Search results for " genetics"

showing 10 items of 4169 documents

Topological congruence between phylogenies of Anacanthorus spp. (Monogenea: Dactylogyridae) and their Characiformes (Actinopterygii) hosts: A case of…

2017

Cophylogenetic studies aim at testing specific hypotheses to understand the nature of coevolving associations between sets of organisms, such as host and parasites. Monogeneans and their hosts provide and interesting platform for these studies due to their high host specificity. In this context, the objective of the present study was to establish whether the relationship between Anacanthorus spp. with their hosts from the upper Paraná River and its tributaries can be explained by means of cospeciation processes. Nine fish species and 14 monogenean species, most of them host specific, were studied. Partial DNA sequences of the genes RAG1, 16S and COI of the fish hosts and of the genes ITS2, …

0106 biological sciences0301 basic medicineSpeciationlcsh:MedicineAnimal PhylogeneticsCharaciformes01 natural sciencesDatabase and Informatics MethodsRNA Ribosomal 16Slcsh:ScienceDNA extractionPhylogenyData ManagementMultidisciplinaryGeographyPhylogenetic treebiologyEukaryotaPhylogenetic AnalysisPhylogeneticsFreshwater FishPhylogeographyBiogeographyVertebratesCharaciformesSequence AnalysisMonogeneaResearch ArticleComputer and Information SciencesEvolutionary ProcessesBioinformaticsContext (language use)Topology010603 evolutionary biologyHost-Parasite InteractionsElectron Transport Complex IV03 medical and health sciencesExtraction techniquesPhylogeneticsGeneticsAnimalsEvolutionary SystematicsParasite EvolutionTaxonomyHomeodomain ProteinsEvolutionary BiologyPopulation BiologyHost (biology)lcsh:REcology and Environmental SciencesOrganismsBiology and Life SciencesDNASequence Analysis DNAbiology.organism_classificationDactylogyridaeResearch and analysis methodsPhylogeographyFish030104 developmental biologyPlatyhelminthsEarth Scienceslcsh:QParasitologyZoologySequence AlignmentPopulation GeneticsPLOS ONE
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Neogene paleogeography provides context for understanding the origin and spatial distribution of cryptic diversity in a widespread Balkan freshwater …

2017

BackgroundThe Balkans are a major biodiversity and endemism hotspot, worldwide. Among the freshwater biota, amphipods are known for their high cryptic diversity. However, little is known about the temporal and paleogeographic aspects of their evolutionary history. We used paleogeography as a framework for understanding the onset of diversification inGammarus roeselii: (1) we hypothesised that, given the high number of isolated waterbodies in the Balkans, the species is characterised by high level of cryptic diversity, even on a local scale; (2) the long geological history of the region might promote pre-Pleistocene divergence between lineages; (3) given thatG. roeseliithrives both in lakes …

0106 biological sciences0301 basic medicineSpecies complexPleistoceneBiodiversityBayesian analysislcsh:Medicine[ SDV.BBM.BM ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologyBiology010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesPhylogeneticsBalkan peninsulaEndemismMolecular Biology[ SDV.BID ] Life Sciences [q-bio]/BiodiversityPhylogenetic treeEcologyAncient lakesGeneral Neurosciencelcsh:RBiotaGeneral MedicineEvolutionary StudiesGammaridsPhylogeographyPhylogeography030104 developmental biologyBiogeographyAquaculture Fisheries and Fish ScienceGeneral Agricultural and Biological SciencesZoologyPeerJ
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Energy intake functions and energy budgets of ectotherms and endotherms derived from their ontogenetic growth in body mass and timing of sexual matur…

2017

Abstract Ectothermic and endothermic vertebrates differ not only in their source of body temperature (environment vs. metabolism), but also in growth patterns, in timing of sexual maturation within life, and energy intake functions. Here, we present a mathematical model applicable to ectothermic and endothermic vertebrates. It is designed to test whether differences in the timing of sexual maturation within an animal's life (age at which sexual maturity is reached vs. longevity) together with its ontogenetic gain in body mass (growth curve) can predict the energy intake throughout the animal's life (food intake curve) and can explain differences in energy partitioning (between growth, repro…

0106 biological sciences0301 basic medicineStatistics and ProbabilityOntogenymedia_common.quotation_subjectZoologyGrowth010603 evolutionary biology01 natural sciencesEndothermic processGeneral Biochemistry Genetics and Molecular BiologyBody Mass IndexBody Temperature03 medical and health sciencesbiology.animalAnimalsSexual maturitySexual Maturationmedia_commonGeneral Immunology and MicrobiologybiologyApplied MathematicsLongevityVertebrateThermogenesisGeneral MedicineGrowth curve (biology)Models Theoretical030104 developmental biologyModeling and SimulationEctothermVertebratesReproductionEnergy IntakeGeneral Agricultural and Biological SciencesJournal of Theoretical Biology
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Widespread plant specialization in the polyphagous planthopper Hyalesthes obsoletus (Cixiidae), a major vector of stolbur phytoplasma: Evidence of cr…

