Search results for "Animal Shells"

showing 10 items of 30 documents

Pmarg-pearlin is a matrix protein involved in nacre framework formation in the pearl oyster Pinctada margaritifera.

2011

11 pages; International audience; The shell of pearl oysters is organized in multiple layers of CaCO(3) crystallites packed together in an organic matrix. Relationships between the components of the organic matrix and mechanisms of nacre formation currently constitute the main focus of research into biomineralization. In this study, we characterized the pearlin protein from the oyster Pinctada margaritifera (Pmarg); this shares structural features with other members of a matrix protein family, N14/N16/pearlin. Pmarg pearlin exhibits calcium- and chitin-binding properties. Pmarg pearlin transcripts are distinctively localized in the mineralizing tissue responsible for nacre formation. More s…

OysterPteriidaeMolecular Sequence Dataengineering.materialBiologyMatrix (biology)010402 general chemistry01 natural sciencesBiochemistry03 medical and health sciencesProtein structureAnimal Shellsbiology.animalAnimalsAmino Acid SequencePinctadaRNA Messenger[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular Biologyglycoproteins030304 developmental biologyorganic matrix0303 health sciencesExtracellular Matrix ProteinsEcologyAragoniteOrganic ChemistryPinctada margaritiferabiology.organism_classificationbiomineralization[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterials0104 chemical sciencesCell biologyprotein structuresengineeringMolecular Medicinepearl oysterPearlBiomineralization
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Shell Extracts from the Marine Bivalve Pecten maximus Regulate the Synthesis of Extracellular Matrix in Primary Cultured Human Skin Fibroblasts

2014

International audience; Mollusc shells are composed of more than 95% calcium carbonate and less than 5% of an organic matrix consisting mostly of proteins, glycoproteins and polysaccharides. Previous studies have elucidated the biological activities of the shell matrices from bivalve molluscs on skin, especially on the expression of the extracellular matrix components of fibroblasts. In this work, we have investigated the potential biological activities of shell matrix components extracted from the shell of the scallop Pecten maximus on human fibroblasts in primary culture. Firstly, we demonstrated that shell matrix components had different effects on general cellular activities. Secondly, …

Pathologylcsh:Medicine[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC][CHIM.THER]Chemical Sciences/Medicinal ChemistryBiochemistryExtracellular matrixCell SignalingMolecular Cell Biologylcsh:ScienceSkinConnective Tissue Cellschemistry.chemical_classificationPectenMultidisciplinary[ CHIM.THER ] Chemical Sciences/Medicinal ChemistryExtracellular MatrixCell biologymedicine.anatomical_structureConnective TissueScallopCytochemistryAnatomyCellular Structures and OrganellesType I collagenResearch ArticleBiotechnologySignal Transductionmedicine.medical_specialtyPrimary Cell CultureExtracellular Matrix SignalingBiologyBiomaterialsDermisAnimal ShellsmedicineAnimalsHumansPecten maximus14. Life underwaterTissue Extractslcsh:R[ SDV.BC.BC ] Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC]Biology and Life SciencesCell BiologyFibroblastsbiology.organism_classificationIn vitroBiological TissuechemistryCell culturelcsh:QGlycoprotein
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Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas

2018

15 pages; International audience; Background: Conchiferan molluscs construct a biocalcified shell that likely supported much of their evolutionary success.However, beyond broad proteomic and transcriptomic surveys of molluscan shells and the shell-forming mantle tissue,little is known of the spatial and ontogenetic regulation of shell fabrication. In addition, most efforts have been focused onspecies that deposit nacre, which is at odds with the majority of conchiferan species that fabricate shells using acrossed-lamellar microstructure, sensu lato. Results: By combining proteomic and transcriptomic sequencing with in situhybridization we have identified a suite of gene products associated …

Proteomics0301 basic medicineGlycosylationProteomematrix proteinHealth InformaticsLymnaea stagnalisProteomicsalternative splicing03 medical and health sciencesmolluscAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]evolutionAnimalsMantle (mollusc)GeneGenetic Association Studiesmodularitymollusc; biomineralizationRegulation of gene expressionMineralsbiologyPhylumResearchGene Expression ProfilingGene Expression Regulation Developmentalbiomineralizationbiology.organism_classificationComputer Science ApplicationsGene expression profilingEvolvability030104 developmental biologyMolluscashellEvolutionary biologygene expressiontranscriptomeasymmetryGigaScience
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Proteomics of CaCO3 biomineral-associated proteins: how to properly address their analysis.

