Search results for " phylogenetics"
showing 10 items of 176 documents
Molecular phylogeny of Atripliceae (Chenopodioideae, Chenopodiaceae): Implications for systematics, biogeography, flower and fruit evolution, and the…
2011
Premise of the study : Atripliceae (Chenopodiaceae), including Atriplex (300 spp.) as the largest genus of the family, are an ecologically important group of steppes and semideserts worldwide. Relationships in Atripliceae are poorly understood due to obscure and potentially convergent morphological characters. Methods : Using sequence variation of two chloroplast markers ( rbcL gene, atpB-rbcL spacer) and one nrDNA marker (ITS) analyzed with BEAST, we investigated the systematics and biogeography of Atripliceae. We surveyed fl ower morphology and fruit anatomy to study the evolution of fland fruits in the tribe. Key results : Female fl owers with persistent foliar cover (the diagnosti…
Molecular Phylogenetic Analyses in Court Trials
2010
Molecular phylogenetics allows reconstructing of the genealogy and evolutionary history of organisms from information on their nucleotide or amino acid sequences. When sequences are derived from very fast evolving organisms, such as ribonucleic acid (RNA) viruses, changes accumulate in a few days or weeks, thus allowing the reconstruction of very recent evolutionary events in the history of these populations. One such event is the transmission of one of these viruses, for instance human immunodeficiency virus (HIV) or hepatitis C virus (HCV), from an infected person to another. This occasionally results in a legal demand seeking for compensation and/or punishment for the transmitter. Hence,…
Une chrysomèle contre l'ambroisie, est-ce réaliste ?
2016
Context - Despite intensive management practices carried out by stakeholders, common ragweed control is presently not sufficient to limit the spread of this annual invasive plant. Ali classical methods (mowing, chemical weeding, etc.) are limited in terms of efficiency. ln order to achieve a better management in the different habitats occupied by the plant, it is necessary to design innovative methods that could increase contra efficiency. The recent accidental introduction of a ragweed natural enemy in ltalia raises the question of the use of biological control agents. Could the regulation by a new phytophagous insect be considered as an integrated way of management in order to reduce the …
Permineralized coniferophytes from the Autun Basin: specimens from two new localities of Renault zone 3
2015
International audience; Four zones yielding silicified plant remains have been recognized in the Autun Basin by Renault (1893-1896). Zones 2, 3 and 4, characterized by Autunian plants, correspond to the successive formations of Igornay and Muse (lower Autunian), and Surmoulin-Millery (upper Autunian). Their paleobotanical content, together with that preserved as adpressions in the same formations, document paleofloral changes on the western side of the Tethys within a time interval extending from the latest Ghzelian (uppermost Pennsylvanian) to the early Sakmarian (lower Permian) (Broutin et al. 1999). The analyses realized so far indicate a progressive replacement of wetland plants by taxa…
La lutte biologique contre l'ambroisie à feuille d'armoise illustrée par l'exemple d'Ophraella communa : quels intérêts et quelles limites
2016
Common ragweed (Ambrosia artemisiifolia) was introduced in France over 150 years ago and its spreading across France now seems inexorable. The specific biology of this summer annual creates new problems for the managers of the various habitats where the plant can be found. The reduced possibility, or even the impossibility, to use traditional control means in certain environment conditions brings managers to consider biological control as one of the few possible means for slowing down the spread, or even pushing back the distribution area, of this invasive and allergenic plant. With Ophraella communa as an example, a reflection is presented on the benefit-risk balance of the introduction of…
Les Gonorynchiformes fossiles : distribution et diversité.
2007
8 pages; Longtemps placés dans les clupéiformes, les Gonorynchiformes ont rejoint les Ostariophysi au sein desquels ils représentent le groupe-frère des Otophysi. La monophylie du groupe est maintenant bien établie tant par les données morphologiques que moléculaires. De nos jours, quatre familles sont représentées par sept genres (dont cinq d'eau douce) et 35 espèces (dont 28 d'eau douce). Les Gonorynchiformes fossiles sont connus depuis le Crétacé basal (soit 145-140 millions d'années) jusqu'au Miocène basal (soit 23,5-20 millions d'années), et plusieurs taxons ont de grandes extensions temporelles. Ils sont représentés par environ 18 genres et 34 espèces. Avec moins de 50 localités fossi…
Crustacés amphipodes de surface (Gammares d'eau douce)
2012
EA MERS CT3; National audience; L’ouvrage de Piscart & Bollache présente une clef de détermination actualisée des amphipodes de surface de la France métropolitaine. Les espèces natives et invasives sont décrites, avec une carte de la répartition de chaque espèce. L’ouvrage est agrémenté d’une partie décrivant l’écologie des amphipodes, leur comportement et leurs pathogènes les plus fréquemment rencontrés.
The monophyly and evolution of Cynara L. (Asteraceae) sensu lato: evidence from the Internal Transcribed Spacer region of nrDNA
2005
The monophyly and evolution of Cynara was investigated using ITS sequence data. Parsimony analysis supports the monophyly of Cynara sensu lato, i.e. including the distinctive taxa C. humilis and C. tournefortii. This contradicts the recent decision to create a new monotypic genus Arcyna for C. tournefortii. A hypothesised close relationship between C. tournefortii and Silybum Adans. is also refuted. Four of the five species of Cynara, for which multiple accessions were sequenced, were shown to be monophyletic but C. baetica was found to be non-monophyletic. Free energy estimates for ITS1 secondary structure and conservation of the 5.8S region suggest that this is not due to the occurrence o…
Complete phylogeny and historical biogeography of true rosefinches (Aves:Carpodacus)
2013
True rosefinches (Aves: Carpodacus) are restricted to Eurasia, and 19 out of 25 species occur in the Sino-Himalayas, making this the likely centre of origin. To test this hypothesis, suggested species splits had to be evaluated and potential further cryptic diversity unravelled. A taxon-complete dated molecular phylogeny was reconstructed using maximum-likelihood and Bayesian methods. Maximum-parsimony and likelihood approaches were applied to deduce ancestral areas. Rosefinches, including the widespread Carpodacus erythrinus (Pallas, 1770), originated in south-west China (and the Himalayas) 14 Mya, and gave rise to a smaller clade consisting of C. erythrinus, Haematospiza sipahi (Hodgson, …
An analysis of inter- and intraspecific genetic variabilities in theKluyveromyces marxianusgroup of yeast species for the reconsideration of theK. la…
2002
In the present work, we analyse the sequences of the 5.8S rRNA gene and the two internal transcribed spacers 1 and 2 (5.8S-ITS region), obtained from 39 strains belonging to the species Kluyveromyces aestuarii, K. dobzhanskii, K. lactis and K. marxianus, K. nonfermentans and K. wickerhamii, to solve the phylogenetic relationships among these species and also to determine the possible genetic basis for the delimitation of the two currently accepted K. lactis varieties: lactis, including lactose-positive strains isolated from dairy products, and drosophilarum, comprising lactose-negative strains isolated from insects and plant exudates. The determination of the phylogenetic relationships with…