2018

The stolbur phytoplasma vector Hyalesthes obsoletus is generally considered as a polyphagous species associated with numerous wild and cultivated plants. However, recent research in southeastern Europe, the distribution centre of H. obsoletus and the area of most stolbur-inflicted crop diseases, points toward specific host-plant associations of the vector, indicating specific vector-based transmission routes. Here, we study the specificity of populations associated with four host-plants using mitochondrial and nuclear genetic markers, and we evaluate the evolution of host-shifts in H. obsoletus. Host-plant use was confirmed for Convolvulus arvensis, Urtica dioica, Vitex agnus-castus and Cre…

0106 biological sciences0301 basic medicineSympatryHereditySpeciationlcsh:MedicineDisease Vectors01 natural sciencesBiochemistryGeographical LocationsHyalestheslcsh:SciencePhylogenyEnergy-Producing OrganellesMultidisciplinarybiologyGeographyEcologyCixiidaeMitochondrial DNAMitochondriaEuropeNucleic acidsSympatryGenetic MappingPhylogeographyBiogeographySympatric speciationHost-Pathogen InteractionsCellular Structures and OrganellesResearch ArticleGenetic MarkersSpecies complexPhytoplasmaEvolutionary ProcessesEcological MetricsForms of DNAZoologyBioenergetics010603 evolutionary biologyHemiptera03 medical and health sciencesPlanthopperGenetic variationCryptic SpeciationGeneticsAnimalsPlant DiseasesEvolutionary BiologyPopulation Biologylcsh:REcology and Environmental SciencesBiology and Life SciencesSpecies DiversityDNACell Biology15. Life on landbiology.organism_classificationInsect Vectors030104 developmental biologyHaplotypesGenetic markerGenome MitochondrialPeople and PlacesEarth Scienceslcsh:QPopulation Genetics
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HorTILLUS—A Rich and Renewable Source of Induced Mutations for Forward/Reverse Genetics and Pre-breeding Programs in Barley (Hordeum vulgare L.)

2018

TILLING (Targeting Induced Local Lesions IN Genomes) is a strategy used for functional analysis of genes that combines the classical mutagenesis and a rapid, high-throughput identification of mutations within a gene of interest. TILLING has been initially developed as a discovery platform for functional genomics, but soon it has become a valuable tool in development of desired alleles for crop breeding, alternative to transgenic approach. Here we present the HorTILLUS ( Hordeum-TILLING-University of Silesia) population created for spring barley cultivar "Sebastian" after double-treatment of seeds with two chemical mutagens: sodium azide (NaN3) and N-methyl-N-nitrosourea (MNU). The populatio…

0106 biological sciences0301 basic medicineTILLINGmedicine.medical_specialtyTILLINGMutantPopulationMutagenesis (molecular biology technique)Plant Sciencelcsh:Plant cultureBiologymedicine.disease_cause01 natural sciencesMNUreverse genetics03 medical and health sciencessodium azideMolecular geneticsmedicinelcsh:SB1-1110educationOriginal ResearchGeneticsMutationeducation.field_of_studybarleyfood and beveragesReverse genetics030104 developmental biologyHordeum vulgaremutation010606 plant biology & botanyFrontiers in Plant Science
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Glycolipid Biosurfactant Production from Waste Cooking Oils by Yeast: Review of Substrates, Producers and Products

2021

Biosurfactants are a microbially synthesized alternative to synthetic surfactants, one of the most important bulk chemicals. Some yeast species are proven to be exceptional biosurfactant producers, while others are emerging producers. A set of factors affects the type, amount, and properties of the biosurfactant produced, as well as the environmental impact and costs of biosurfactant’s production. Exploring waste cooking oil as a substrate for biosurfactants’ production serves as an effective cost-cutting strategy, yet it has some limitations. This review explores the existing knowledge on utilizing waste cooking oil as a feedstock to produce glycolipid biosurfactants by yeast. The review f…

0106 biological sciences0301 basic medicineTP500-660Cooking oilChemistryCommodity chemicalsFermentation industries. Beverages. Alcoholcircular economyPlant Sciencemicrobial surfactantsSubstrate (biology)Raw materialPulp and paper industry01 natural sciencesBiochemistry Genetics and Molecular Biology (miscellaneous)Yeastwaste valorization03 medical and health sciences030104 developmental biologyGlycolipidused cooking oil010608 biotechnologynonconventional yeastsFood ScienceFermentation
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Variable crab camouflage patterns defeat search image formation.

