Search results for " dynamic"
showing 10 items of 4727 documents
Effects of the temporal scale of observation on the analysis of aquatic invertebrate metacommunities
2020
The development of metacommunity theory has boosted the implementation of numerous empirical tests with field data, mostly focused on the role of spatial and environmental gradients on metacommunity organization. These studies showed an important dependence of the results on the observational scale considered, i.e., spatial grain, sampling spacing, and extent. However, few works deal with time per se as a component explaining metacommunity structure, even when data from periodic sampling are available. We suggest adding time explicitly to metacommunity analysis, but taking into account that the temporal scale of observation could affect the estimation of the relative influence of environmen…
Biological control of potato soft rot caused by Dickeya solani and the survival of bacterial antagonists under cold storage conditions
2018
Dickeya and Pectobacterium are responsible for causing blackleg of plants and soft rot of tubers in storage and in the field, giving rise to losses in seed potato production. In an attempt to improve potato health, biocontrol activity of known and putative antagonists was screened using in vitro and in planta assays, followed by analysis of their persistence at various storage temperatures. Most antagonists had low survival on potato tuber surfaces at 4 °C. The population dynamics of the best low‐temperature tolerant strain and also the most efficient antagonist, Serratia plymuthica A30, along with Dickeya solani as target pathogen, was studied with TaqMan real‐time PCR throughout the stora…
Genome analysis of the monoclonal marbled crayfish reveals genetic separation over a short evolutionary timescale
2021
The marbled crayfish (Procambarus virginalis) represents a very recently evolved parthenogenetic freshwater crayfish species that has invaded diverse habitats in Europe and in Madagascar. However, population genetic analyses have been hindered by the homogeneous genetic structure of the population and the lack of suitable tools for data analysis. We have used whole-genome sequencing to characterize reference specimens from various known wild populations. In parallel, we established a whole-genome sequencing data analysis pipeline for the population genetic analysis of nearly monoclonal genomes. Our results provide evidence for systematic genetic differences between geographically separated …
Fungal spore diversity reflects substrate-specific deposition challenges
2018
AbstractSexual spores are important for the dispersal and population dynamics of fungi. They show remarkable morphological diversity, but the underlying forces driving spore evolution are poorly known. We investigated whether trophic status and substrate associations are associated with morphology in 787 macrofungal genera. We show that both spore size and ornamentation are associated with trophic specialization, so that large and ornamented spores are more probable in ectomycorrhizal than in saprotrophic genera. This suggests that spore ornamentation facilitates attachment to arthropod vectors, which ectomycorrhizal species may need to reach lower soil layers. Elongated spore shapes are mo…
Functional Implications of Multiple IM30 Oligomeric States
2019
The inner membrane-associated protein of 30 kDa (IM30), also known as the vesicle-inducing protein in plastids 1 (Vipp1), is essential for photo-autotrophic growth of cyanobacteria, algae and higher plants. While its exact function still remains largely elusive, it is commonly accepted that IM30 is crucially involved in thylakoid membrane biogenesis, stabilization and/or maintenance. A characteristic feature of IM30 is its intrinsic propensity to form large homo-oligomeric protein complexes. 15 years ago, it has been reported that these supercomplexes have a ring-shaped structure. However, the in vivo significance of these ring structures is not finally resolved yet and the formation of mor…
Modelling nonlinear dynamics of Crassulacean acid metabolism productivity and water use for global predictions
2021
Crassulacean acid metabolism (CAM) crops are important agricultural commodities in water-limited environments across the globe, yet modeling of CAM productivity lacks the sophistication of widely used C3 and C4 crop models, in part due to the complex responses of the CAM cycle to environmental conditions. This work builds on recent advances in CAM modeling to provide a framework for estimating CAM biomass yield and water use efficiency from basic principles. These advances, which integrate the CAM circadian rhythm with established models of carbon fixation, stomatal conductance, and the soil-plant-atmosphere continuum, are coupled to models of light attenuation, plant respiration, and bioma…
When phenotypes fail to illuminate underlying genetic processes in fish and fisheries science
2019
Abstract Advances in genetic and genomic technologies have become widely available and have potential to provide novel insights into fish biology and fisheries science. In the present overview, we explore cases for which genomic analyses have proven instrumental in the rejection of hypotheses that have been well-motivated based on phenotypic and ecological properties of individuals and populations. We focus on study systems for which information derived using genomic tools contradicts conclusions drawn from traditional fisheries science methodologies and assumptions. We further illustrate the non-intuitive interplay of genomics and ecology in Atlantic salmon (Salmo salar L.) owing to the re…
Environmentally‐induced noise dampens and reddens with increasing trophic level in a complex food web
2019
Stochastic variability of key abiotic factors including temperature, precipitation and the availability of light and nutrients greatly influences species’ ecological function and evolutionary fate. Despite such influence, ecologists have typically ignored the effect of abiotic stochasticity on the structure and dynamics of ecological networks. Here we help to fill that gap by advancing the theory of how abiotic stochasticity, in the form of environmental noise, affects the population dynamics of species within food webs. We do this by analysing an allometric trophic network model of Lake Constance subjected to positive (red), negative (blue), and non‐autocorrelated (white) abiotic temporal …
Eco‐evolutionary dynamics driven by fishing : from single species models to dynamic evolution within complex food webs
2020
Evidence of contemporary evolution across ecological time scales stimulated research on the eco‐evolutionary dynamics of natural populations. Aquatic systems provide a good setting to study eco‐evolutionary dynamics owing to a wealth of long‐term monitoring data and the detected trends in fish life‐history traits across intensively harvested marine and freshwater systems. In the present study, we focus on modelling approaches to simulate eco‐evolutionary dynamics of fishes and their ecosystems. Firstly, we review the development of modelling from single‐species to multispecies approaches. Secondly, we advance the current state‐of‐the‐art methodology by implementing evolution of life‐history…
Species’ ecological functionality alters the outcome of fish stocking success predicted by a food-web model
2018
Fish stocking is used worldwide in conservation and management, but its effects on food-web dynamics and ecosystem stability are poorly known. To better understand these effects and predict the outcomes of stocking, we used an empirically validated network model of a well-studied lake ecosystem. We simulate two stocking scenarios with two native fish species valuable for fishing. In the first scenario, we stock planktivorous fish (whitefish) larvae in the ecosystem. This leads to a 1% increase in adult whitefish biomasses and decreases the biomasses of the top predator (perch). In the second scenario, we also stock perch larvae in the ecosystem. This decreases the planktivorous whitefish an…