Search results for "ALTER"
showing 10 items of 2368 documents
tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing
2019
AbstractTraditionally, the functional analysis of gene expression data has used pathway and network enrichment algorithms. These methods are usually gene rather than transcript centric and hence fall short to unravel functional roles associated to posttranscriptional regulatory mechanisms such as Alternative Splicing (AS) and Alternative PolyAdenylation (APA), jointly referred here as Alternative Transcript Processing (AltTP). Moreover, short-read RNA-seq has serious limitations to resolve full-length transcripts, further complicating the study of isoform expression. Recent advances in long-read sequencing open exciting opportunities for studying isoform biology and function. However, there…
Purification and Characterization of the Soluble Interleukin-6 Receptor from Human Plasma and Identification of An Isoform Generated through Alternat…
1996
The soluble human interleukin-6 receptor (shIL6R) was purified from human plasma. In a single immunoaffinity purification step a 140000-fold enrichment with a yield of 95% was achieved. A subsequent IL-6 affinity chromatography resulted in a homogeneous receptor preparation but only in a yield of less than 5%. The biological activity of the soluble receptor was clearly demonstrated by its ability to induce the synthesis of the acute-phase protein α1-antichymotrypsin in HepG2 cells stably transfected with IL-6. Upon gel filtration, the native shIL6R showed an apparent molecular mass of 93 kDa. Analysis by SDS/PAGE revealed an apparent molecular mass of 65 kDa for the soluble receptor. Deglyc…
Autoregulation of NFATc1/A Expression Facilitates Effector T Cells to Escape from Rapid Apoptosis
2002
AbstractThreshold levels of individual NFAT factors appear to be critical for apoptosis induction in effector T cells. In these cells, the short isoform A of NFATc1 is induced to high levels due to the autoregulation of the NFATc1 promoter P1 by NFATs. P1 is located within a CpG island in front of exon 1, represents a DNase I hypersensitive chromatin site, and harbors several sites for binding of inducible transcription factors, including a tandemly arranged NFAT site. A second promoter, P2, before exon 2, is not controlled by NFATs and directs synthesis of the longer NFATc1/B+C isoforms. Contrary to other NFATs, NFATc1/A is unable to promote apoptosis, suggesting that NFATc1/A enhances eff…
PTHrP in differentiating human mesenchymal stem cells: Transcript isoform expression, promoter methylation, and protein accumulation
2013
Human PTHrP gene displays a complex organization with nine exons producing diverse mRNA variants due to alternative splicing at 5' and 3' ends and the existence of three different transcriptional promoters (P1, P2 and P3), two of which (P2 and P3) contain CpG islands. It is known that the expression of PTHrP isoforms may be differentially regulated in a developmental stage- and tissue-specific manner. To search for novel molecular markers of stemness/differentiation, here we have examined isoform expression in fat-derived mesenchymal stem cells both maintained in stem conditions and induced toward adipo- and osteogenesis. In addition, the expression of the splicing isoforms derived from P2 …
Expression of the Acetylcholine Receptor α-Subunit Gene is Associated with Paraneoplastic Myasthenia Gravis in Mixed Thymoma
2000
Myasthenia gravis (MG) is an autoimmune disease caused by autoantibodies against the acetylcholine receptor (AChR) at the neuromuscular junction [1]. The muscular AChR has been extensively characterized [2], but the etiology of MG is still obscure. Whether the muscular AChR or another (auto)antigen plays a role during the initiation of MG is unknown [3]. The muscular AChR is a pentameric ion channel composed of four different subunits. The α-subunit contains the acetylcholine binding site and the main epitopes recognized by MG autoantibodies [2]. The human muscle AChR α-subunit exists as two isoforms, P3A- and P3A+ [4]. This is a result of alternative splicing of the P3A exon located betwee…
Expression of fibronectin splice variants and oncofetal glycosylated fibronectin in the synovial membranes of patients with rheumatoid arthritis and …
2002
The aim of this study was to define and compare the expression of fibronectin (Fn) isoforms in synovial tissue of patients with rheumatoid arthritis (RA) and osteoarthritis (OA).Using monoclonal antibodies specific for total Fn, extra domain (ED)-A Fn, ED-B Fn, and oncofetal glycosylated Fn, we studied the expression of the Fn isoforms in synovium. Furthermore, in situ hybridization for the detection of ED-B Fn mRNA including a double labeling technique for the detection of cell type was applied.Strong expression of total Fn, ED-A Fn, oncofetal glycosylated Fn and, to a lesser extent, ED-B Fn could be demonstrated in the synovial lining layer in both RA and OA. Stromal and vessel expression…
Bomba rice conservation with a natural biofilm
2018
[EN] The chemical composition of commercial Syzygium aromaticum, Cinnamomum verum, and Laurus nobilis essential oils as well as their antifungal activity against four pathogenic fungi isolated from Mediterranean rice grains has been investigated. Eighty nine compounds accounting for between 98.5 and 99.4% of the total essential oil were identified. The phenylpropanoids eugenol (89.37 ± 0.29%) and eugenol (56.34 ± 0.41%), followed by eugenol acetate (19.48 ± 0.13%) were, respectively, the main compounds in clove and cinnamon essential oils, whereas large amounts of the oxygenated monoterpenes 1,8-cineole (58.07 ± 0.83%) and ¿-terpinyl acetate (13.05 ± 0.44%) were found in bay leaf essential …
Revisió sistemàtica dels tractaments per al trastorn d'identitat dissociatiu
2015
La finalitat d'aquesta revisió sistemàtica va ser determinar l'eficàcia dels mètodes terapèutics per al Trastorn d'Identitat Dissociatiu (DID), en què es diferencia entre tractament psicoterapèutic i farmacològic, així com el tractament per a pacients amb comorbilitat. D'un total de 1.209 referències obtingudes a la base de dades PsycInfo, s'hi seleccionaren 15 estudis a partir dels criteris de selecció establerts prèviament. Un dels estudis s'ha obtingut a la base de dades Web of Science. Els criteris seguits per seleccionar els articles són aquells amb pacients adults diagnosticats de DID que rebien alguna o ambdues modalitats terapèutiques esmentades més amunt, i foren rebutjats aquells …
Post-mortem enamel surface texture alteration during taphonomic processes—do experimental approaches reflect natural phenomena?
2022
Experimental approaches are often used to better understand the mechanisms behindand consequences of post-mortem alteration on proxies for diet reconstruction.Dental microwear texture analysis (DMTA) is such a dietary proxy, using dental wearfeatures in extant and extinct taxa to reconstruct feeding behaviour and mechanicalfood properties. In fossil specimens especially, DMTA can be biased by post-mortemalteration caused by mechanical or chemical alteration of the enamel surface. Herewe performed three different dental surface alteration experiments to assess the effectof common taphonomic processes by simplifying them: (1) tumbling in sedimentsuspension to simulate fluvial transport, (2) s…
Violation of the equivalence principle from light scalar dark matter
2018
In this paper, we study the local observational consequences of a violation of the Einstein Equivalence Principle induced by models of light scalar Dark Matter (DM). We focus on two different models where the scalar field couples linearly or quadratically to the standard model of matter fields. For both these cases, we derive the solutions of the scalar field. We also derive from first principles the expressions for two types of observables: (i) the local comparison of two atomic sensors that are differently sensitive to the constants of Nature and (ii) the local differential acceleration between two test-masses with different compositions. For the linear coupling, we recover that the signa…