Search results for " computing"
showing 10 items of 2075 documents
Obtaining the Compatibility between Musicians Using Soft Computing
2010
Modeling the musical notes as fuzzy sets provides a flexible framework which better explains musicians’ daily practices. Taking into account one of the characteristics of the sound: the pitch (the frequency of a sound as perceived by human ear), a similarity relation between two notes can be defined. We call this relation compatibility. In the present work, we propose a method to asses the compatibility between musicians based on the compatibility of their interpretations of a given composition. In order to aggregate the compatibilities between the notes offered and then obtain the compatibility between musicians, we make use of an OWA operator. We illustrate our approach with a numerical e…
Monitoring wireless sensor networks through logical deductive processes
2006
This paper proposes a distributed multi-agent architecture for wireless sensor networks management, which exploits the dynamic reasoning capabilities of the Situation Calculus in order to emulate the reactive behavior of a human expert to fault situations. The information related to network events is generated by tunable agents installed on the network nodes and is collected by a logical entity for network managing where it is merged with general domain knowledge, with the aim of identifying the root causes of faults, and deciding on reparative actions. The logical inference system has being devised to carry out automated isolation, diagnosis, and, whenever possible, repair of network anoma…
A mathematical approach to predicting the percutaneous absorption enhancing effect of sodium lauryl sulphate.
2003
A study has been made of the effect of sodium lauryl sulphate (SLS) at several concentrations from 0.24 to 5% (w/w) on skin permeability. Seven model drugs were selected for this study on the basis of their lipophilicity as represented by their logP(oct) values (from -0.95 to 4.2). Skin pre-treatment with aqueous solutions of SLS does not increase the permeability coefficient of the most lipophilic compounds (logP(oct)> or =3). For the other compounds assayed the increase in the permeability coefficients depends on the concentration of SLS used in the skin pre-treatment, and on the lipophilicity of the compounds tested.The correlation between the inverse of SLS efficacy as an enhancer (1/ER…
Wearable PPG Sensor Matrix for Cardiovascular Assessment
2014
Wearable biomonitoring systems and smart textiles for healthcare are gaining more importance and significance in the R&D sphere due to their potentials in healthcare and sports. Such biomonitoring systems offer a number of advantages in comparison to the conventional equipment proving mobility of the wearer during a long-term monitoring of vital parameters. There are different options to set up the physiological monitoring using wireless and wearable technologies. One of the scenarios is addressing textiles as a carrier of electronics. Moreover, those differ by their functional applications, registered physiological parameters and technology solutions. Still, the most demanded biomonitoring…
Faster GPU-Accelerated Smith-Waterman Algorithm with Alignment Backtracking for Short DNA Sequences
2014
In this paper, we present a GPU-accelerated Smith-Waterman (SW) algorithm with Alignment Backtracking, called GSWAB, for short DNA sequences. This algorithm performs all-to-all pairwise alignments and retrieves optimal local alignments on CUDA-enabled GPUs. To facilitate fast alignment backtracking, we have investigated a tile-based SW implementation using the CUDA programming model. This tiled computing pattern enables us to more deeply explore the powerful compute capability of GPUs. We have evaluated the performance of GSWAB on a Kepler-based GeForce GTX Titan graphics card. The results show that GSWAB can achieve a performance of up to 56.8 GCUPS on large-scale datasets. Furthermore, ou…
SWAPHI: Smith-Waterman Protein Database Search on Xeon Phi Coprocessors
2014
The maximal sensitivity of the Smith-Waterman (SW) algorithm has enabled its wide use in biological sequence database search. Unfortunately, the high sensitivity comes at the expense of quadratic time complexity, which makes the algorithm computationally demanding for big databases. In this paper, we present SWAPHI, the first parallelized algorithm employing Xeon Phi coprocessors to accelerate SW protein database search. SWAPHI is designed based on the scale-and-vectorize approach, i.e. it boosts alignment speed by effectively utilizing both the coarse-grained parallelism from the many co-processing cores (scale) and the fine-grained parallelism from the 512-bit wide single instruction, mul…
GSWABE: faster GPU-accelerated sequence alignment with optimal alignment retrieval for short DNA sequences
2014
In this paper, we present GSWABE, a graphics processing unit GPU-accelerated pairwise sequence alignment algorithm for a collection of short DNA sequences. This algorithm supports all-to-all pairwise global, semi-global and local alignment, and retrieves optimal alignments on Compute Unified Device Architecture CUDA-enabled GPUs. All of the three alignment types are based on dynamic programming and share almost the same computational pattern. Thus, we have investigated a general tile-based approach to facilitating fast alignment by deeply exploring the powerful compute capability of CUDA-enabled GPUs. The performance of GSWABE has been evaluated on a Kepler-based Tesla K40 GPU using a varie…
Accelerating large-scale biological database search on Xeon Phi-based neo-heterogeneous architectures
2015
In this paper we present new parallelization techniques for searching large-scale biological sequence databases with the Smith-Waterman algorithm on Xeon Phi-based neoheterogenous architectures. In order to make full use of the compute power of both the multi-core CPU and the many-core Xeon Phi hardware, we use a collaborative computing scheme as well as hybrid parallelism. At the CPU side, we employ SSE intrinsics and multi-threading to implement SIMD parallelism. At the Xeon Phi side, we use Knights Corner vector instructions to gain more data parallelism. We have presented two dynamic task distribution schemes (thread level and device level) in order to achieve better load balancing. Fur…
Splitting the data cache: a survey
2000
Recent cache-memory research has focused on approaches that split the first-level data cache into two independent subcaches. The authors introduce a methodology for helping cache designers devise splitting schemes and survey a representative set of the published cache schemes.
Overlapping Community Structure in Co-authorship Networks: A Case Study
2014
Community structure is one of the key properties of real-world complex networks. It plays a crucial role in their behaviors and topology. While an important work has been done on the issue of community detection, very little attention has been devoted to the analysis of the community structure. In this paper, we present an extensive investigation of the overlapping community network deduced from a large-scale co-authorship network. The nodes of the overlapping community network represent the functional communities of the co-authorship network, and the links account for the fact that communities share some nodes in the co-authorship network. The comparative evaluation of the topological prop…