Search results for "Ansatz"

showing 10 items of 113 documents

Coarse-grained models of double-stranded DNA based on experimentally determined knotting probabilities

2018

Abstract To accurately model double-stranded DNA in a manner that is computationally efficient, coarse-grained models of DNA are introduced, where model parameters are selected by fitting the spectrum of observable DNA knots: We develop a general method to fit free parameters of coarse-grained chain models by comparing experimentally obtained knotting probabilities of short DNA chains to knotting probabilities that are computed in Monte Carlo simulations, resulting in coarse-grained DNA models which are tailored to reflect DNA topology in the best possible way. The method is exemplified by fitting ideal chain models as well as a bead-spring model with excluded volume interactions, to model …

0301 basic medicinePhysicsPersistence lengthQuantitative Biology::BiomoleculesPolymers and PlasticsGeneral Chemical EngineeringMonte Carlo methodfood and beveragesObservableGeneral ChemistryBiochemistry03 medical and health sciencesMolecular dynamics030104 developmental biologyMaterials ChemistryEnvironmental ChemistryStatistical physicsIdeal chainTopology (chemistry)AnsatzFree parameterReactive and Functional Polymers
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A modified ansatz for explicitly correlated coupled-cluster wave functions that is suitable for response theory

2009

A modified ansatz for explicitly correlated coupled-cluster wave functions with a single correlation factor is set forward. It is based on the fixed amplitude ansatz of Ten-no [Chem. Phys. Lett. 398, 56 (2004)] to which an extra term is added that allows for the explicitly correlated description of singly excited configurations. The new approach has been implemented for coupled-cluster singles and doubles with the aid of automated techniques. Numerical results are presented for vertical excitation energies, and ground and excited state equilibrium distances and harmonic frequencies of diatomics. The new approach is shown to provide a nearly unbiased description of ground and predominantly s…

AmplitudeCoupled clusterChemistryExcited stateQuantum mechanicsGeneral Physics and AstronomyPhysical and Theoretical ChemistryWave functionDiatomic moleculeExcitationTerm (time)AnsatzThe Journal of Chemical Physics
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Compact two-electron wave function for bond dissociation and Van der Waals interactions: A natural amplitude assessment

2014

Electron correlations in molecules can be divided in short range dynamical correlations, long range Van der Waals type interactions and near degeneracy static correlations. In this work we analyze for a one-dimensional model of a two-electron system how these three types of correlations can be incorporated in a simple wave function of restricted functional form consisting of an orbital product multiplied by a single correlation function $f(r_{12})$ depending on the interelectronic distance $r_{12}$. Since the three types of correlations mentioned lead to different signatures in terms of the natural orbital (NO) amplitudes in two-electron systems we make an analysis of the wave function in t…

Atomic Physics (physics.atom-ph)General Physics and AstronomyFOS: Physical sciencesPhysics - Atomic Physicssymbols.namesakeCondensed Matter - Strongly Correlated ElectronsAtomic orbitalQuantum mechanicsPhysics - Chemical PhysicsPhysics::Atomic PhysicsSDG 7 - Affordable and Clean EnergyPhysical and Theoretical ChemistryWave functionAnsatzPhysicsChemical Physics (physics.chem-ph)Quantum Physics/dk/atira/pure/sustainabledevelopmentgoals/affordable_and_clean_energyta114Electronic correlationStrongly Correlated Electrons (cond-mat.str-el)Computational Physics (physics.comp-ph)Diatomic molecule3. Good healthBond lengthAmplitudesymbolsvan der Waals forceQuantum Physics (quant-ph)Physics - Computational Physics
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Driven Bose-Hubbard Model with a Parametrically Modulated Harmonic Trap

2016

We investigate a one-dimensional Bose–Hubbard model in a parametrically driven global harmonic trap. The delicate interplay of both the local interaction of the atoms in the lattice and the driving of the global trap allows us to control the dynamical stability of the trapped quantum many-body state. The impact of the atomic interaction on the dynamical stability of the driven quantum many-body state is revealed in the regime of weak interaction by analyzing a discretized Gross–Pitaevskii equation within a Gaussian variational ansatz, yielding a Mathieu equation for the condensate width. The parametric resonance condition is shown to be modified by the atom interaction strength. In particul…

Bose–Hubbard modelquantum many-body systemsFOS: Physical sciencesHarmonic (mathematics)02 engineering and technologyBose–Hubbard modelWeak interaction01 natural sciencessymbols.namesakeQuantum mechanics0103 physical sciencesAtomquantum gas010306 general physicsQuantumAnsatzPhysicsCondensed Matter::Quantum Gasesta114021001 nanoscience & nanotechnologyMathieu functionQuantum Gases (cond-mat.quant-gas)symbolsParametric oscillator0210 nano-technologyCondensed Matter - Quantum Gasesharmonic trap
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Multireference equation-of-motion coupled cluster theory.

