generic face processing system includes a face detection, or recognition step, as well as tracking and rendering phase. In this paper, we develop a real-time and robust face detection implementation based on GPU component. Face detection is performed by adapting the Viola and Jones algorithm. We hav…
Parallel and scalable short-read alignment on multi-core clusters using UPC++
2016
[Abstract]: The growth of next-generation sequencing (NGS) datasets poses a challenge to the alignment of reads to reference genomes in terms of alignment quality and execution speed. Some available aligners have been shown to obtain high quality mappings at the expense of long execution times. Finding fast yet accurate software solutions is of high importance to research, since availability and size of NGS datasets continue to increase. In this work we present an efficient parallelization approach for NGS short-read alignment on multi-core clusters. Our approach takes advantage of a distributed shared memory programming model based on the new UPC++ language. Experimental results using the …
The combined distribution/assignment problem in transportation network planning: a parallel approach on hypercube architecture
1995
The joint distribution/assignment problem plays a central role in urban transport network planning. In this problem, according to the mathematical model proposed by S. P. Evans, the trips are iteratively calculated and assigned to the network in such a way that the resulting traffic flows pattern satisfies the selfish equilibrium condition. Unfortunately the number of variables and constraints increase hardly with the greatness of the networks causing long computational time for the equilibrium solution. In this paper an nCUBE 2 parallel computing architecture is employed to solve the combined problem and to asses the potential of MIMD machines to handle large scale transportation network p…
Classifier Optimized for Resource-constrained Pervasive Systems and Energy-efficiency
2017
Computational intelligence is often used in smart environment applications in order to determine a user’scontext. Many computational intelligence algorithms are complex and resource-consuming which can beproblematic for implementation devices such as FPGA:s, ASIC:s and low-level microcontrollers. Thesetypes of devices are, however, highly useful in pervasive and mobile computing due to their small size,energy-efficiency and ability to provide fast real-time responses. In this paper, we propose a classi-fier, CORPSE, specifically targeted for implementation in FPGA:s, ASIC:s or low-level microcontrollers.CORPSE has a small memory footprint, is computationally inexpensive, and is suitable for…
A distributed genetic algorithm for restoration of vertical line scratches
2008
This paper reports a distributed algorithm for the restoration of still frames corrupted by vertical line scratches. The restoration is here approached as an optimisation problem, and is solved using an ad-hoc Genetic Algorithm. The distributed algorithm is designed following a pipeline logical structure. The front end is a network of standard workstations with heterogeneous operating systems. The quality of image is appreciable and the computational time is quite low with respect the sequential version.