2013

8 pages; International audience; In a recent editorial (Proc. Natl. Acad. Sci., 2013 110, E2144-E2146) and elsewhere, questions have been raised regarding the experimental practices in relation to the proteomic analysis of organic matrices associated to the biomineralized CaCO3 skeletons of metazoans such as molluscan shells and coral skeletons. Indeed, although the use of new high sensitivity MS technology potentially allows to identify a greater number of proteins, it is also equally (or even more) sensitive to contamination of residual proteins from soft tissues, which are in close contact with the biomineral. Based on our own past and present experimental know-how-observations that are …

ProteomicsBiomineralizationSample preparationNanotechnologyComputational biologyBiologyProteomicsBiochemistryCalcium Carbonate03 medical and health sciencesCalcification PhysiologicBleaching treatmentAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]AnimalsCalcifying extracellular matrix[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular BiologyClose contact030304 developmental biology0303 health sciences030302 biochemistry & molecular biologyProteinsAnimal proteomics[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsAnthozoaExtracellular Matrix[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]MolluscaProtein identificationProtein identificationBiomineralization
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Baseline assessment of heavy metals content and trophic position of the invasive blue swimming crab Portunus segnis (Forskål, 1775) in the Gulf of Ga…

2018

This study provides a baseline assessment of cadmium, copper, iron, manganese, lead, and zinc concentrations in muscles, gills, and exoskeleton of the Lessepsian blue swimming crab Portunus segnis captured in the Gulf of Gabès (Southern Mediterranean Sea, Tunisia) in November 2015. Furthermore, the species’ trophic position is estimated using CN stable isotope analysis. The exoskeleton showed the lowest metal contents; in soft tissues, the essential Cu, Fe, and Zn and the non-essential Cd, Mn, and Pb showed the highest and lowest concentrations, respectively. The crab was characterized by a trophic position of 3.32, confirming its carnivorous trophic habits. Compared with literature data on…

Settore BIO/07 - EcologiaGills0106 biological sciencesGillMediterranean climateFood ChainTunisiaBrachyurachemistry.chemical_elementZoologyPortunus segni010501 environmental sciencesAquatic ScienceBiologyOceanography01 natural sciencesAnimal ShellMediterranean seaAnimal ShellsBaselineMetals HeavyMediterranean SeaAnimalsTissue Distribution0105 earth and related environmental sciencesInvertebrateIsotope analysisTrophic levelCadmiumAnimalStable isotope ratioMuscles010604 marine biology & hydrobiologyFishesTrophic positionStable isotopePollutionHeavy metalchemistryGillMuscleBiological invasionFisheWater Pollutants ChemicalEnvironmental MonitoringMarine Pollution Bulletin
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Deep conservation of bivalve nacre proteins highlighted by shell matrix proteomics of the Unionoida Elliptio complanata and Villosa lienosa.

2016

The formation of the molluscan shell nacre is regulated to a large extent by a matrix of extracellular macromolecules that are secreted by the shell-forming tissue, the mantle. This so-called ‘calcifying matrix’ is a complex mixture of proteins, glycoproteins and polysaccharides that is assembled and occluded within the mineral phase during the calcification process. Better molecular-level characterization of the substances that regulate nacre formation is still required. Notable advances in expressed tag sequencing of freshwater mussels, such as Elliptio complanata and Villosa lienosa , provide a pre-requisite to further characterize bivalve nacre proteins by a proteomic approach. In this…

Unionidae0301 basic medicineUnionoida[ SDV.BA.ZI ] Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyVillosa lienosaBiomedical EngineeringBiophysicsLife Sciences–Earth Science interfaceBioengineeringBiologyProteomicsBiochemistrybivalveEvolution MolecularBiomaterials03 medical and health sciencesPaleontologyCalcification PhysiologicproteomicsAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]shell nacreShell matrixAnimalscalcium carbonate14. Life underwaterNacreMantle (mollusc)chemistry.chemical_classificationExtracellular Matrix ProteinsElliptiobiology.organism_classificationbiomineralization[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology030104 developmental biologyBiochemistrychemistry[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]organic matrix proteinsGlycoproteinBiotechnologyBiomineralization
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2016

