Search results for "ALGORITHM"

"Indexing structures for approximate string matching

2003

In this paper we give the first, to our knowledge, structures and corresponding algorithms for approximate indexing, by considering the Hamming distance, having the following properties. i) Their size is linear times a polylog of the size of the text on average. ii) For each pattern x, the time spent by our algorithms for finding the list occ(x) of all occurrences of a pattern x in the text, up to a certain distance, is proportional on average to |x| + |occ(x)|, under an additional but realistic hypothesis.

On the construction of classes of suffix trees for square matrices: Algorithms and applications

1995

Given an n × n TEXT matrix with entries defined over an ordered alphabet σ, we introduce 4n−1 classes of index data structures for TEXT. Those indices are informally the two-dimensional analog of the suffix tree of a string [15], allowing on-line searches and statistics to be performed on TEXT. We provide one simple algorithm that efficiently builds any chosen index in those classes in O(n2 log n) worst case time using O(n2) space. The algorithm can be modified to require optimal O(n2) expected time for bounded σ.

An algorithm to find all paths between two nodes in a graph

1990

A reconstruction algorithm for L-convex polyominoes

2006

AbstractWe give an algorithm that uniquely reconstruct an L-convex polyomino from the size of some special paths, called bordered L-paths.

On the number of prime divisors of the order of elliptic curves modulo p

2005

Almost Tight Bound for the Union of Fat Tetrahedra in Three Dimensions

2007

For any AND-OR formula of size N, there exists a bounded-error N1/2+o(1)-time quantum algorithm, based on a discrete-time quantum walk, that evaluates this formula on a black-box input. Balanced, or "approximately balanced," formulas can be evaluated in O(radicN) queries, which is optimal. It follows that the (2-o(1))th power of the quantum query complexity is a lower bound on the formula size, almost solving in the positive an open problem posed by Laplante, Lee and Szegedy.

Ambainis-Freivalds’ Algorithm for Measure-Once Automata

2001

An algorithm given by Ambainis and Freivalds [1] constructs a quantum finite automaton (QFA) with O(log p) states recognizing the language Lp = {ai| i is divisible by p} with probability 1 - Ɛ , for any Ɛ > 0 and arbitrary prime p. In [4] we gave examples showing that the algorithm is applicable also to quantum automata of very limited size. However, the Ambainis-Freivalds algoritm is tailored to constructing a measure-many QFA (defined by Kondacs andWatrous [2]), which cannot be implemented on existing quantum computers. In this paper we modify the algorithm to construct a measure-once QFA of Moore and Crutchfield [3] and give examples of parameters for this automaton. We show for the lang…

Span programs for functions with constant-sized 1-certificates

2012

Besides the Hidden Subgroup Problem, the second large class of quantum speed-ups is for functions with constant-sized 1-certificates. This includes the OR function, solvable by the Grover algorithm, the element distinctness, the triangle and other problems. The usual way to solve them is by quantum walk on the Johnson graph. We propose a solution for the same problems using span programs. The span program is a computational model equivalent to the quantum query algorithm in its strength, and yet very different in its outfit. We prove the power of our approach by designing a quantum algorithm for the triangle problem with query complexity O(n35/27) that is better than O(n13/10) of the best p…

Irredundant tandem motifs

2014

Eliminating the possible redundancy from a set of candidate motifs occurring in an input string is fundamental in many applications. The existing techniques proposed to extract irredundant motifs are not suitable when the motifs to search for are structured, i.e., they are made of two (or several) subwords that co-occur in a text string s of length n. The main effort of this work is studying and characterizing a compact class of tandem motifs, that is, pairs of substrings {m1, m2} occurring in tandem within a maximum distance of d symbols in s, where d is an integer constant given in input. To this aim, we first introduce the concept of maximality, related to four specific conditions that h…

Complexity of decision trees for boolean functions

2004

For every positive integer k we present an example of a Boolean function f/sub k/ of n = (/sub k//sup 2k/) + 2k variables, an optimal deterministic tree T/sub k/' for f/sub k/ of complexity 2k + 1 as well as a nondeterministic decision tree T/sub k/ computing f/sub k/. with complexity k + 2; thus of complexity about 1/2 of the optimal deterministic decision tree. Certain leaves of T/sub k/ are called priority leaves. For every input a /spl isin/ {0, 1}/sup n/ if any of the parallel computation reaches a priority leaves then its label is f/sub k/ (a). If the priority leaves are not reached at all then the label on any of the remaining leaves reached by the computation is f/sub k/. (a).