Search results for " function"

showing 10 items of 9395 documents

Social and emotional functions in three patients with medial frontal lobe damage including the anterior cingulate cortex

2006

INTRODUCTION: The aim of this study was to explore social and emotional functions in patients with medial frontal damage including the anterior cingulate cortex (ACC). METHODS: Three patients with medial frontal lobe lesions primarily involving the ACC performed tasks on motivational decision making, emotional facial expression recognition, and social cognition, including theory of mind (ToM). Their performance on these tasks was compared with age and education matched healthy controls. RESULTS: Patient performance on the motivational decision making and social situations tasks did not differ from controls. Selective emotional facial expression recognition impairment for fear was evident in…

Cingulate cortexAdultmedicine.medical_specialtyAdolescentCognitive NeuroscienceDecision MakingEmotionsEmotional functionsACC ToMAudiologyNeuropsychological Testsbehavioral disciplines and activitiesArticleCognitionTheory of mindmedicineExpressed emotionHumansSocial BehaviorAnterior cingulate cortexFacial expressionMotivationSettore M-PSI/02 - Psicobiologia E Psicologia FisiologicaBrain NeoplasmsCognitionGliomaMiddle AgedMagnetic Resonance ImagingFrontal Lobestomatognathic diseasesPsychiatry and Mental healthExpressed Emotionmedicine.anatomical_structureFrontal lobeSocial PerceptionGamblingBrain Damage ChronicFemalePsychologyNeurosciencepsychological phenomena and processes
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Assignment of Configuration in a Series of Dioxolanone-Type Secondary Metabolites fromGuignardia bidwellii- A Comparison of VCD and ECD Spectroscopy

2013

The absolute configurations of a series of phytotoxic dioxolanone-type secondary metabolites isolated from culture filtrates of the grape black rot fungus Guignardia bidwellii were determined by vibrational circular dichroism (VCD) spectroscopy in the mid-IR frequency range. Comparison of the recorded data with DFT calculations showed good agreement between experiment and theory for VCD, whereas electronic circular dichroism (ECD) data for the compounds matched poorly with the predicted spectra obtained by time-dependent DFT (TDDFT) calculations at the same level of theory.

Circular dichroismBlack rotbiologyComputational chemistryChemistryOrganic ChemistryVibrational circular dichroismAnalytical chemistryGuignardiaTime-dependent density functional theoryPhysical and Theoretical Chemistrybiology.organism_classificationSpectroscopyEuropean Journal of Organic Chemistry
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VCD studies on cyclic peptides assembled from L-α-amino acids and a trans-2-aminocyclopentane- or trans-2-aminocyclohexane carboxylic acid.

2010

The increasing interest in peptidomimetics of biological relevance prompted us to synthesize a series of cyclic peptides comprising trans-2-aminocyclohexane carboxylic acid (Achc) or trans-2-aminocyclopentane carboxylic acid (Acpc). NMR experiments in combination with MD calculations were performed to investigate the three-dimensional structure of the cyclic peptides. These data were compared to the conformational information obtained by electronic circular dichroism (ECD) and vibrational circular dichroism (VCD) spectroscopy. Experimental VCD spectra were compared to theoretical VCD spectra computed quantum chemically at B3LYP/6-31G(d) density functional theory (DFT) level. The good agreem…

Circular dichroismCyclohexanecarboxylic AcidsPeptidomimeticStereochemistryCarboxylic acidMolecular ConformationMolecular Dynamics SimulationBiochemistryelectronic circular dichroismPeptides CyclicMolecular dynamicsStructural BiologyDrug DiscoveryCycloleucineMolecular BiologyNuclear Magnetic Resonance BiomolecularPharmacologychemistry.chemical_classificationCyclohexylaminesCircular DichroismOrganic Chemistrycyclic peptidestrans-2-aminocyclopentaneGeneral Medicinevibrational circular dichroismCyclic peptideNMRAmino acidtrans-2-aminocyclohexane carboxylic acidchemistryVibrational circular dichroismMolecular MedicineDensity functional theorycarboxylic acidPeptidomimeticsJournal of peptide science : an official publication of the European Peptide Society
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Combined spectroscopic and theoretical analysis of the binding of a water-soluble perylene diimide to DNA/RNA polynucleotides and G-quadruplexes.