AbstractDetermining the manganese concentration in shells of freshwater bivalves provides a unique way to obtain information about climate and environmental changes during time-intervals that pre-date instrumental data records. This approach, however, relies on a thorough understanding of how manganese is incorporated into the shell material –a point that remained controversial so far. Here we clarify this issue, using state-of-the-art X-ray absorption and X-ray emission spectroscopy in combination with band structure calculations. We verify that in the shells of all studied species manganese is incorporated as high-spin Mn2+, i.e. manganese always has the same valence as calcium. More impo…

X-ray absorption spectroscopyMultidisciplinaryValence (chemistry)010504 meteorology & atmospheric sciencesAragoniteMineralogychemistry.chemical_elementManganeseBiologyengineering.material010502 geochemistry & geophysics01 natural sciencesAnimal Shellschemistry.chemical_compoundCalcium carbonatechemistryMollusc shellengineeringCarbonate14. Life underwater0105 earth and related environmental sciencesScientific Reports
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The shell matrix and microstructure of the Ram's Horn squid: Molecular and structural characterization.

2020

20 pages; International audience; Molluscs are one of the most diversified phyla among metazoans. Most of them produce an external calcified shell, resulting from the secretory activity of a specialized epithelium of the calcifying mantle. This biomineralization process is controlled by a set of extracellular macromolecules, the organic matrix. In spite of several studies, these components are mainly known for bivalves and gastropods. In the present study, we investigated the physical and biochemical properties of the internal planispiral shell of the Ram's Horn squid Spirula spirula. Scanning Electron Microscope investigations of the shell reveal a complex microstructural organization. The…

[SDE] Environmental SciencesBiomineralizationProteomicsRam's horn squidCarbohydratesChitinProteomicsCalcium Carbonate03 medical and health scienceschemistry.chemical_compoundCalcification PhysiologicChitinStructural BiologyAnimal ShellsExtracellularShellAnimals14. Life underwaterMantle (mollusc)[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMicrostructure030304 developmental biologySerine protease0303 health sciencesbiology030302 biochemistry & molecular biologyDecapodiformesProteomicbiology.organism_classificationSpirula spirulaCephalopod[SDV.IB.BIO] Life Sciences [q-bio]/Bioengineering/Biomaterials[SDE.BE] Environmental Sciences/Biodiversity and Ecologychemistry[SDE]Environmental SciencesBiophysicsbiology.protein[SDE.BE]Environmental Sciences/Biodiversity and EcologyBiomineralizationJournal of structural biology
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Mollusc shellomes: Past, present and future.

2020

13 pages; International audience; In molluscs, the shell fabrication requires a large array of secreted macromolecules including proteins and polysaccharides. Some of them are occluded in the shell during mineralization process and constitute the shell repertoire. The protein moieties, also called shell proteomes or, more simply, 'shellomes', are nowadays analyzed via high-throughput approaches. These latter, applied so far on about thirty genera, have evidenced the huge diversity of shellomes from model to model. They also pinpoint the recurrent presence of functional domains of diverse natures. Shell proteins are not only involved in guiding the mineral deposition, but also in enzymatic a…

[SDE] Environmental SciencesProteomeLarge arrayCarbohydratesMacroevolutionEmergent propertyLow complexity03 medical and health sciencesStructural BiologyAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]ShellAnimalsBiomineralComplex systems biology[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsShellomicsComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesMineralsMatrixChemistry030302 biochemistry & molecular biologyMineral depositionEvolvability[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyEvolutionary biologyMolluscaProteome[SDE]Environmental Sciences[SDV.BA.ZI] Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyMolluscJournal of structural biology
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Microstructures in shells of the freshwater gastropod Viviparus viviparus: a potential sensor for temperature change?

2013

Abstract Mollusk shells contain a plethora of information on past climate variability. However, only a limited toolkit is currently available to reconstruct such data from the shells. The environmental data of some proxies (e.g. Sr/Ca ratios) is obscured by physiological effects, whereas other proxies, such as δ 18 O, simultaneously provide information on two or more different environmental variables. The present study investigates whether microstructures of the freshwater gastropod Viviparus viviparus provide an alternative means to reconstruct past water temperature. Cold and highly variable temperature regimes resulted in the precipitation of highly unordered first-order lamellae of simp…

biologyBiological clockEcologyPrecipitation (chemistry)GastropodaBiomedical EngineeringTemperatureMineralogyFresh WaterGeneral MedicineOrgan Sizebiology.organism_classificationMicrostructureBiochemistryGastropod shellExtreme temperatureBiomaterialsHomogeneousViviparus viviparusAnimal ShellsSclerochronologyAnimalsMolecular BiologyBiotechnologyActa biomaterialia
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