2012

A generalization of the equation-of-motion coupled cluster theory is proposed, which is built upon a multireference parent state. This method is suitable for a number of electronic states of a system that can be described by similar active spaces, i.e., different linear combinations of the same set of active space determinants. One of the suitable states is chosen as the parent state and the dominant dynamical correlation is optimized for this state using an internally contracted multireference coupled cluster ansatz. The remaining correlation and orbital relaxation effects are obtained via an uncontracted diagonalization of the transformed Hamiltonian, Ĥ = e(-T) Ĥe(T), in a compact multire…

ChemistryGeneral Physics and AstronomyMultireference configuration interactionEquations of motionFull configuration interactionsymbols.namesakeCoupled clusterClassical mechanicsExcited statesymbolsPhysical and Theoretical ChemistryAtomic physicsHamiltonian (quantum mechanics)Linear combinationAnsatzThe Journal of chemical physics
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Derivation of coarse-grained simulation models of chlorophyll molecules in lipid bilayers for applications in light harvesting systems

2015

The correct interplay of interactions between protein, pigment and lipid molecules is highly relevant for our understanding of the association behavior of the light harvesting complex (LHCII) of green plants. To cover the relevant time and length scales in this multicomponent system, a multi-scale simulation ansatz is employed that subsequently uses a classical all atomistic (AA) model to derive a suitable coarse grained (CG) model which can be backmapped into the AA resolution, aiming for a seamless conversion between two scales. Such an approach requires a faithful description of not only the protein and lipid components, but also the interaction functions for the indispensable pigment mo…

ChlorophyllModels MolecularChlorophyll bChlorophyll aChlorophyll ABilayerLipid BilayersLight-Harvesting Protein ComplexesGeneral Physics and AstronomyLight-harvesting complexchemistry.chemical_compoundCrystallographychemistryChemical physicsChlorophyllddc:540MoleculeProtein MultimerizationPhysical and Theoretical ChemistryProtein Structure QuaternaryLipid bilayerAnsatz
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An orbital-invariant internally contracted multireference coupled cluster approach.

2011

We have formulated and implemented an internally contracted multireference coupled cluster (ic-MRCC) approach aimed at solving two of the problems encountered in methods based on the Jeziorski-Monkhorst ansatz: (i) the scaling of the computational and memory costs with respect to the number of references, and (ii) the lack of invariance of the energy with respect to rotations among active orbitals. The ic-MRCC approach is based on a straightforward generalization of the single-reference coupled cluster ansatz in which an exponential operator is applied to a multiconfigurational wave function. The ic-MRCC method truncated to single and double excitations (ic-MRCCSD) yields very accurate pote…

Coupled clusterAtomic orbitalChemistryComputationGeneral Physics and AstronomyPhysical and Theoretical ChemistryAtomic physicsInvariant (physics)Wave functionPotential energyScalingAnsatzMathematical physicsThe Journal of chemical physics
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Perturbative calculation of spin-orbit splittings using the equation-of-motion ionization-potential coupled-cluster ansatz.

2008

Spin-orbit splittings for (2)Pi states are calculated within coupled-cluster (CC) theory via first-order degenerate perturbation theory. Using the equation-of-motion CC variant for ionization potentials (EOMIP-CC), the two components of the considered (2)Pi state are treated in a balanced way by generating both radical states via annihilation of one electron out of the CC wave function of the corresponding anion. We report on the implementation of the described approach within the CC singles and doubles approximation. To ensure computational efficiency, an atomic mean-field approximation for the spin-orbit integrals is used, resulting in a formulation in terms of one-electron transition-den…

Coupled clusterChemistryIonizationGeneral Physics and AstronomyPerturbation theory (quantum mechanics)Physical and Theoretical ChemistryTriplet stateAtomic physicsWave functionSpin contaminationAnsatzSpin-½The Journal of chemical physics
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Response properties with explicitly correlated coupled-cluster methods using a Slater-type correlation factor and cusp conditions

2009

The recently proposed extension of the explicitly correlated coupled-cluster ansatz using cusp conditions [A. Kohn, J. Chem. Phys. 130, 104104 (2009)] is tested for suitability in the calculation of response properties. For this purpose, static and dynamic electrical properties up to ESHG hyperpolarizabilities as well as optical rotations have been computed within the CCSD(F12) model. It is shown that effectively converged correlation contributions can reliably be obtained using augmented quadruple zeta basis sets already. The ansatz is optionally equipped with an extension capable of reducing the one-electron basis set error. A further simplification of the method specific Lagrangian aimed…

Cusp (singularity)Coupled clusterBasis (linear algebra)ChemistryQuantum mechanicsGeneral Physics and AstronomyStatistical physicsExtension (predicate logic)Physical and Theoretical ChemistryOptical rotationType (model theory)Basis setAnsatzThe Journal of Chemical Physics
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Explicitly correlated internally contracted multireference coupled-cluster singles and doubles theory: ic-MRCCSD(F12∗)

2013

Abstract An explicitly correlated ansatz employing Slater-type geminals and cusp conditions is developed for the internally contracted multireference coupled-cluster singles and doubles method. Only the most important geminal terms are retained in the spirit of earlier work for single-reference theory. Throughout all our test calculations, the new ic-MRCCSD(F12∗) method improves the basis set convergence of many properties, e.g., spectroscopic constants or singlet–triplet splittings, with only little extra computational cost. If a perturbative correction for connected triples is included (the ic-MRCCSD(F12∗)+(T) method), very accurate results can be obtained even with minimal active spaces.

Cusp (singularity)PhysicsCoupled clusterGeminalComputational chemistryQuantum mechanicsConvergence (routing)General Physics and AstronomyPhysics::Chemical PhysicsPhysical and Theoretical ChemistryBasis setAnsatzChemical Physics Letters
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