2021

We present here a combined spectroscopic and theoretical analysis of the binding of N,N’-bis(2-(1-piperazino)ethyl)-3,4,9,10-perylenetetracarboxylic acid diimide dichloride (PZPERY) to different biosubstrates. Absorbance titrations and circular dichroism experiments, melting studies and isothermal calorimetry (ITC) titrations reveal a picture where the binding to natural double-stranded DNA is very different from that to double and triple-stranded RNAs (poly(A)∙poly(U) and poly(U)∙poly(A)⁎poly(U)). As confirmed also by the structural and energetic details clarified by density functional theory (DFT) calculations, intercalation occurs for DNA, with a process driven by the combination of aggr…

Circular dichroismIntercalation (chemistry)PolynucleotidesSupramolecular chemistryMolecular dynamicsG-quadruplexChemistry Physical and theoreticalAnalytical ChemistryAggregationchemistry.chemical_compoundDiimideQuímica físicaIntercalationHumansInstrumentationPeryleneSpectroscopyAggregation; Density functional theory; Intercalation; Molecular dynamics; Sitting atop; Circular Dichroism; DNA; Humans; Polynucleotides; RNA; Water; G-Quadruplexes; PeryleneCircular DichroismWaterIsothermal titration calorimetryDNAAtomic and Molecular Physics and OpticsSitting atopG-QuadruplexesCrystallographychemistrySettore CHIM/03 - Chimica Generale E InorganicaPolynucleotideDensity functional theoryRNAPeryleneSpectrochimica acta. Part A, Molecular and biomolecular spectroscopy
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New Austalides from the Sponge-Associated Fungus Aspergillus sp.

2011

Chromatographic separation of a crude extract obtained from the fungus Aspergillus sp., isolated from the Mediterranean sponge Tethya aurantium, yielded five new meroterpenoid metabolites, austalides M–Q (1–5), together with nine known compounds (6–13). The structures of the new compounds were unambiguously elucidated on the basis of extensive 1D and 2D NMR methods and by mass spectral analysis. Furthermore, the absolute configurations of 1 and 4 were determined by time-dependent density functional theory electronic circular dichroism (TDDFT ECD) calculations, allowing the assignment of the absolute configuration of analogous compounds 2, 3, and 5. The calculations revealed that the conform…

Circular dichroismbiologyStereochemistryChemistryOrganic ChemistryAbsolute configurationTime-dependent density functional theoryChromophorebiology.organism_classificationPhthalidechemistry.chemical_compoundTermészettudományokPhysical and Theoretical ChemistryTethya aurantiumKémiai tudományokCytotoxicityTwo-dimensional nuclear magnetic resonance spectroscopyEuropean Journal of Organic Chemistry
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Transcriptome profiling of citrus fruit response to huanglongbing disease.

2010

Huanglongbing (HLB) or "citrus greening" is the most destructive citrus disease worldwide. In this work, we studied host responses of citrus to infection with Candidatus Liberibacter asiaticus (CaLas) using next-generation sequencing technologies. A deep mRNA profile was obtained from peel of healthy and HLB- affected fruit. It was followed by pathway and protein-protein network analysis and quantitative real time PCR analysis of highly regulated genes. We identified differentially regulated pathways and constructed networks that provide a deep insight into the metabolism of affected fruit. Data mining revealed that HLB enhanced transcription of genes involved in the light reactions of phot…

CitrusProtein FoldingGene Identification and Analysislcsh:MedicinePlant ScienceTranscriptomechemistry.chemical_compoundRNA interferencePlant Growth RegulatorsGene Expression Regulation PlantModelsGene expressionPlant Genomics2.1 Biological and endogenous factorsPhotosynthesisAetiologylcsh:SciencePlant Growth and DevelopmentPlant PestsMultidisciplinaryProtein StabilityJasmonic acidfood and beveragesHigh-Throughput Nucleotide SequencingAgriculturePlantsCell biologyCarbohydrate MetabolismResearch ArticleSignal TransductionGeneral Science & TechnologyPlant PathogensProtein degradationBiologyModels BiologicalFruitsMolecular GeneticsRhizobiaceaeSettore AGR/07 - Genetica AgrariaHeat shock proteinBotanyGeneticsGene RegulationGene NetworksBiologyTranscription factorPlant DiseasesAnalysis of VarianceGene Expression Profilinglcsh:RCitrus HLB next-generation sequencing candidatus liberibacterComputational BiologyPlantPlant PathologyBiologicalWRKY protein domainGene expression profilingchemistryGene Expression Regulationlcsh:QGene expressionGene FunctionTranscriptomeTranscription Factors
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Pseudocomplements in sum-ordered partial semirings

2007

We study a particular way of introducing pseudocomplementation in ordered semigroups with zero, and characterise the class of those pseudocomplemented semigroups, termed g-semigroups here, that admit a Glivenko type theorem (the pseudocomplements form a Boolean algebra). Some further results are obtained for g-semirings – those sum-ordered partially additive semirings whose multiplicative part is a g-semigroup. In particular, we introduce the notion of a partial Stone semiring and show that several well-known elementary characteristics of Stone algebras have analogues for such semirings.

