Search results for " elements"
showing 10 items of 732 documents
Context-dependent Pax-5 repression of a PU.1/NF-κB regulated reporter gene in B lineage cells
2001
Enhancers located in the 3' end of the locus in part regulate immunoglobulin heavy chain (IgH) gene expression. One of these enhancers, HS 1,2, is developmentally regulated by DNA binding proteins like NF-kappaB, Pax-5 and the protein complex NF-alphaP in B lineage cells. Here we report that NF-alphaP is the ets protein PU.1. A glutathione-S-transferase (GST)-pulldown assay demonstrated that PU.1 can physically interact with NF-kappaB in solution. Experiments in COS cells showed that PU.1 and NF-kappaB (p50/c-Rel) can activate transcription of an enhancer linked reporter gene. The paired domain protein Pax-5 has previously been shown to repress enhancer-dependent transcription. Additional c…
The Sea Urchin sns Insulator Blocks CMV Enhancer following Integration in Human Cells
2001
Insulators are a new class of genetic elements that attenuate enhancer function directionally. Previously, we characterized in sea urchin a 265-bp-long insulator, termed sns. To test insulator activity following stable integration in human cells, we placed sns between the CMV enhancer and a tk promoter up-stream of a GFP transgene of plasmid or retroviral vectors. In contrast to controls, cells transfected or transduced with insulated constructs displayed a barely detectable fluorescence. Southern blot and PCR ruled out vector rearrangement following integration into host DNA; RNase protection confirmed the enhancer blocking activity. Finally, we demonstrate that two cis-acting sequences, p…
Functional characterization of the enhancer blocking element of the sea urchin early histone gene cluster reveals insulator properties and three esse…
2000
Insulator elements can be functionally identified by their ability to shield promoters from regulators in a position-dependent manner or their ability to protect adjacent transgenes from position effects. We have previously reported the identification of a 265 bp sns DNA fragment at the 3' end of the sea urchin H2A early histone gene that blocked expression of a reporter gene in transgenic embryos when placed between the enhancer and the promoter. Here we show that sns interferes with enhancer-promoter interaction in a directional manner. When sns is placed between the H2A modulator and the inducible tet operator, the modulator is barred from interaction with the basal promoter. However, th…
Developing REE parameters for soil and sediment profile analysis to identify Neolithic anthropogenic signatures at Serpis Valley (Spain)
2020
In this study, patterns of rare earth elements (REE) have been developed and applied for the first time to sediments and soils to identify anthropogenic or natural layers in profiles sampled at several Neolithic settlements in the Serpis Valley area (Alicante, Spain). Most of these sites are characterized by dark brown paleosols that are easily distinguishable from the light brown paleosols of the valley. To demonstrate whether these strata are anthropogenic or natural requires a better geochemical understanding of sediment. Soil samples were taken across six different sites; four sites are associated with archaeological findings (sites BF, LP, PB and AC8); another one is from a natural sec…
Major ions and trace elements composition of rainwater around the two industrial areas of Milazzo and Priolo Gargallo (Sicily - Italy)
2023
This database shows the concentration of major ions and trace elements in rainwater from two polluted industrial areas of Sicily, Milazzo and Priolo Gargallo, collected from June 2018 to July 2019, through a network of 11 bulk collectors to sample bulk atmospheric deposition, for a total of 131 samples collected. Different sources, both natural and anthropogenic, for both major ions and trace elements have been recognised. This study also highlighted some critical issues with common methods of sampling and analysing atmospheric deposition. The analysis and comparison of two different aliquots, filtered and unfiltered rainwater, has shown that the filtration method removes from the sample a …
Mount Etna volcanic emissions signature on the chemical composition of bulk atmospheric deposition in Sicily, Italy.
2022
Mt. Etna, on the eastern coast of Sicily (Italy), is one of the most active and most intensely monitored volcanoes on the Earth, widely recognized as a big source of volcanic gases, such as CO2, SO2, halogens, and many trace elements, including technological critical elements (TCEs), to the atmosphere on a regional and global scale. Mt. Etna emissions account for a significant percentage of the worldwide average volcanic budget and especially during eruptive periods, its products can be dispersed over great distances and they influence the chemical composition of the atmosphere of other continents too. The current knowledge about the geochemical cycle of TCEs is still scarce, nevertheless, …
Chemical Composition of Scots Pine Bark as a Bioindicator of Environmental Quality in Riga, Latvia / Priežu Mizu ķīmiskais Sastāvs Kā Vides Stāvokļa …
2015
Abstract The chemical composition of pine bark was used for the determination of environmental quality in Rīga. Bark samples were collected at 54 sites in Rīga differing in vegetation and building area characteristics (urban forests, parks and cemeteries, dwelling houses, and streets and railway zones) and at 52 sites from rural areas in Latvia (background level). Concentrations of Ca, Mg, Na, K, Fe, Mn, Zn, Ni, Cu, Cd, Pb, and pH was determined in the samples. The results showed significantly higher concentrations of chemical elements in pine bark collected in Rīga, compared to background levels: Fe and Cu concentrations three times higher, and other elements - up to 1.8 times. The highest…
All-sky search in early O3 LIGO data for continuous gravitational-wave signals from unknown neutron stars in binary systems
2021
Rapidly spinning neutron stars are promising sources of continuous gravitational waves. Detecting such a signal would allow probing of the physical properties of matter under extreme conditions. A significant fraction of the known pulsar population belongs to binary systems. Searching for unknown neutron stars in binary systems requires specialized algorithms to address unknown orbital frequency modulations. We present a search for continuous gravitational waves emitted by neutron stars in binary systems in early data from the third observing run of the Advanced LIGO and Advanced Virgo detectors using the semicoherent, GPU-accelerated, binaryskyhough pipeline. The search analyzes the most s…
Isotope Fractionation of Selenium During Fungal Biomethylation by Alternaria alternata
2011
The natural abundance of stable Se isotopes may reflect sources and formation conditions of methylated Se. We aimed at (1) quantifying the degree of methylation of selenate [Se(VI)] and (hydro)selenite [Se(IV)] by the fungus Alternaria alternata at pH 4 and 7 and (2) determining the effects of these different Se sources and pH values on 82Se/76Se ratios (δ82/76Se) in methylselenides. Alternaria alternata was incubated with Se(VI) and Se(IV) in closed microcosms for 11-15 days and additionally with Se(IV) for 3-5 days at 30 °C. We determined Se concentrations and δ82/76Se values in source Se(VI) and Se(IV), media, fungi, and trapped methylselenides. In Se(VI) incubations, methylselenide vola…
In vivo assembly of chromatin on pBR322 sequences cloned into yeast plasmids
1989
Abstract In order to study the in vivo assembly of chromatin on prokaryotic DNA templates, we have transformed yeast cells with plasmids pAJ50 and pRB58, which contain pBR322 sequences. In both cases nucleosomes are assembled in vivo on pBR322 DNA, although the nucleosomes are not homogeneous in size. To explore whether there is any preference for nucleosome assembly along pBR322 sequences, we have used an indirect end labeling method. The results indicate that most nucleosomes are placed at random on pBR322, although the probability for histone octamers to interact with some short regions is somewhat reduced. These regions coincide with sequences in which the frequency distribution of nucl…