Search results for "ABUNDANCE"
showing 10 items of 529 documents
Using Deep Learning to Extrapolate Protein Expression Measurements
2020
Mass spectrometry (MS)-based quantitative proteomics experiments typically assay a subset of up to 60% of the ≈20 000 human protein coding genes. Computational methods for imputing the missing values using RNA expression data usually allow only for imputations of proteins measured in at least some of the samples. In silico methods for comprehensively estimating abundances across all proteins are still missing. Here, a novel method is proposed using deep learning to extrapolate the observed protein expression values in label-free MS experiments to all proteins, leveraging gene functional annotations and RNA measurements as key predictive attributes. This method is tested on four datasets, in…
A quantitative survey of the benthic meiofauna in the Gulf Of Riga (eastern Baltic Sea), with special reference to the structure of nematode assembla…
1998
Abstract The Gulf of Riga is relatively shallow and considered to be one of the most eutrophied areas in the Baltic Sea with an annual primary production estimated to 290 gCm-2 yr-1. Meiofauna sampling was carried out at 30 stations homogeneously spread over the Gulf of Riga, varying in depth and sediment structure. The average meiofauna abundance was 4800 ind/10 cm2, with a maximum of 17000 ind/10 cm2. Harpacticoid copepods were abundant all over the Gulf, averaging 425 ind/10 cm2. The highest number was found close to the mouth of the river Daugava, up to 1400 ind/10 cm2. Harpacticoids were significantly more abundant in sediments with medium organic content (loss on ignition (LOI) 5–10%)…
Rotational quenching of monodeuterated water by hydrogen molecules
2011
Cross sections and rate coefficients for low lying rotational transitions in HDO induced by para and ortho-H(2) collisions are presented for the first time. Calculations have been performed at the close-coupling and coupled-states levels with the deuterated variant of the H(2)O-H(2) interaction potential of Valiron et al. [J. Chem. Phys., 2008, 129, 134306]. Rate coefficients are presented for temperatures between 5 and 100 K and are compared to the corresponding rates for H(2)O and D(2)O. Significant differences caused by the isotopic substitution, in particular the C(2v) symmetry breaking, are observed. Finally, our rates are found to be significantly larger (by up to three orders of magn…
Microbiome response to foam fractionation and ozonation in RAS
2022
Efficient water treatment is required to maintain high water quality and control microbial growth in recirculating aquaculture systems (RAS). Here, we examined the effects of two treatment methods, ozonation and foam fractionation, separately and combined, on the microbiology in twelve identical experimental RAS with rainbow trout (Oncorhyncus mykiss) during 8 weeks. Microbes suspended in water and growing in biofilter biofilms were examined using flow cytometry analysis and high throughput sequencing of the 16S rRNA gene. The results showed that foam fractionation did not cause large changes in abundance or overall community composition of free-living microbes. Instead, through decreasing …
Electronic effects in the production of smali dianionic gold clusters by electron attachment on to stored Au-n, n = 12-28
1999
Abstract Single charged gold clusters Au n -, 12 n 28, are stored in a Penning trap, size selected and transformed into dianions, Au2- n by the application of an electron beam. At the onset of dianion production, that is that range of cluster sizes n where the smallest doubly charged clusters are observed, the measured intensity ratio of the dianions to their precursors is not a continuous function of cluster size. Instead, there is a strong odd-even effect and a comparatively intense signal of Au2-18 The observed structures are very reminiscent of similar phenomena in the abundance spectra of metal clusters as observed by Knight et al. (1984, Phys. Rev. Lett., 52, 2141), which gave ris…
The endpoint of the rp-process
1997
Abstract The endpoint of rp-process nucleosynthesis in X-ray bursts determines the fuel consumption, the energy generation, and the abundance pattern of the produced nuclei. To investigate the time structure of rp-process nucleosynthesis, we used a nuclear reaction network including nuclei from H to Sn. We found that if 2p-capture reactions are included, the synthesis of nuclei heavier than Kr proceeds faster than previously thought. Therefore, in most X-ray bursts large amounts of nuclei in the A=80–100 region are expected to be produced. With an escape factor of about 1%, X-ray bursts could account for the large observed solar system abundances of the light p-nuclei like 92 Mo and 96 Ru t…
Nest aggregation and reproductive synchrony promote Lesser Kestrel Falco naumanni seasonal fitness
2013
Several factors promote coloniality by enhancing the fitness of colony members. In birds, spatial proximity among nests, breeder abundance and reproductive synchrony have been proposed as primary factors responsible for enhanced colonial defence and foraging success, which, in turn, enhance reproductive success. Whether these factors function synergistically or antagonistically remains, however, an open question due to the absence of an integrated analysis of their effects on fitness. We studied a large population of the Lesser Kestrel, Falco naumanni, a facultative colonial species, breeding in colonies of different sizes in their typical pseudo-steppe habitat. We quantified both the singu…
Changes in group size during resource shifts reveal drivers of sociality across the tree of life
2020
ABSTRACTFrom biofilms to whale pods, organisms have repeatedly converged on sociality as a strategy to improve individual fitness. Yet, it remains challenging to identify the most important drivers—and by extension, the evolutionary mechanisms—of sociality for particular species. Here, we present a conceptual framework, literature review, and model demonstrating that the direction and magnitude of the response of group size to sudden resource shifts provides a strong indication of the underlying drivers of sociality. We catalog six functionally distinct mechanisms related to the acquisition of resources, and we model these mechanisms’ effects on the survival of individuals foraging in group…
Ecological Analysis of the Helminth Community of Microtus lusitanicus (Gerbe, 1879) (Rodentia) in Asturias (NW Spain)
2021
Simple Summary The Lusitanian pine vole is an endemic rodent of the Iberian Peninsula, which has a burrowing behaviour and prefers to live underground. It feeds on bark and roots causing severe damage to trees. In Asturias (NW Spain), this species is considered a pest causing economic losses in apple orchards, damaging the tree, and sometimes even causing its death. With the aim to shed light on the helminth community of this rodent pest species and to elucidate which intrinsic and extrinsic factors affect its helminth species, a faunistic-ecological study was carried out. For this purpose, our own collection of 710 voles from several orchards of various locations in Asturias was used. The …
On the obvious positive interspecific relationship between abundance and distribution: a reply to Blackburn and Gaston
2009
Thomas Kuhn described normal science as ‘ … research firmly based upon one or more past scientific achievements … ’, that ‘ … does not aim at novelties of fact or theory and, when successful, finds none’ ([Kuhn 1996][1]). Kuhn divides scientific enterprise into three faces: normal