Class (set theory)Algebra and Number TheorySemigroupApplied MathematicsBoolean algebra (structure)Multiplicative functionZero (complex analysis)Type (model theory)SemiringKleene algebraCombinatoricssymbols.namesakesymbolsComputer Science::Formal Languages and Automata TheoryMathematicsDiscussiones Mathematicae - General Algebra and Applications
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Duality theory for multi-marginal optimal transport with repulsive costs in metric spaces

2018

In this paper we extend the duality theory of the multi-marginal optimal transport problem for cost functions depending on a decreasing function of the distance (not necessarily bounded). This class of cost functions appears in the context of SCE Density Functional Theory introduced in "Strong-interaction limit of density-functional theory" by M. Seidl.

Class (set theory)Control and OptimizationComputer Science::Information Retrieval010102 general mathematicsFOS: Physical sciencesContext (language use)Function (mathematics)Mathematical Physics (math-ph)01 natural sciences010101 applied mathematicsComputational MathematicsMetric spaceMathematics - Analysis of PDEsControl and Systems EngineeringOptimization and Control (math.OC)Bounded functionFOS: MathematicsApplied mathematicsDensity functional theoryLimit (mathematics)0101 mathematicsMathematics - Optimization and ControlMathematical PhysicsMathematicsAnalysis of PDEs (math.AP)
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Disorder and interactions in systems out of equilibrium : the exact independent-particle picture from density functional theory

2017

Density functional theory (DFT) exploits an independent-particle-system construction to replicate the densities and current of an interacting system. This construction is used here to access the exact effective potential and bias of non-equilibrium systems with disorder and interactions. Our results show that interactions smoothen the effective disorder landscape, but do not necessarily increase the current, due to the competition of disorder screening and effective bias. This puts forward DFT as a diagnostic tool to understand disorder screening in a wide class of interacting disordered systems.

Class (set theory)Current (mathematics)Non-equilibrium thermodynamicsFOS: Physical sciences02 engineering and technologyCondensed Matter::Disordered Systems and Neural Networks01 natural sciencesCondensed Matter - Strongly Correlated ElectronsInformationSystems_GENERALdisordered systems0103 physical sciencesMesoscale and Nanoscale Physics (cond-mat.mes-hall)strongly correlated systemsDisorder screeningStatistical physics010306 general physicsdensity functional theoryPhysicsta114Condensed Matter - Mesoscale and Nanoscale PhysicsStrongly Correlated Electrons (cond-mat.str-el)tiheysfunktionaaliteoriaDisordered Systems and Neural Networks (cond-mat.dis-nn)Condensed Matter - Disordered Systems and Neural Networks021001 nanoscience & nanotechnologynonequilibrium Green's functionParticleDensity functional theory0210 nano-technology
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Stochastic Stability Analysis for Markovian Jump Neutral Nonlinear Systems

2012

In this paper, the stability problem is studied for a class of Markovian jump neutral nonlinear systems with time-varying delay. By Lyapunov-Krasovskii function approach, a novel mean-square exponential stability criterion is derived for the situations that the system's transition rates are completely accessible, partially accessible and non-accessible, respectively. Moreover, the developed stability criterion is extended to the systems with different bounded sector nonlinear constraints. Finally, some numerical examples are provided to illustrate the effectiveness of the proposed methods.

Class (set theory)Engineeringbusiness.industryStability criterionStochastic stability; Markovian jump systemFunction (mathematics)nonlinear systemStability (probability)lcsh:QA75.5-76.95Computer Science ApplicationsNonlinear systemMarkovian jumpExponential stabilityControl and Systems EngineeringControl theoryModeling and SimulationBounded functionApplied mathematicslcsh:Electronic computers. Computer sciencebusinessSoftwareModeling, Identification and Control
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