Search results for "Abstract data type"
showing 10 items of 1140 documents
Segmented relationships to model erosion of regression effect in Cox regression
2010
In this article we propose a parsimonious parameterisation to model the so-called erosion of the covariate effect in the Cox model, namely a covariate effect approaching to zero as the follow-up time increases. The proposed parameterisation is based on the segmented relationship where proper constraints are set to accomodate for the erosion. Relevant hypothesis testing is discussed. The approach is illustrated on two historical datasets in the survival analysis literature, and some simulation studies are presented to show how the proposed framework leads to a test for a global effect with good power as compared with alternative procedures. Finally, possible generalisations are also present…
An algebraic representation of Steiner triple systems of order 13
2021
Abstract In this paper we construct an incidence structure isomorphic to a Steiner triple system of order 13 by defining a set B of twentysix vectors in the 13-dimensional vector space V = GF ( 5 ) 13 , with the property that there exist precisely thirteen 6-subsets of B whose elements sum up to zero in V , which can also be characterized as the intersections of B with thirteen linear hyperplanes of V .
Bond-based 3D-chiral linear indices: Theory and QSAR applications to central chirality codification
2008
The recently introduced non-stochastic and stochastic bond-based linear indices are been generalized to codify chemical structure information for chiral drugs, making use of a trigonometric 3D-chirality correction factor. These improved modified descriptors are applied to several well-known data sets to validate each one of them. Particularly, Cramer's steroid data set has become a benchmark for the assessment of novel quantitative structure activity relationship methods. This data set has been used by several researchers using 3D-QSAR approaches such as Comparative Molecular Field Analysis, Molecular Quantum Similarity Measures, Comparative Molecular Moment Analysis, E-state, Mapping Prope…
Set-valued and fuzzy stochastic differential equations driven by semimartingales
2013
Abstract In the paper we present set-valued and fuzzy stochastic integrals with respect to semimartingale integrators as well as their main properties. Then we study the existence of solutions to set-valued and fuzzy-set-valued stochastic differential equations driven by semimartingales. The stability of solutions is also established.
A convolutional neural network for virtual screening of molecular fingerprints
2019
In the last few years, Deep Learning (DL) gained more and more impact on drug design because it allows a huge increase of the prediction accuracy in many stages of such a complex process. In this paper a Virtual Screening (VS) procedure based on Convolutional Neural Networks (CNN) is presented, that is aimed at classifying a set of candidate compounds as regards their biological activity on a particular target protein. The model has been trained on a dataset of active/inactive compounds with respect to the Cyclin-Dependent Kinase 1 (CDK1) a very important protein family, which is heavily involved in regulating the cell cycle. One qualifying point of the proposed approach is the use of molec…
Measuring diversity. A review and an empirical analysis
2021
Abstract Maximum diversity problems arise in many practical settings from facility location to social networks, and constitute an important class of NP-hard problems in combinatorial optimization. There has been a growing interest in these problems in recent years, and different mathematical programming models have been proposed to capture the notion of diversity. They basically consist of selecting a subset of elements of a given set in such a way that a measure based on their pairwise distances is maximized to achieve dispersion or representativeness. In this paper, we perform an exhaustive comparison of four mathematical models to achieve diversity over the public domain library MDPLIB, …
Complex Detection in Protein-Protein Interaction Networks: A Compact Overview for Researchers and Practitioners
2012
The availability of large volumes of protein-protein interaction data has allowed the study of biological networks to unveil the complex structure and organization in the cell. It has been recognized by biologists that proteins interacting with each other often participate in the same biological processes, and that protein modules may be often associated with specific biological functions. Thus the detection of protein complexes is an important research problem in systems biology. In this review, recent graph-based approaches to clustering protein interaction networks are described and classified with respect to common peculiarities. The goal is that of providing a useful guide and referenc…
On the definition of generic multi-layered ontologies for urban applications
2000
Cooperation of information systems is essential for providing decision support for urban management applications. This involves sharing data across collections of the heterogeneous information systems that are used to manage large urban infrastructures. The objective of this work is to define a spatial ontology to describe key features of urban applications, providing a foundation for semantic reconciliation among heterogeneous spatial information sources. We propose a multi-layered ontologies definition framework consisting of ontology layers which are composed of a generic functional structure and one or more domain ontologies. The functional structure embodies general ontological concept…
Two-dimensional filters for structured text
1997
The paper introduces a method for defining filters for structured text. In the method, the text structure is originally defined by a grammar consisting of a set of productions. To describe the information interests, a two-dimensional template is first created interactively from the grammar to show the structure of a set of textual elements, at a chosen level of detail. The template depicts the hierarchical structure of the elements and indicates also optionality, alternatives, and iteration in the structure. Then, the template is filled by constraints and annotations. The constraints allow giving conditions to the content of parts, to the position of parts in an ordered set of parts, and to…
Is the Eco-label EU Decision for hard coverings really capable of capturing the environmental performances of the marble productive chain? A field ve…
2014
Purpose This work intends to show whether the Eco-label EU Decision for hard coverings, in which marble is contemplated among hard coverings as a natural product, is really capable of capturing the environmental performances of the marble productive chain, in other words whether it is actually viable for the natural products, like marble. Methods After a preliminary critical analysis of the suitability formarble of the current EU Decision (2009/607/EC), a classical life cycle assessment (LCA) methodology has been applied on the field to the marble “Perlato di Sicilia.” More specifically, the whole productive chain of a couple of firms treating the “Perlato di Sicilia” marble has been examin…