Search results for "ANCIENT DNA"
showing 10 items of 124 documents
Ancient DNA provides no evidence for independent domestication of cattle in Mesolithic Rosenhof, Northern Germany
2008
Abstract Recent studies of modern and ancient mtDNA in domesticated and wild cattle has indicated that members of the extinct Near Eastern aurochs population (Bos primigenius primigenius) were the wild progenitors of European domesticated cattle (Bos taurus) (Bollongino, R., Edwards, C.J., Burger, J., Alt, K.W., Bradley, D.G., 2006. Early history of European domestic cattle as revealed by ancient DNA. Biol. Lett. 2, 155–159; Edwards, C.J., Bollongino, R., Scheu, A., Chamberlain, A., Tresset, A., Vigne, J.-D., Baird, J.F., Larson, G., Ho, S.Y.W., Heupink, T.H., Shapiro, B., Freeman, A.R., Thomas, M.G., Arbogast, R.-M., Arndt, B., Bartosiewicz, L., Benecke, N., Budja, M., Chaix, L., Choyke, A…
Temperature monitoring in archaeological animal bone samples in the Near East arid area, before, during and after excavation
2008
Summary In order to estimate experimentally the intensity and amplitude of thermal shocks during and after excavation, we monitored temperatures of archaeological bones on the field at three Syrian sites of the arid steppe, Qaramel, Dja'de and Aswad. Water cleaning and sun drying appear to be the most damaging steps, with temperature variations of ca. 11,000 °C/h and 84 °C/h, respectively. Ancient DNA (aDNA) bone samples kept between −7 and +12 °C from their extraction to the lab suffered much lower thermal variations (6 °C/h). Estimation of the temperature variations at different depths in the soil suggests that aDNA has suffered negative thermal conditions shortly after burial and again d…
On the origin of mongrels: evolutionary history of free-breeding dogs in Eurasia
2015
Although a large part of the global domestic dog population is free-ranging and free-breeding, knowledge of genetic diversity in these free-breeding dogs (FBDs) and their ancestry relations to pure-breed dogs is limited, and the indigenous status of FBDs in Asia is still uncertain. We analyse genome-wide SNP variability of FBDs across Eurasia, and show that they display weak genetic structure and are genetically distinct from pure-breed dogs rather than constituting an admixture of breeds. Our results suggest that modern European breeds originated locally from European FBDs. East Asian and Arctic breeds show closest affinity to East Asian FBDs, and they both represent the earliest branching…
The genomic history of the Aegean palatial civilizations
2021
Summary The Cycladic, the Minoan, and the Helladic (Mycenaean) cultures define the Bronze Age (BA) of Greece. Urbanism, complex social structures, craft and agricultural specialization, and the earliest forms of writing characterize this iconic period. We sequenced six Early to Middle BA whole genomes, along with 11 mitochondrial genomes, sampled from the three BA cultures of the Aegean Sea. The Early BA (EBA) genomes are homogeneous and derive most of their ancestry from Neolithic Aegeans, contrary to earlier hypotheses that the Neolithic-EBA cultural transition was due to massive population turnover. EBA Aegeans were shaped by relatively small-scale migration from East of the Aegean, as e…
Using Y-chromosome capture enrichment to resolve haplogroup H2 shows new evidence for a two-path Neolithic expansion to Western Europe
2021
Uniparentally-inherited markers on mitochondrial DNA (mtDNA) and the non-recombining regions of the Y chromosome (NRY), have been used for the past 30 years to investigate the history of humans from a maternal and paternal perspective. Researchers have preferred mtDNA due to its abundance in the cells, and comparatively high substitution rate. Conversely, the NRY is less susceptible to back mutations and saturation, and is potentially more informative than mtDNA owing to its longer sequence length. However, due to comparatively poor NRY coverage via shotgun sequencing, and the relatively low and biased representation of Y-chromosome variants on capture assays such as the 1240 k, ancient DNA…
Towards understanding the abundance of non-pollen palynomorphs : A comparison of fossil algae, algal pigments and sedaDNA from temperate lake sedimen…
2018
Given the increased interest in non-pollen palynomorphs (microscopic objects other than pollen identified from pollen slides) in palaeoecological studies, it is necessary to seek a deeper understanding of the reliability of these results. We combined quantitative information of algal pigments and sedimentary ancient DNA (sedaDNA) of phylotaxonomical resolution to validate the richness and abundance of fossil algae in the sediment of a small temperate lake. For the first time, fossil and sedaDNA algae data were combined in a composite data-set and used to reconstruct algae turnover rates over the last 14,500 years. This comparison serves as both an example of howfossil algae can be used to a…
The never-ending story of geologically ancient DNA: was the model plantArabidopsisthe source of Miocene Dominican amber?
2013
Studies characterizing geologically ancient DNA in plants are rare, and all have reportedly obtained plastid DNA sequences from Miocene fossils in a remarkable state of preservation. Recently, a group made the extraordinary claim of having amplified a geologically ancient Miocene plastid DNA fragment (the rbcL gene) from Dominican amber nuggets, and the organismal source of this DNA was identified as Hymenaea protera (Fabaceae), the plant that produced the fossilized Dominican amber. Assuming that the Miocene sequence is error-free, reanalysis of the sequence indicates it is probably a technical artifact or an rbcL pseudogene. Furthermore, BLAST similarity searches and phylogenetic analyses…
Population dynamic of the extinct European aurochs: genetic evidence of a north-south differentiation pattern and no evidence of post-glacial expansi…
2010
International audience; Abstract Background The aurochs ( Bos primigenius ) was a large bovine that ranged over almost the entirety of the Eurasian continent and North Africa. It is the wild ancestor of the modern cattle ( Bos taurus ), and went extinct in 1627 probably as a consequence of human hunting and the progressive reduction of its habitat. To investigate in detail the genetic history of this species and to compare the population dynamics in different European areas, we analysed Bos primigenius remains from various sites across Italy. Results Fourteen samples provided ancient DNA fragments from the mitochondrial hypervariable region. Our data, jointly analysed with previously publis…
The genetic history of Europeans.
2012
The evolutionary history of modern humans is characterized by numerous migrations driven by environmental change, population pressures, and cultural innovations. In Europe, the events most widely considered to have had a major impact on patterns of genetic diversity are the initial colonization of the continent by anatomically modern humans (AMH), the last glacial maximum, and the Neolithic transition. For some decades it was assumed that the geographical structuring of genetic diversity within Europe was mainly the result of gene flow during and soon after the Neolithic transition, but recent advances in next-generation sequencing (NGS) technologies, computer simulation modeling, and ancie…
The diverse genetic origins of a Classical period Greek army.
2022
Trade and colonization caused an unprecedented increase in Mediterranean human mobility in the first millennium BCE. Often seen as a dividing force, warfare is in fact another catalyst of culture contact. We provide insight into the demographic dynamics of ancient warfare by reporting genome-wide data from fifth-century soldiers who fought for the army of the Greek Sicilian colony of Himera, along with representatives of the civilian population, nearby indigenous settlements, and 96 present-day individuals from Italy and Greece. Unlike the rest of the sample, many soldiers had ancestral origins in northern Europe, the Steppe, and the Caucasus. Integrating genetic, archaeological, isotopic, …