2021

Understanding what maintains the broad spectrum of variation in animal phenotypes and how this influences survival is a key question in biology. Frequency dependent selection – where predators temporarily focus on one morph at the expense of others by forming a “search image” – can help explain this phenomenon. However, past work has never tested real prey colour patterns, and rarely considered the role of different types of camouflage. Using a novel citizen science computer experiment that presented crab “prey” to humans against natural backgrounds in specific sequences, we were able to test a range of key hypotheses concerning the interactions between predator learning, camouflage and mor…

0106 biological sciences0301 basic medicineTime FactorsComputer scienceQH301-705.5BrachyuraBehavioural ecologyFrequency-dependent selectionMedicine (miscellaneous)ColorVariation (game tree)010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyArticlePredationtaskuravut03 medical and health sciencesDisruptive colorationCitizen scienceAnimalsHumansexperimental evolutionBiology (General)muuntelu (biologia)PredatorEcosystemsuojaväriMechanism (biology)Pigmentationbehavioural ecologyAdaptation Physiological030104 developmental biologyPhenotypeVideo GamesExperimental evolutionEvolutionary biologyCamouflagePattern Recognition PhysiologicalPredatory BehaviorfenotyyppiGeneral Agricultural and Biological SciencesColor PerceptionCommunications biology
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Adaptation to environmental stress at different timescales

2020

Environments are changing rapidly, and to cope with these changes, organisms have to adapt. Adaptation can take many shapes and occur at different speeds, depending on the type of response, the trait, the population, and the environmental conditions. The biodiversity crisis that we are currently facing illustrates that numerous species and populations are not capable of adapting with sufficient speed to ongoing environmental changes. Here, we discuss current knowledge on the ability of animals and plants to adapt to environmental stress on different timescales, mainly focusing on thermal stress and ectotherms. We discuss within-generation responses that can be fast and induced within minute…

0106 biological sciences0301 basic medicineTime FactorsEnvironmental changeAcclimatizationClimate Changemedia_common.quotation_subjectPopulationBiodiversity010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyEpigenesis Genetic03 medical and health sciencesHistory and Philosophy of ScienceStress PhysiologicalevolutionAnimalsHumansEcosystemeducationEcosystemPlant Physiological Phenomenamedia_commoneducation.field_of_studybusiness.industryGeneral NeuroscienceEnvironmental resource managementEnvironmental ExposurePlants15. Life on landAdaptation Physiologicalenvironmental stress030104 developmental biology13. Climate actionEctothermplasticityTraitEnvironmental sciencePsychological resilienceAdaptationbusinesstrangenerational effects
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Impact of Rearing Conditions on the Ambrosia Beetle’s Microbiome

2018

Ambrosia beetles, along with termites and leafcutter ants, are the only fungus-farming lineages within the tree of life. Bacteria harbored by ambrosia beetles may play an essential role in the nutritional symbiotic interactions with their associated fungi

0106 biological sciences0301 basic medicineXyleborus bispinatusZoologyFungusXyleborus volvulus<i>Xyleborus</i> sp.Ambrosia beetle01 natural sciencesArticleGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesmicrobiotaAmbrosiaMicrobiomelcsh:ScienceEcology Evolution Behavior and SystematicsmetagenomicsbiologyXyleborus affinisfungifungusPaleontologybiology.organism_classificationXyleborus sp.metabolic capabilities010602 entomology030104 developmental biologySpace and Planetary ScienceMetagenomicslcsh:QLife
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2016

AbstractPRDM9 is currently the sole speciation gene found in vertebrates causing hybrid sterility probably due to incompatible alleles. Its role in defining the double strand break loci during the meiotic prophase I is crucial for proper chromosome segregation. Therefore, the rapid turnover of the loci determining zinc finger array seems to be causative for incompatibilities. We here investigated the zinc finger domain-containing exon of PRDM9 in 23 tarsiers. Tarsiers, the most basal extant haplorhine primates, exhibit two frameshifting indels at the 5′-end of the array. The first mutation event interrupts the reading frame and function while the second compensates both. The fixation of thi…

0106 biological sciences0301 basic medicineZinc fingerGeneticsMultidisciplinaryBiologybiology.organism_classification010603 evolutionary biology01 natural sciencesTarsier03 medical and health sciencesFixation (population genetics)030104 developmental biologyGenetic driftAlleleIndelPRDM9TarsiusScientific Reports
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